Gchil1881.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1881.t1
Unique Name	Gchil1881.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	696

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:951829..953916 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707525.1
Preferred name	CLCN2
PFAMs	CBS,Voltage_CLC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05010,ko:K05011,ko:K05017,ko:K05018
KEGG TC	2.A.49.2.1,2.A.49.2.11,2.A.49.2.12,2.A.49.2.13,2.A.49.2.4,2.A.49.2.5,2.A.49.2.6,2.A.49.2.7
KEGG Pathway	ko04966,ko04978,map04966,map04978
GOs	GO:0001101,GO:0001508,GO:0001654,GO:0001655,GO:0001822,GO:0003008,GO:0003012,GO:0003014,GO:0003091,GO:0003097,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005247,GO:0005253,GO:0005254,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005856,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006833,GO:0006936,GO:0006950,GO:0007154,GO:0007275,GO:0007423,GO:0007431,GO:0007588,GO:0007589,GO:0008150,GO:0008308,GO:0008509,GO:0009268,GO:0009414,GO:0009415,GO:0009628,GO:0009925,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015075,GO:0015103,GO:0015108,GO:0015267,GO:0015318,GO:0015629,GO:0015698,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0019226,GO:0019227,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0023052,GO:0030104,GO:0030154,GO:0030321,GO:0030323,GO:0030324,GO:0030425,GO:0031224,GO:0031226,GO:0032501,GO:0032502,GO:0034220,GO:0035272,GO:0035295,GO:0035377,GO:0035637,GO:0036477,GO:0042044,GO:0042045,GO:0042221,GO:0042383,GO:0042391,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043010,GO:0043025,GO:0043204,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044297,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044463,GO:0044464,GO:0045177,GO:0045178,GO:0046903,GO:0046983,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050877,GO:0050878,GO:0050891,GO:0050896,GO:0051179,GO:0051234,GO:0051592,GO:0055085,GO:0060041,GO:0060541,GO:0060689,GO:0065007,GO:0065008,GO:0070633,GO:0071944,GO:0072001,GO:0072053,GO:0097447,GO:0097458,GO:0098590,GO:0098656,GO:0098660,GO:0098661,GO:0098870,GO:0120025,GO:0120038,GO:1901700,GO:1902476
Evalue	2.97e-203
EggNOG OGs	COG0038@1\|root,KOG0476@2759\|Eukaryota
Description	voltage-gated chloride channel activity
COG category	P
BRITE	ko00000,ko00001,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1881	Gchil1881	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 951829..953916 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1881.t1.start1	Gchil1881.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 951829..951831 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1881.t1.CDS1	Gchil1881.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 951829..953916 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1881.t1.exon1	Gchil1881.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 951829..953916 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1881.t1.stop1	Gchil1881.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 953914..953916 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1881.t1	Gchil1881.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 951829..953916 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:951829..953916+
coding sequence from alignment at tig00004439_pilon:951829..953916+

mRNA sequence

>Gchil1881.t1 ID=Gchil1881.t1|Name=Gchil1881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp
MFPKPPPPRTPDHVDEVHFAFLDGHPHSAPAALSRPRRPVQPSQQIQHLA
GTSAPTTIIHLARLLAFLVLLGIIPSTIIFLVDISVHNALDLREGIIQLN
LHPALTVFLFCLTGVFLCLASTFICHLCSTEAEGSGIPAMKSLMSGFYDK
VKPALSLWALLAKTIGLVCAIGGGLPVGWEGPNVHISCIVAHHLSRLPPF
RALRRDRALRMQIMACACAVGLASSFGTPIGGVLYALETTSSFYLVPTFW
KCVLATLSGSLVYDMLYKTPLVEAFDNTAFGDISYRGQLPAFMLLGALLG
LLGAFFVRCVHFVYLLRKRRLPGTNRYVLLFVVGLAAALVQYPFPNFRHD
PRHAINDFFSATEMNELSRVDVIILLLIKFPLIVISIGLPIPAGVFIPCF
LVGAGLGRLYGELLHLLFGQKIVAGGYAVVGAAAFTAGVTRALSVAVVIF
EVTGQLKHTMPTLAAVLISVIFANGINRSLYDALIIMKQLPYMPHMRRDR
TPDQKVHDIMRTDVVSLREVCSLVEIREALDRYPHFHSFPIVSNYGGLLG
STRRRSLLNLITRANVDGSPVNETPKSSEPDPIKTEASHRPEQEADLSTM
ESEEEQDQQKLLPENEPEYGQNTRTRIHPDLSPLIVTANTSLSQLHFMFV
MLMPTHAYVLIDGTLHGIVTRGDLVQSGETQSASSRNILSRLASV*

