Gchil1888.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1888.t1
Unique Name	Gchil1888.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	753

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:970302..972560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391589.RGAI101_1487
PFAMs	Fe-ADH
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01734,RC02273
KEGG ko	ko:K00001
KEGG Reaction	R00623,R00754,R02124,R04805,R04880,R05233,R05234,R06917,R06927,R07105,R08281,R08306,R08310
KEGG Pathway	ko00010,ko00071,ko00350,ko00625,ko00626,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01220,map00010,map00071,map00350,map00625,map00626,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01220
Evalue	2.96e-05
EggNOG OGs	COG1454@1\|root,COG1454@2\|Bacteria,1MVPH@1224\|Proteobacteria,2TUHD@28211\|Alphaproteobacteria,2P2Q7@2433\|Roseobacter
EC	1.1.1.1
Description	Iron-containing alcohol dehydrogenase
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1888	Gchil1888	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 970302..972560 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1888.t1.start1	Gchil1888.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 970302..970304 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1888.t1.CDS1	Gchil1888.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 970302..972560 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1888.t1.exon1	Gchil1888.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 970302..972560 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1888.t1.stop1	Gchil1888.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 972558..972560 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1888.t1	Gchil1888.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 970302..972560 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:970302..972560+
coding sequence from alignment at tig00004439_pilon:970302..972560+

mRNA sequence

>Gchil1888.t1 ID=Gchil1888.t1|Name=Gchil1888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp
MSSREKAIANKSQYHDQHYVGGILPQGAYTVLMRVTMKTELNATEQKIIL
AEYAKKSCAEQGVIRCDILFQVNKLGIARDDFYEIWISFADARAYSEHER
TSHAAKLRLCLEDPRGGDSSKLLTKLAHNVSLLRLVRPNISDWVSAFDYE
PENTTPLTERFGGSLKVKDDPDKIRRSLEMLISSVGLEDVIVLVATASAF
SIESMRSLRTECDEYLADLEQSPGIVRTGALVDKNDPYRIIMMTVHDSAD
TAGACFDMELAADFITDDGWSVKRCHAVFPDKVGWEKKLSEADQKRFLGD
VVEENFEKLVEGPGALMKYDRGEAEDSKMRLLQGAGSFDMLKECVRSMTQ
VSSGVVKALLLGGWNQSRLHPVLVQIEYDRYNDPFEIQFGFGPAVSSTEI
KTQDLRKALTDMADFGPDVIIGYGGGTVMDMAKLLGRLGNESSKDIESCL
NTIDAAAEADAAAIGLPISSAPVPVVLISATVGSGAEMTEWCIVAGKQKD
GSIRRLPLYFYDKPGAMRLVTEKTAIQDSRLISPRRLLGLHAGQGALELV
SLAIDTLISLHERLEDQASKFAIRGLRQAYRVVMDARREPQSASGHSRDP
LVEAKTLIGLATDGLGRPGVCVRLCLAVLDSLVDGRLPTVFREVLTRVTI
AAIEESIENRPEEGRRAFQEALKATRHNYRRELLTDMLRKAEDCDVSLLR
MVGMVRRKIPEVAIRVHSYLKDETLSPLERYLSQTEVLERILWRAIGQEY
EL*

