Gchil1877.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1877.t1
Unique NameGchil1877.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:840345..842051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123508.JH636452_gene7034
PFAMsAn_peroxidase,Dockerin_1,SdrD_B
Max annot lvl203682|Planctomycetes
Evalue2.69e-59
EggNOG OGsCOG2373@1|root,COG2373@2|Bacteria,2IY3Z@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1877Gchil1877Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 840345..842051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1877.t1Gchil1877.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 840345..842051 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1877.t1.start1Gchil1877.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 840345..840347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1877.t1.CDS1Gchil1877.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 840345..840872 +
Gchil1877.t1.CDS2Gchil1877.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 841002..841060 +
Gchil1877.t1.CDS3Gchil1877.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 841163..842051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1877.t1.exon1Gchil1877.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 840345..840872 +
Gchil1877.t1.exon2Gchil1877.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 841002..841060 +
Gchil1877.t1.exon3Gchil1877.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 841163..842051 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1877.t1.intron1Gchil1877.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 840873..841001 +
Gchil1877.t1.intron2Gchil1877.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 841061..841162 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1877.t1.stop1Gchil1877.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 842049..842051 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1877.t1 ID=Gchil1877.t1|Name=Gchil1877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp
MDFAIYVFLLSLIASSAHAQAPQPGVGIGASFFTALPPSPSRAPSFSLSA
AALETIDSECAALPTRTLTGRCTSALDPNLGEARRAQFSYLDVDSRNFAG
EGLKSARIISNIVSNQSGNTLNSLRLNELFVFFGQFIDHDFALSPLSDVE
MDIEVPENDPDLNVDHLRFERSSRGLTSAGNNLPFNTGGFANSPSTLLED
AFPNMTSGSMYETARAINIAQYQKIIYEEWLPAILGRSLPRYIGYKENIN
PTISVELTTAGFRVGHTMVGNGVSRIDSSGKILPIITMEDMFFRDSNLSG
EDIENFIRGAAGTRAQEVDTMVVDALRNFLFSSIPEEPGFDLIALNIQRG
RDHNVPRFNELRRFFLGAAADSFSQITSDSAVQQKLQDAYGSVDNVEAWP
GLMAEDKQGAVGLGRTNAELWRREFTRLRDGDRFFYLDNARHNQIPKAVL
DALPEINVGIFSSQSMFSRILRRTTSLKSGDISTGINVFRV*
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spliced messenger RNA

>Gchil1877.t1 ID=Gchil1877.t1|Name=Gchil1877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00004439_pilon:840345..842051+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTTGCCATATATGTGTTTTTGCTTTCTTTAATAGCTTCTTCCGC
CCATGCCCAAGCTCCTCAACCGGGCGTTGGAATCGGGGCAAGTTTTTTCA
CCGCTCTGCCACCGTCGCCTTCCCGAGCCCCGTCGTTTTCGCTGTCCGCG
GCAGCACTTGAAACCATCGACTCAGAATGCGCAGCTCTGCCAACTAGGAC