spliced messenger RNA

>Gchil1881.t1 ID=Gchil1881.t1|Name=Gchil1881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2088bp|location=Sequence derived from alignment at tig00004439_pilon:951829..953916+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCCAAACCTCCCCCTCCTCGCACGCCAGACCATGTCGACGAAGT
ACACTTCGCCTTTCTCGACGGCCATccgcactccgcccccgccgccctca
gccgcccccgccgccCGGTGCAGCCCAGCCAGCAGATCCAGCATCTGGCC
GGCACCTCCGCCCCCACTACCATCATTCACCTGGCTCGTCTTCTCGCCTT
TCTTGTACTGCTCGGTATCATTCCTTCCACCATTATCTTTCTGGTGGACA
TTTCCGTCCATAATGCGCTTGACTTGCGCGAGGGCATCATCCAACTCAAC
CTCCACCCCGCGCTTACCGTCTTTCTCTTCTGCCTCACCGGCGTTTTTCT
CTGTCTCGCCTCCACTTTCATCTGTCACCTATGTTCCACAGAGGCGGAGG
GCTCAGGCATTCCGGCCATGAAGTCGCTCATGTCCGGCTTCTACGACAAG
GTCAAGCCAGCCCTGTCGCTCTGGGCGCTGCTTGCCAAAACAATCGGTCT
CGTGTGCGCCATTGGCGGCGGTCTCCCCGTCGGTTGGGAGGGCCCTAATG
TTCATATCTCATGTATCGTTGCACATCATCTCTCTCGACTCCCTCCCTTC
CGAGCACTTCGTCGAGATCGCGCGCTGCGTATGCAAATAATGGCTTGTGC
CTGCGCCGTTGGTCTGGCATCCAGCTTCGGTACCCCTATCGGCGGTGTGC
TCTACGCCTTGGAAACCACCTCCTCCTTTTATCTTGTCCCCACTTTCTGG
AAGTGCGTTCTTGCCACCCTTTCAGGTTCGCTTGTCTATGATATGCTTTA
CAAAACCCCGCTGGTCGAAGCGTTTGACAACACCGCTTTTGGTGACATTT
CGTACAGAGGGCAGCTTCCGGCTTTCATGTTGCTTGGGGCCCTCTTGGGT
TTGCTTGGAGCGTTTTTCGTTCGATGTGTTCACTTCGTTTATCTCCTTCG
AAAGCGACGCCTTCCTGGCACCAACCGCTACGTTCTCCTCTTTGTCGTCG
GTCTTGCCGCAGCACTTGTTCAGTATCCGTTTCCAAACTTCCGTCACGAC
CCTCGTCATGCTATAAATGATTTCTTTTCCGCCACTGAGATGAACGAGCT
TTCGCGCGTAGACGTCATCATTCTCTTGCTTATCAAGTTTCCTCTCATCG
TCATTTCAATTGGTCTTCCTATTCCGGCTGGTGTGTTCATACCTTGCTTC
TTGGTTGGAGCTGGTTTGGGGCGTTTGTACGGCGAGCTTCTCCATCTGTT
ATTCGGCCAAAAGATCGTTGCCGGCGGGTATGCTGTTGTGGGAGCCGCAG
CCTTCACAGCTGGCGTGACCCGCGCACTTTCAGTCGCCGTGGTCATATTT
GAAGTTACTGGCCAGCTCAAGCATACAATGCCAACTCTGGCAGCAGTCCT
GATATCCGTTATTTTTGCCAATGGTATCAACCGTTCTCTGTACGACGCGC
TTATCATCATGAAGCAGCTACCCTATATGCCCCATATGAGAAGAGATAGG
ACGCCGGATCAGAAAGTACACGATATAATGCGGACGGACGTGGTGTCGCT
TCGAGAGGTGTGCTCTCTCGTGGAAATCCGCGAAGCTTTGGACAGGTATC
CACACTTTCACTCGTTTCCAATCGTGTCAAACTACGGGGGTCTACTAGGA
AGCACACGGCGCAGAAGTTTGCTGAATTTGATTACGCGAGCAAATGTCGA
TGGATCACCAGTGAACGAAACGCCCAAGTCTTCGGAGCCAGATCCTATAA
AAACTGAAGCGAGCCATCGACCAGAACAGGAAGCGGACTTATCTACGATG
GAAAGCGAAGAAGAGCAGGATCAGCAAAAGCTCTTACCAGAGAATGAACC
CGAATATGGTCAAAATACTCGAACAAGAATACATCCAGACCTTAGCCCTC
TGATTGTAACCGCAAATACCAGTTTGAGCCAGCTTCACTTCATGTTTGTC
ATGCTTATGCCTACACATGCATATGTTTTGATAGATGGCACGTTACATGG
TATTGTAACCCGCGGTGATTTGGTCCAAAGCGGTGAAACTCAAAGCGCAT
CGTCCCGAAATATCCTTTCTCGGCTAGCATCTGTGTAA