spliced messenger RNA

>Gchil1888.t1 ID=Gchil1888.t1|Name=Gchil1888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00004439_pilon:970302..972560+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCTCGTGAAAAGGCCATAGCCAACAAATCTCAGTACCATGACCA
GCACTATGTTGGCGGTATCTTGCCACAAGGAGCATACACTGTTCTCATGC
GAGTGACCATGAAAACGGAATTGAACGCCACAGAGCAGAAGATAATTCTG
GCAGAGTATGCAAAAAAAAGTTGTGCTGAGCAAGGGGTGATCCGTTGCGA
CATTTTGTTCCAAGTCAACAAGTTGGGTATTGCAAGGGATGACTTTTACG
AAATATGGATCTCATTTGCAGACGCTCGGGCGTATTCAGAACACGAGCGA
ACTTCGCATGCTGCCAAGTTGCGCCTATGTCTTGAAGACCCGCGCGGAGG
AGATAGCTCGAAGCTTCTCACAAAACTTGCCCACAATGTGTCTCTCCTGA
GACTTGTGAGACCAAATATTTCGGATTGGGTTTCTGCATTTGACTATGAA
CCAGAGAATACCACACCTTTGACAGAAAGATTTGGGGGGAGCCTGAAAGT
AAAGGATGACCCTGACAAAATTCGGAGGTCTCTGGAAATGCTAATATCCA
GTGTGGGACTTGAGGATGTCATCGTGTTGGTAGCGACAGCATCTGCTTTC
TCAATAGAAAGCATGAGATCGCTTCGTACTGAATGTGACGAGTACCTCGC
AGATCTCGAGCAAAGTCCTGGAATTGTTCGAACAGGTGCATTGGTTGATA
AGAACGACCCGTATAGAATTATAATGATGACTGTACATGATAGTGCAGAT
ACTGCGGGGGCATGTTTCGATATGGAGCTCGCTGCTGACTTTATCACAGA
TGATGGATGGTCAGTAAAGAGATGTCATGCTGTGTTTCCTGATAAGGTTG
GGTGGGAGAAGAAACTTAGCGAAGCGGATCAAAAGAGATTTTTGGGTGAT
GTGGTTGAGGAAAATTTTGAGAAACTCGTAGAGGGACCAGGAGCGCTAAT
GAAATATGATCGAGGGGAGGCCGAAGATTCAAAAATGAGACTTTTACAAG
GTGCAGGCTCTTTCGATATGCTTAAAGAGTGTGTGAGGTCTATGACTCAA
GTTTCGTCTGGTGTTGTAAAGGCTTTGCTTCTTGGCGGATGGAATCAGTC
ACGGTTGCATCCTGTTCTTGTACAAATTGAATACGACAGATATAACGACC
CGTTTGAGATACAGTTCGGTTTTGGACCAGCGGTGAGCAGCACAGAAATC
AAAACTCAGGACTTGAGAAAAGCATTGACGGATATGGCGGACTTTGGCCC
AGATGTAATCATAGGCTATGGAGGTGGGACTGTGATGGACATGGCGAAGC
TCTTAGGGAGGCTGGGAAATGAATCGAGCAAGGACATCGAATCATGTTTG
AACACCATCGACGCAGCGGCTGAGGCTGACGCAGCGGCCATTGGACTACC
AATAAGTTCAGCACCTGTTCCAGTCGTACTGATATCAGCAACTGTTGGAA
GCGGTGCCGAGATGACCGAATGGTGTATCGTCGCAGGTAAACAAAAGGAC
GGCTCGATACGCCGCTTACCGCTCTATTTCTACGATAAGCCTGGAGCAAT
GCGTCTTGTAACAGAGAAGACCGCGATACAAGATTCGAGGTTAATCAGTC
CAAGGCGTCTTCTCGGACTTCATGCTGGCCAAGGTGCGCTAGAACTTGTC
TCTTTGGCAATCGATACTCTCATATCACTACATGAGCGTCTTGAGGACCA
GGCGTCGAAATTTGCAATCAGAGGACTGAGACAAGCATATAGAGTGGTCA
TGGATGCTCGAAGAGAGCCTCAAAGCGCTTCAGGGCATTCTCGAGATCCG
TTGGTTGAAGCGAAGACACTGATTGGGTTAGCAACAGACGGACTAGGTCG
TCCTGGGGTTTGCGTGCGATTATGTCTTGCCGTTCTAGATTCGCTCGTTG
ACGGCAGATTGCCAACAGTCTTTCGAGAGGTTCTTACTCGTGTAACAATC
GCGGCCATTGAAGAAAGCATTGAGAATAGGCCAGAAGAGGGAAGACGAGC
ATTTCAAGAGGCACTTAAAGCAACGAGGCATAATTACAGGAGAGAACTCT
TGACGGATATGTTGAGGAAAGCTGAAGATTGCGACGTATCATTGCTACGA
ATGGTTGGCATGGTACGGCGAAAGATACCAGAAGTGGCAATTCGCGTGCA
CAGCTATCTGAAAGACGAAACGCTGAGCCCCTTGGAACGGTACCTAAGCC
AAACGGAAGTGCTAGAGCGTATTCTTTGGCGCGCAATTGGACAAGAATAT
GAGCTGTAG