ACTCACTGGTCGCTGCACATCTGCTTTAGATCCAAATTTGGGAGAAGCTC
GCCGCGCGCAATTCAGTTATCTGGATGTAGATTCTAGGAATTTTGCTGGT
GAAGGGCTGAAGAGCGCTCGTATCATCTCTAACATAGTGTCGAATCAATC
GGGAAATACACTCAACTCACTTCGTCTAAATGAACTTTTTGTTTTCTTTG
GACAGTTTATTGATCACGACTTCGCGTTGTCACCACTTTCGGATGTAGAG
ATGGATATAGAAGTACCAGAAAATGACCCTGACTTGAATGTTGATCATCT
GCGATTTGAGCGTTCCTCGAGGGGACTGacatcTGCTGGTAACAATTTGC
CCTTCAACACAGGCGGCTTTGCCAACTCTCCATCTACtttgctcgaggat
gcgttcccaaacaTGACGTCTGGTAGTATGTATGAAACTGCACGAGCTAT
TAACATAGCCCAATATCAGAAGATCATCTACGAGGAATGGCTACCGGCCA
TTCTTGGTCGTTCGTTACCCCGCTACATTGGATACAAGGAAAACATCAAC
CCTACAATAAGTGTGGAACTTACCACGGCAGGATTCCGCGTGGGACACAC
AATGGTCGGCAATGGTGTGAGCAGAATCGACAGTTCTGGAAAAATACTAC
CAATTATTACGATGGAAGATATGTTCTTCCGTGACAGCAATCTTTCAGGT
GAAGATATTGAGAACTTTATCCGTGGAGCTGCAGGAACGCGGGCACAAGA
GGTTGACACGATGGTAGTTGACGCGCTTCGAAACTTTCTTTTCAGCAGTA
TTCCAGAGGAGCCAGGATTTGACCTTATTGCCCTCAATATTCAGAGAGGT
CGTGACCATAACGTGCCACGATTCAACGAGCTGCGGCGCTTCTTTCTCGG
TGCTGCTGCTGATTCGTTCAGCCAAATTACATCTGACTCTGCAGTTCAAC
AAAAGCTTCAGGATGCGTACGGCAGCGTGGATAATGTCGAGGCCTGGCCT
GGATTGATGGCGGAAGATAAGCAAGGGGCTGTCGGACTCGGTCGGACCAA
CGCCGAGTTGTGGAGGAGGGAATTCACACGACTTCGAGACGGAGACAGAT
TCTTTTATCTTGACAATGCTCGTCATAACCAGATCCCCAAGGCTGTCTTA
GACGCTCTTCCAGAAATCAATGTTGGTATTTTCTCCAGTCAATCCATGTT
CAGTCGCATTCTTCGACGCACAACTTCGCTAAAATCTGGTGACATATCCA
CGGGGATTAATGTATTCCGTGTGTGA
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protein sequence of Gchil1877.t1

>Gchil1877.t1 ID=Gchil1877.t1|Name=Gchil1877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=492bp
MDFAIYVFLLSLIASSAHAQAPQPGVGIGASFFTALPPSPSRAPSFSLSA
AALETIDSECAALPTRTLTGRCTSALDPNLGEARRAQFSYLDVDSRNFAG
EGLKSARIISNIVSNQSGNTLNSLRLNELFVFFGQFIDHDFALSPLSDVE
MDIEVPENDPDLNVDHLRFERSSRGLTSAGNNLPFNTGGFANSPSTLLED
AFPNMTSGSMYETARAINIAQYQKIIYEEWLPAILGRSLPRYIGYKENIN
PTISVELTTAGFRVGHTMVGNGVSRIDSSGKILPIITMEDMFFRDSNLSG
EDIENFIRGAAGTRAQEVDTMVVDALRNFLFSSIPEEPGFDLIALNIQRG
RDHNVPRFNELRRFFLGAAADSFSQITSDSAVQQKLQDAYGSVDNVEAWP
GLMAEDKQGAVGLGRTNAELWRREFTRLRDGDRFFYLDNARHNQIPKAVL
DALPEINVGIFSSQSMFSRILRRTTSLKSGDISTGINVFRV*
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mRNA from alignment at tig00004439_pilon:840345..842051+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1877.t1 ID=Gchil1877.t1|Name=Gchil1877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1707bp|location=Sequence derived from alignment at tig00004439_pilon:840345..842051+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACTTTGCCATATATGTGTTTTTGCTTTCTTTAATAGCTTCTTCCGC
CCATGCCCAAGCTCCTCAACCGGGCGTTGGAATCGGGGCAAGTTTTTTCA
CCGCTCTGCCACCGTCGCCTTCCCGAGCCCCGTCGTTTTCGCTGTCCGCG
GCAGCACTTGAAACCATCGACTCAGAATGCGCAGCTCTGCCAACTAGGAC
ACTCACTGGTCGCTGCACATCTGCTTTAGATCCAAATTTGGGAGAAGCTC
GCCGCGCGCAATTCAGTTATCTGGATGTAGATTCTAGGAATTTTGCTGGT
GAAGGGCTGAAGAGCGCTCGTATCATCTCTAACATAGTGTCGAATCAATC
GGGAAATACACTCAACTCACTTCGTCTAAATGAACTTTTTGTTTTCTTTG
GACAGTTTATTGATCACGACTTCGCGTTGTCACCACTTTCGGATGTAGAG
ATGGATATAGAAGTACCAGAAAATGACCCTGACTTGAATGTTGATCATCT
GCGATTTGAGCGTTCCTCGAGGGGACTGGTGAGTTCATCTTCGGAAAAAg