protein sequence of Gchil1881.t1

>Gchil1881.t1 ID=Gchil1881.t1|Name=Gchil1881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=696bp
MFPKPPPPRTPDHVDEVHFAFLDGHPHSAPAALSRPRRPVQPSQQIQHLA
GTSAPTTIIHLARLLAFLVLLGIIPSTIIFLVDISVHNALDLREGIIQLN
LHPALTVFLFCLTGVFLCLASTFICHLCSTEAEGSGIPAMKSLMSGFYDK
VKPALSLWALLAKTIGLVCAIGGGLPVGWEGPNVHISCIVAHHLSRLPPF
RALRRDRALRMQIMACACAVGLASSFGTPIGGVLYALETTSSFYLVPTFW
KCVLATLSGSLVYDMLYKTPLVEAFDNTAFGDISYRGQLPAFMLLGALLG
LLGAFFVRCVHFVYLLRKRRLPGTNRYVLLFVVGLAAALVQYPFPNFRHD
PRHAINDFFSATEMNELSRVDVIILLLIKFPLIVISIGLPIPAGVFIPCF
LVGAGLGRLYGELLHLLFGQKIVAGGYAVVGAAAFTAGVTRALSVAVVIF
EVTGQLKHTMPTLAAVLISVIFANGINRSLYDALIIMKQLPYMPHMRRDR
TPDQKVHDIMRTDVVSLREVCSLVEIREALDRYPHFHSFPIVSNYGGLLG
STRRRSLLNLITRANVDGSPVNETPKSSEPDPIKTEASHRPEQEADLSTM
ESEEEQDQQKLLPENEPEYGQNTRTRIHPDLSPLIVTANTSLSQLHFMFV
MLMPTHAYVLIDGTLHGIVTRGDLVQSGETQSASSRNILSRLASV*