protein sequence of Gchil1888.t1

>Gchil1888.t1 ID=Gchil1888.t1|Name=Gchil1888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=753bp
MSSREKAIANKSQYHDQHYVGGILPQGAYTVLMRVTMKTELNATEQKIIL
AEYAKKSCAEQGVIRCDILFQVNKLGIARDDFYEIWISFADARAYSEHER
TSHAAKLRLCLEDPRGGDSSKLLTKLAHNVSLLRLVRPNISDWVSAFDYE
PENTTPLTERFGGSLKVKDDPDKIRRSLEMLISSVGLEDVIVLVATASAF
SIESMRSLRTECDEYLADLEQSPGIVRTGALVDKNDPYRIIMMTVHDSAD
TAGACFDMELAADFITDDGWSVKRCHAVFPDKVGWEKKLSEADQKRFLGD
VVEENFEKLVEGPGALMKYDRGEAEDSKMRLLQGAGSFDMLKECVRSMTQ
VSSGVVKALLLGGWNQSRLHPVLVQIEYDRYNDPFEIQFGFGPAVSSTEI
KTQDLRKALTDMADFGPDVIIGYGGGTVMDMAKLLGRLGNESSKDIESCL
NTIDAAAEADAAAIGLPISSAPVPVVLISATVGSGAEMTEWCIVAGKQKD
GSIRRLPLYFYDKPGAMRLVTEKTAIQDSRLISPRRLLGLHAGQGALELV
SLAIDTLISLHERLEDQASKFAIRGLRQAYRVVMDARREPQSASGHSRDP
LVEAKTLIGLATDGLGRPGVCVRLCLAVLDSLVDGRLPTVFREVLTRVTI
AAIEESIENRPEEGRRAFQEALKATRHNYRRELLTDMLRKAEDCDVSLLR
MVGMVRRKIPEVAIRVHSYLKDETLSPLERYLSQTEVLERILWRAIGQEY
EL*

