Gchil1886.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1886.t1
Unique NameGchil1886.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:968082..968593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML104314a-PA
Preferred nameLSM10
PFAMsLSM
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005683,GO:0007346,GO:0008150,GO:0010564,GO:0015030,GO:0016604,GO:0017069,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071208,GO:0071209,GO:0090068,GO:0097159,GO:0120114,GO:1900087,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:2000045
Evalue1.55e-12
EggNOG OGsCOG1958@1|root,KOG3428@2759|Eukaryota,3A8FY@33154|Opisthokonta,3BTXX@33208|Metazoa
DescriptionLSM domain
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1886Gchil1886Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 968082..968593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1886.t1Gchil1886.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 968082..968593 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1886.t1.start1Gchil1886.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 968082..968084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1886.t1.CDS1Gchil1886.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 968082..968212 +
Gchil1886.t1.CDS2Gchil1886.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 968304..968460 +
Gchil1886.t1.CDS3Gchil1886.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 968534..968593 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1886.t1.exon1Gchil1886.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 968082..968212 +
Gchil1886.t1.exon2Gchil1886.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 968304..968460 +
Gchil1886.t1.exon3Gchil1886.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 968534..968593 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1886.t1.intron1Gchil1886.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 968213..968303 +
Gchil1886.t1.intron2Gchil1886.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 968461..968533 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1886.t1.stop1Gchil1886.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 968591..968593 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1886.t1 ID=Gchil1886.t1|Name=Gchil1886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=116bp
MGMKNEPTTLTFLLQALCGRRLRLELRNDVHVEGMLDSVDANMNVTISNA
SYATPYEHTDEAPTLLYFDLVYIAARHITFVHIPEDVNVSETMELYARRL
DAVKYASSGGKRRRT*
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spliced messenger RNA

>Gchil1886.t1 ID=Gchil1886.t1|Name=Gchil1886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004439_pilon:968082..968593+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATGAAGAATGAACCAACCACCCTCACCTTTCTTCTCCAAGCTTT
GTGTGGTCGCAGGCTCCGCTTGGAGCTTCGAAACGATGTGCACGTCGAGG
GGATGCTTGACTCCGTCGATGCAAATATGAATGTCACAATATCGAATGCA
TCGTATGCAACACCATATGAACACACCGATGAAGCTCCTACGCTCCTGTA
TTTCGATCTCGTCTATATTGCTGCAAGACACATTACCTTTGTTCACATCC
CAGAAGATGTAAATGTTTCGGAAACAATGGAACTATATGCCAGAAGACTG
GACGCTGTCAAATATGCCAGTTCTGGGGGGAAGCGGAGAAGAACGTAG
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protein sequence of Gchil1886.t1

>Gchil1886.t1 ID=Gchil1886.t1|Name=Gchil1886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MGMKNEPTTLTFLLQALCGRRLRLELRNDVHVEGMLDSVDANMNVTISNA
SYATPYEHTDEAPTLLYFDLVYIAARHITFVHIPEDVNVSETMELYARRL
DAVKYASSGGKRRRT*
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mRNA from alignment at tig00004439_pilon:968082..968593+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1886.t1 ID=Gchil1886.t1|Name=Gchil1886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=512bp|location=Sequence derived from alignment at tig00004439_pilon:968082..968593+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCATGAAGAATGAACCAACCACCCTCACCTTTCTTCTCCAAGCTTT
GTGTGGTCGCAGGCTCCGCTTGGAGCTTCGAAACGATGTGCACGTCGAGG
GGATGCTTGACTCCGTCGATGCAAATATGAAGTAAAGTTCCCCGTCCGCA
GCTGTTTCGATGGATTACAGGTTTAAACCATAGAATCTAACTCATACCGC
ACTCCTTATGGCGTTACTGTAGTGTCACAATATCGAATGCATCGTATGCA
ACACCATATGAACACACCGATGAAGCTCCTACGCTCCTGTATTTCGATCT
CGTCTATATTGCTGCAAGACACATTACCTTTGTTCACATCCCAGAAGATG
TAAATGTTTCGGAAACAATGGAACTATATGTAAGTCTGTGGAAAGTTTCT
GTGCGGTATCAAGGTTGACTTGGAGTTCGACTAACAAAAAAATACACTCT
AGGCCAGAAGACTGGACGCTGTCAAATATGCCAGTTCTGGGGGGAAGCGG
AGAAGAACGTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:968082..968593+

>Gchil1886.t1 ID=Gchil1886.t1|Name=Gchil1886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00004439_pilon:968082..968593+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCATGAAGAATGAACCAACCACCCTCACCTTTCTTCTCCAAGCTTT
GTGTGGTCGCAGGCTCCGCTTGGAGCTTCGAAACGATGTGCACGTCGAGG
GGATGCTTGACTCCGTCGATGCAAATATGAATGTCACAATATCGAATGCA
TCGTATGCAACACCATATGAACACACCGATGAAGCTCCTACGCTCCTGTA
TTTCGATCTCGTCTATATTGCTGCAAGACACATTACCTTTGTTCACATCC
CAGAAGATGTAAATGTTTCGGAAACAATGGAACTATATGCCAGAAGACTG
GACGCTGTCAAATATGCCAGTTCTGGGGGGAAGCGGAGAAGAACGTAG
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