aacggcctattacagtactctcttcggctttggacctttcaaatgtatat
ggcgtcgatgagaagcgaaacgacttcttgaggttacccaactcatgtcg
ccttaagacatcTGCTGGTAACAATTTGCCCTTCAACACAGGCGGCTTTG
CCAACTCTCCATCTACGTCAGCTTTCCTATACatcgcaggggatacccga
gtcaacgagcaccctgttcttaccacgattcataccatttttcttcgcga
acacaacctcatttgcagtttgctcgaggatgcgttcccaaacaTGACGT
CTGGTAGTATGTATGAAACTGCACGAGCTATTAACATAGCCCAATATCAG
AAGATCATCTACGAGGAATGGCTACCGGCCATTCTTGGTCGTTCGTTACC
CCGCTACATTGGATACAAGGAAAACATCAACCCTACAATAAGTGTGGAAC
TTACCACGGCAGGATTCCGCGTGGGACACACAATGGTCGGCAATGGTGTG
AGCAGAATCGACAGTTCTGGAAAAATACTACCAATTATTACGATGGAAGA
TATGTTCTTCCGTGACAGCAATCTTTCAGGTGAAGATATTGAGAACTTTA
TCCGTGGAGCTGCAGGAACGCGGGCACAAGAGGTTGACACGATGGTAGTT
GACGCGCTTCGAAACTTTCTTTTCAGCAGTATTCCAGAGGAGCCAGGATT
TGACCTTATTGCCCTCAATATTCAGAGAGGTCGTGACCATAACGTGCCAC
GATTCAACGAGCTGCGGCGCTTCTTTCTCGGTGCTGCTGCTGATTCGTTC
AGCCAAATTACATCTGACTCTGCAGTTCAACAAAAGCTTCAGGATGCGTA
CGGCAGCGTGGATAATGTCGAGGCCTGGCCTGGATTGATGGCGGAAGATA
AGCAAGGGGCTGTCGGACTCGGTCGGACCAACGCCGAGTTGTGGAGGAGG
GAATTCACACGACTTCGAGACGGAGACAGATTCTTTTATCTTGACAATGC
TCGTCATAACCAGATCCCCAAGGCTGTCTTAGACGCTCTTCCAGAAATCA
ATGTTGGTATTTTCTCCAGTCAATCCATGTTCAGTCGCATTCTTCGACGC
ACAACTTCGCTAAAATCTGGTGACATATCCACGGGGATTAATGTATTCCG
TGTGTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:840345..842051+

>Gchil1877.t1 ID=Gchil1877.t1|Name=Gchil1877.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00004439_pilon:840345..842051+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACTTTGCCATATATGTGTTTTTGCTTTCTTTAATAGCTTCTTCCGC
CCATGCCCAAGCTCCTCAACCGGGCGTTGGAATCGGGGCAAGTTTTTTCA
CCGCTCTGCCACCGTCGCCTTCCCGAGCCCCGTCGTTTTCGCTGTCCGCG
GCAGCACTTGAAACCATCGACTCAGAATGCGCAGCTCTGCCAACTAGGAC
ACTCACTGGTCGCTGCACATCTGCTTTAGATCCAAATTTGGGAGAAGCTC
GCCGCGCGCAATTCAGTTATCTGGATGTAGATTCTAGGAATTTTGCTGGT
GAAGGGCTGAAGAGCGCTCGTATCATCTCTAACATAGTGTCGAATCAATC
GGGAAATACACTCAACTCACTTCGTCTAAATGAACTTTTTGTTTTCTTTG
GACAGTTTATTGATCACGACTTCGCGTTGTCACCACTTTCGGATGTAGAG
ATGGATATAGAAGTACCAGAAAATGACCCTGACTTGAATGTTGATCATCT
GCGATTTGAGCGTTCCTCGAGGGGACTGacatcTGCTGGTAACAATTTGC
CCTTCAACACAGGCGGCTTTGCCAACTCTCCATCTACtttgctcgaggat
gcgttcccaaacaTGACGTCTGGTAGTATGTATGAAACTGCACGAGCTAT
TAACATAGCCCAATATCAGAAGATCATCTACGAGGAATGGCTACCGGCCA
TTCTTGGTCGTTCGTTACCCCGCTACATTGGATACAAGGAAAACATCAAC
CCTACAATAAGTGTGGAACTTACCACGGCAGGATTCCGCGTGGGACACAC
AATGGTCGGCAATGGTGTGAGCAGAATCGACAGTTCTGGAAAAATACTAC
CAATTATTACGATGGAAGATATGTTCTTCCGTGACAGCAATCTTTCAGGT
GAAGATATTGAGAACTTTATCCGTGGAGCTGCAGGAACGCGGGCACAAGA
GGTTGACACGATGGTAGTTGACGCGCTTCGAAACTTTCTTTTCAGCAGTA
TTCCAGAGGAGCCAGGATTTGACCTTATTGCCCTCAATATTCAGAGAGGT
CGTGACCATAACGTGCCACGATTCAACGAGCTGCGGCGCTTCTTTCTCGG
TGCTGCTGCTGATTCGTTCAGCCAAATTACATCTGACTCTGCAGTTCAAC
AAAAGCTTCAGGATGCGTACGGCAGCGTGGATAATGTCGAGGCCTGGCCT
GGATTGATGGCGGAAGATAAGCAAGGGGCTGTCGGACTCGGTCGGACCAA
CGCCGAGTTGTGGAGGAGGGAATTCACACGACTTCGAGACGGAGACAGAT
TCTTTTATCTTGACAATGCTCGTCATAACCAGATCCCCAAGGCTGTCTTA
GACGCTCTTCCAGAAATCAATGTTGGTATTTTCTCCAGTCAATCCATGTT
CAGTCGCATTCTTCGACGCACAACTTCGCTAAAATCTGGTGACATATCCA
CGGGGATTAATGTATTCCGTGTGTGA
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