mRNA from alignment at tig00004439_pilon:970302..972560+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1888.t1 ID=Gchil1888.t1|Name=Gchil1888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2259bp|location=Sequence derived from alignment at tig00004439_pilon:970302..972560+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCTCGTGAAAAGGCCATAGCCAACAAATCTCAGTACCATGACCA
GCACTATGTTGGCGGTATCTTGCCACAAGGAGCATACACTGTTCTCATGC
GAGTGACCATGAAAACGGAATTGAACGCCACAGAGCAGAAGATAATTCTG
GCAGAGTATGCAAAAAAAAGTTGTGCTGAGCAAGGGGTGATCCGTTGCGA
CATTTTGTTCCAAGTCAACAAGTTGGGTATTGCAAGGGATGACTTTTACG
AAATATGGATCTCATTTGCAGACGCTCGGGCGTATTCAGAACACGAGCGA
ACTTCGCATGCTGCCAAGTTGCGCCTATGTCTTGAAGACCCGCGCGGAGG
AGATAGCTCGAAGCTTCTCACAAAACTTGCCCACAATGTGTCTCTCCTGA
GACTTGTGAGACCAAATATTTCGGATTGGGTTTCTGCATTTGACTATGAA
CCAGAGAATACCACACCTTTGACAGAAAGATTTGGGGGGAGCCTGAAAGT
AAAGGATGACCCTGACAAAATTCGGAGGTCTCTGGAAATGCTAATATCCA
GTGTGGGACTTGAGGATGTCATCGTGTTGGTAGCGACAGCATCTGCTTTC
TCAATAGAAAGCATGAGATCGCTTCGTACTGAATGTGACGAGTACCTCGC
AGATCTCGAGCAAAGTCCTGGAATTGTTCGAACAGGTGCATTGGTTGATA
AGAACGACCCGTATAGAATTATAATGATGACTGTACATGATAGTGCAGAT
ACTGCGGGGGCATGTTTCGATATGGAGCTCGCTGCTGACTTTATCACAGA
TGATGGATGGTCAGTAAAGAGATGTCATGCTGTGTTTCCTGATAAGGTTG
GGTGGGAGAAGAAACTTAGCGAAGCGGATCAAAAGAGATTTTTGGGTGAT
GTGGTTGAGGAAAATTTTGAGAAACTCGTAGAGGGACCAGGAGCGCTAAT
GAAATATGATCGAGGGGAGGCCGAAGATTCAAAAATGAGACTTTTACAAG
GTGCAGGCTCTTTCGATATGCTTAAAGAGTGTGTGAGGTCTATGACTCAA
GTTTCGTCTGGTGTTGTAAAGGCTTTGCTTCTTGGCGGATGGAATCAGTC
ACGGTTGCATCCTGTTCTTGTACAAATTGAATACGACAGATATAACGACC
CGTTTGAGATACAGTTCGGTTTTGGACCAGCGGTGAGCAGCACAGAAATC
AAAACTCAGGACTTGAGAAAAGCATTGACGGATATGGCGGACTTTGGCCC
AGATGTAATCATAGGCTATGGAGGTGGGACTGTGATGGACATGGCGAAGC
TCTTAGGGAGGCTGGGAAATGAATCGAGCAAGGACATCGAATCATGTTTG
AACACCATCGACGCAGCGGCTGAGGCTGACGCAGCGGCCATTGGACTACC
AATAAGTTCAGCACCTGTTCCAGTCGTACTGATATCAGCAACTGTTGGAA
GCGGTGCCGAGATGACCGAATGGTGTATCGTCGCAGGTAAACAAAAGGAC
GGCTCGATACGCCGCTTACCGCTCTATTTCTACGATAAGCCTGGAGCAAT
GCGTCTTGTAACAGAGAAGACCGCGATACAAGATTCGAGGTTAATCAGTC
CAAGGCGTCTTCTCGGACTTCATGCTGGCCAAGGTGCGCTAGAACTTGTC
TCTTTGGCAATCGATACTCTCATATCACTACATGAGCGTCTTGAGGACCA
GGCGTCGAAATTTGCAATCAGAGGACTGAGACAAGCATATAGAGTGGTCA
TGGATGCTCGAAGAGAGCCTCAAAGCGCTTCAGGGCATTCTCGAGATCCG
TTGGTTGAAGCGAAGACACTGATTGGGTTAGCAACAGACGGACTAGGTCG
TCCTGGGGTTTGCGTGCGATTATGTCTTGCCGTTCTAGATTCGCTCGTTG
ACGGCAGATTGCCAACAGTCTTTCGAGAGGTTCTTACTCGTGTAACAATC
GCGGCCATTGAAGAAAGCATTGAGAATAGGCCAGAAGAGGGAAGACGAGC
ATTTCAAGAGGCACTTAAAGCAACGAGGCATAATTACAGGAGAGAACTCT
TGACGGATATGTTGAGGAAAGCTGAAGATTGCGACGTATCATTGCTACGA
ATGGTTGGCATGGTACGGCGAAAGATACCAGAAGTGGCAATTCGCGTGCA
CAGCTATCTGAAAGACGAAACGCTGAGCCCCTTGGAACGGTACCTAAGCC
AAACGGAAGTGCTAGAGCGTATTCTTTGGCGCGCAATTGGACAAGAATAT
GAGCTGTAG