mRNA from alignment at tig00004439_pilon:951829..953916+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1881.t1 ID=Gchil1881.t1|Name=Gchil1881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2088bp|location=Sequence derived from alignment at tig00004439_pilon:951829..953916+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCCAAACCTCCCCCTCCTCGCACGCCAGACCATGTCGACGAAGT
ACACTTCGCCTTTCTCGACGGCCATccgcactccgcccccgccgccctca
gccgcccccgccgccCGGTGCAGCCCAGCCAGCAGATCCAGCATCTGGCC
GGCACCTCCGCCCCCACTACCATCATTCACCTGGCTCGTCTTCTCGCCTT
TCTTGTACTGCTCGGTATCATTCCTTCCACCATTATCTTTCTGGTGGACA
TTTCCGTCCATAATGCGCTTGACTTGCGCGAGGGCATCATCCAACTCAAC
CTCCACCCCGCGCTTACCGTCTTTCTCTTCTGCCTCACCGGCGTTTTTCT
CTGTCTCGCCTCCACTTTCATCTGTCACCTATGTTCCACAGAGGCGGAGG
GCTCAGGCATTCCGGCCATGAAGTCGCTCATGTCCGGCTTCTACGACAAG
GTCAAGCCAGCCCTGTCGCTCTGGGCGCTGCTTGCCAAAACAATCGGTCT
CGTGTGCGCCATTGGCGGCGGTCTCCCCGTCGGTTGGGAGGGCCCTAATG
TTCATATCTCATGTATCGTTGCACATCATCTCTCTCGACTCCCTCCCTTC
CGAGCACTTCGTCGAGATCGCGCGCTGCGTATGCAAATAATGGCTTGTGC
CTGCGCCGTTGGTCTGGCATCCAGCTTCGGTACCCCTATCGGCGGTGTGC
TCTACGCCTTGGAAACCACCTCCTCCTTTTATCTTGTCCCCACTTTCTGG
AAGTGCGTTCTTGCCACCCTTTCAGGTTCGCTTGTCTATGATATGCTTTA
CAAAACCCCGCTGGTCGAAGCGTTTGACAACACCGCTTTTGGTGACATTT
CGTACAGAGGGCAGCTTCCGGCTTTCATGTTGCTTGGGGCCCTCTTGGGT
TTGCTTGGAGCGTTTTTCGTTCGATGTGTTCACTTCGTTTATCTCCTTCG
AAAGCGACGCCTTCCTGGCACCAACCGCTACGTTCTCCTCTTTGTCGTCG
GTCTTGCCGCAGCACTTGTTCAGTATCCGTTTCCAAACTTCCGTCACGAC
CCTCGTCATGCTATAAATGATTTCTTTTCCGCCACTGAGATGAACGAGCT
TTCGCGCGTAGACGTCATCATTCTCTTGCTTATCAAGTTTCCTCTCATCG
TCATTTCAATTGGTCTTCCTATTCCGGCTGGTGTGTTCATACCTTGCTTC
TTGGTTGGAGCTGGTTTGGGGCGTTTGTACGGCGAGCTTCTCCATCTGTT
ATTCGGCCAAAAGATCGTTGCCGGCGGGTATGCTGTTGTGGGAGCCGCAG
CCTTCACAGCTGGCGTGACCCGCGCACTTTCAGTCGCCGTGGTCATATTT
GAAGTTACTGGCCAGCTCAAGCATACAATGCCAACTCTGGCAGCAGTCCT
GATATCCGTTATTTTTGCCAATGGTATCAACCGTTCTCTGTACGACGCGC
TTATCATCATGAAGCAGCTACCCTATATGCCCCATATGAGAAGAGATAGG
ACGCCGGATCAGAAAGTACACGATATAATGCGGACGGACGTGGTGTCGCT
TCGAGAGGTGTGCTCTCTCGTGGAAATCCGCGAAGCTTTGGACAGGTATC
CACACTTTCACTCGTTTCCAATCGTGTCAAACTACGGGGGTCTACTAGGA
AGCACACGGCGCAGAAGTTTGCTGAATTTGATTACGCGAGCAAATGTCGA
TGGATCACCAGTGAACGAAACGCCCAAGTCTTCGGAGCCAGATCCTATAA
AAACTGAAGCGAGCCATCGACCAGAACAGGAAGCGGACTTATCTACGATG
GAAAGCGAAGAAGAGCAGGATCAGCAAAAGCTCTTACCAGAGAATGAACC
CGAATATGGTCAAAATACTCGAACAAGAATACATCCAGACCTTAGCCCTC
TGATTGTAACCGCAAATACCAGTTTGAGCCAGCTTCACTTCATGTTTGTC
ATGCTTATGCCTACACATGCATATGTTTTGATAGATGGCACGTTACATGG
TATTGTAACCCGCGGTGATTTGGTCCAAAGCGGTGAAACTCAAAGCGCAT
CGTCCCGAAATATCCTTTCTCGGCTAGCATCTGTGTAA

Coding sequence (CDS) from alignment at tig00004439_pilon:951829..953916+

>Gchil1881.t1 ID=Gchil1881.t1|Name=Gchil1881.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2088bp|location=Sequence derived from alignment at tig00004439_pilon:951829..953916+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTCCCAAACCTCCCCCTCCTCGCACGCCAGACCATGTCGACGAAGT
ACACTTCGCCTTTCTCGACGGCCATccgcactccgcccccgccgccctca
gccgcccccgccgccCGGTGCAGCCCAGCCAGCAGATCCAGCATCTGGCC
GGCACCTCCGCCCCCACTACCATCATTCACCTGGCTCGTCTTCTCGCCTT
TCTTGTACTGCTCGGTATCATTCCTTCCACCATTATCTTTCTGGTGGACA
TTTCCGTCCATAATGCGCTTGACTTGCGCGAGGGCATCATCCAACTCAAC
CTCCACCCCGCGCTTACCGTCTTTCTCTTCTGCCTCACCGGCGTTTTTCT
CTGTCTCGCCTCCACTTTCATCTGTCACCTATGTTCCACAGAGGCGGAGG
GCTCAGGCATTCCGGCCATGAAGTCGCTCATGTCCGGCTTCTACGACAAG
GTCAAGCCAGCCCTGTCGCTCTGGGCGCTGCTTGCCAAAACAATCGGTCT
CGTGTGCGCCATTGGCGGCGGTCTCCCCGTCGGTTGGGAGGGCCCTAATG
TTCATATCTCATGTATCGTTGCACATCATCTCTCTCGACTCCCTCCCTTC
CGAGCACTTCGTCGAGATCGCGCGCTGCGTATGCAAATAATGGCTTGTGC
CTGCGCCGTTGGTCTGGCATCCAGCTTCGGTACCCCTATCGGCGGTGTGC
TCTACGCCTTGGAAACCACCTCCTCCTTTTATCTTGTCCCCACTTTCTGG
AAGTGCGTTCTTGCCACCCTTTCAGGTTCGCTTGTCTATGATATGCTTTA
CAAAACCCCGCTGGTCGAAGCGTTTGACAACACCGCTTTTGGTGACATTT
CGTACAGAGGGCAGCTTCCGGCTTTCATGTTGCTTGGGGCCCTCTTGGGT
TTGCTTGGAGCGTTTTTCGTTCGATGTGTTCACTTCGTTTATCTCCTTCG
AAAGCGACGCCTTCCTGGCACCAACCGCTACGTTCTCCTCTTTGTCGTCG
GTCTTGCCGCAGCACTTGTTCAGTATCCGTTTCCAAACTTCCGTCACGAC
CCTCGTCATGCTATAAATGATTTCTTTTCCGCCACTGAGATGAACGAGCT
TTCGCGCGTAGACGTCATCATTCTCTTGCTTATCAAGTTTCCTCTCATCG
TCATTTCAATTGGTCTTCCTATTCCGGCTGGTGTGTTCATACCTTGCTTC
TTGGTTGGAGCTGGTTTGGGGCGTTTGTACGGCGAGCTTCTCCATCTGTT
ATTCGGCCAAAAGATCGTTGCCGGCGGGTATGCTGTTGTGGGAGCCGCAG
CCTTCACAGCTGGCGTGACCCGCGCACTTTCAGTCGCCGTGGTCATATTT
GAAGTTACTGGCCAGCTCAAGCATACAATGCCAACTCTGGCAGCAGTCCT
GATATCCGTTATTTTTGCCAATGGTATCAACCGTTCTCTGTACGACGCGC
TTATCATCATGAAGCAGCTACCCTATATGCCCCATATGAGAAGAGATAGG
ACGCCGGATCAGAAAGTACACGATATAATGCGGACGGACGTGGTGTCGCT
TCGAGAGGTGTGCTCTCTCGTGGAAATCCGCGAAGCTTTGGACAGGTATC
CACACTTTCACTCGTTTCCAATCGTGTCAAACTACGGGGGTCTACTAGGA
AGCACACGGCGCAGAAGTTTGCTGAATTTGATTACGCGAGCAAATGTCGA
TGGATCACCAGTGAACGAAACGCCCAAGTCTTCGGAGCCAGATCCTATAA
AAACTGAAGCGAGCCATCGACCAGAACAGGAAGCGGACTTATCTACGATG
GAAAGCGAAGAAGAGCAGGATCAGCAAAAGCTCTTACCAGAGAATGAACC
CGAATATGGTCAAAATACTCGAACAAGAATACATCCAGACCTTAGCCCTC
TGATTGTAACCGCAAATACCAGTTTGAGCCAGCTTCACTTCATGTTTGTC
ATGCTTATGCCTACACATGCATATGTTTTGATAGATGGCACGTTACATGG
TATTGTAACCCGCGGTGATTTGGTCCAAAGCGGTGAAACTCAAAGCGCAT
CGTCCCGAAATATCCTTTCTCGGCTAGCATCTGTGTAA