Coding sequence (CDS) from alignment at tig00004439_pilon:970302..972560+

>Gchil1888.t1 ID=Gchil1888.t1|Name=Gchil1888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2259bp|location=Sequence derived from alignment at tig00004439_pilon:970302..972560+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCTCGTGAAAAGGCCATAGCCAACAAATCTCAGTACCATGACCA
GCACTATGTTGGCGGTATCTTGCCACAAGGAGCATACACTGTTCTCATGC
GAGTGACCATGAAAACGGAATTGAACGCCACAGAGCAGAAGATAATTCTG
GCAGAGTATGCAAAAAAAAGTTGTGCTGAGCAAGGGGTGATCCGTTGCGA
CATTTTGTTCCAAGTCAACAAGTTGGGTATTGCAAGGGATGACTTTTACG
AAATATGGATCTCATTTGCAGACGCTCGGGCGTATTCAGAACACGAGCGA
ACTTCGCATGCTGCCAAGTTGCGCCTATGTCTTGAAGACCCGCGCGGAGG
AGATAGCTCGAAGCTTCTCACAAAACTTGCCCACAATGTGTCTCTCCTGA
GACTTGTGAGACCAAATATTTCGGATTGGGTTTCTGCATTTGACTATGAA
CCAGAGAATACCACACCTTTGACAGAAAGATTTGGGGGGAGCCTGAAAGT
AAAGGATGACCCTGACAAAATTCGGAGGTCTCTGGAAATGCTAATATCCA
GTGTGGGACTTGAGGATGTCATCGTGTTGGTAGCGACAGCATCTGCTTTC
TCAATAGAAAGCATGAGATCGCTTCGTACTGAATGTGACGAGTACCTCGC
AGATCTCGAGCAAAGTCCTGGAATTGTTCGAACAGGTGCATTGGTTGATA
AGAACGACCCGTATAGAATTATAATGATGACTGTACATGATAGTGCAGAT
ACTGCGGGGGCATGTTTCGATATGGAGCTCGCTGCTGACTTTATCACAGA
TGATGGATGGTCAGTAAAGAGATGTCATGCTGTGTTTCCTGATAAGGTTG
GGTGGGAGAAGAAACTTAGCGAAGCGGATCAAAAGAGATTTTTGGGTGAT
GTGGTTGAGGAAAATTTTGAGAAACTCGTAGAGGGACCAGGAGCGCTAAT
GAAATATGATCGAGGGGAGGCCGAAGATTCAAAAATGAGACTTTTACAAG
GTGCAGGCTCTTTCGATATGCTTAAAGAGTGTGTGAGGTCTATGACTCAA
GTTTCGTCTGGTGTTGTAAAGGCTTTGCTTCTTGGCGGATGGAATCAGTC
ACGGTTGCATCCTGTTCTTGTACAAATTGAATACGACAGATATAACGACC
CGTTTGAGATACAGTTCGGTTTTGGACCAGCGGTGAGCAGCACAGAAATC
AAAACTCAGGACTTGAGAAAAGCATTGACGGATATGGCGGACTTTGGCCC
AGATGTAATCATAGGCTATGGAGGTGGGACTGTGATGGACATGGCGAAGC
TCTTAGGGAGGCTGGGAAATGAATCGAGCAAGGACATCGAATCATGTTTG
AACACCATCGACGCAGCGGCTGAGGCTGACGCAGCGGCCATTGGACTACC
AATAAGTTCAGCACCTGTTCCAGTCGTACTGATATCAGCAACTGTTGGAA
GCGGTGCCGAGATGACCGAATGGTGTATCGTCGCAGGTAAACAAAAGGAC
GGCTCGATACGCCGCTTACCGCTCTATTTCTACGATAAGCCTGGAGCAAT
GCGTCTTGTAACAGAGAAGACCGCGATACAAGATTCGAGGTTAATCAGTC
CAAGGCGTCTTCTCGGACTTCATGCTGGCCAAGGTGCGCTAGAACTTGTC
TCTTTGGCAATCGATACTCTCATATCACTACATGAGCGTCTTGAGGACCA
GGCGTCGAAATTTGCAATCAGAGGACTGAGACAAGCATATAGAGTGGTCA
TGGATGCTCGAAGAGAGCCTCAAAGCGCTTCAGGGCATTCTCGAGATCCG
TTGGTTGAAGCGAAGACACTGATTGGGTTAGCAACAGACGGACTAGGTCG
TCCTGGGGTTTGCGTGCGATTATGTCTTGCCGTTCTAGATTCGCTCGTTG
ACGGCAGATTGCCAACAGTCTTTCGAGAGGTTCTTACTCGTGTAACAATC
GCGGCCATTGAAGAAAGCATTGAGAATAGGCCAGAAGAGGGAAGACGAGC
ATTTCAAGAGGCACTTAAAGCAACGAGGCATAATTACAGGAGAGAACTCT
TGACGGATATGTTGAGGAAAGCTGAAGATTGCGACGTATCATTGCTACGA
ATGGTTGGCATGGTACGGCGAAAGATACCAGAAGTGGCAATTCGCGTGCA
CAGCTATCTGAAAGACGAAACGCTGAGCCCCTTGGAACGGTACCTAAGCC
AAACGGAAGTGCTAGAGCGTATTCTTTGGCGCGCAATTGGACAAGAATAT
GAGCTGTAG