Gchil1875.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1875.t1
Unique NameGchil1875.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length614
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:755421..757448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1875Gchil1875Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 755421..757448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1875.t1Gchil1875.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 755421..757448 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1875.t1.stop1Gchil1875.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 755421..755423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1875.t1.CDS1Gchil1875.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 755421..756433 -
Gchil1875.t1.CDS2Gchil1875.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 756620..757448 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1875.t1.exon1Gchil1875.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 755421..756433 -
Gchil1875.t1.exon2Gchil1875.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 756620..757448 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1875.t1.intron1Gchil1875.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 756434..756619 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1875.t1.start1Gchil1875.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 757446..757448 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1875.t1 ID=Gchil1875.t1|Name=Gchil1875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=614bp
MSSKDRPRTRSQTGAPEPSQPSRILIRSRSHTGGSTGVPGGRTSRPPVSD
SKPPASGAGRASAAAQMLSPARDVTPHPSPAAVEEQLRSMREAQVILAEE
FDSLRKKVNDTATQDFSKDLRVLRADVNSILESLDGPSAFVKDVADKFSR
VQSRLETLEQTLMSGNDPAEPVALSHKGTKEETRQARRKRRHTDPEPSDS
SSSESDSSDSSVEVARRERSSRSKPSTATHGVIRARTNGRKYTGLKELKP
TNSLFKKLLSYRYYRLEDSPLDRTPREDQYHSVRGTSRASEGGVTCWPEA
VQYLLRSYATNSATQQAIRALRDTRQRPGESETDYSSRRNKAFHRCGNFY
PAEERCTIFVDGLDPAIRTRVAQRREDRPKATYLGLVQFARAEGEALRAC
TPGSRLRSAKAMMLQPGTPSASMIDEQDSRRDYDNVQLAHSDVHSIPTTE
LPSTLDESQYVTEDHTLLYADNGRVRAPRVPHESGNVRFSRPGWRDTRPA
VKFAEPRHPTPASGLICHLCYKLGHTSPQCVLSLREWAQVVVNYEALSLE
DKAAVPIASYIRARTDVPRHVSLPRARVVPAPESRVTDVVGHPTASAVPS
GPDVQALPDQRPE*
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spliced messenger RNA

>Gchil1875.t1 ID=Gchil1875.t1|Name=Gchil1875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1842bp|location=Sequence derived from alignment at tig00004439_pilon:755421..757448- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCAAAGACCGTCCGAGGACGCGGAGTCAAACCGGTGCACCGGA
ACCATCGCAACCATCCCGTATCCTGATCCGTTCACGGTCTCATACCGGTG
GATCGACTGGCGTGCCAGGTGGAAGGACCTCGAGACCTCCTGTCTCTGAT
TCGAAACCCCCAGCAAGTGGAGCAGGACGAGCGTCTGCCGCCGCCCAGAT
GCTCTCCCCTGCTAGGGATGTCACCCCCCATCCCAGCCCTGCAGCTGTGG
AAGAGCAACTCCGCTCTATGCGGGAAGCTCAAGTCATCCTTGCAGAGGAG
TTCGATTCCCTTCGCAAGAAGGTTAATGACACTGCTACGCAGGATTTTTC
TAAGGACCTCCGTGTCCTCCGTGCGGATGTGAACTCGATTCTGGAGTCCC
TTGATGGACCCTCGGCCTTTGTCAAGGACGTCGCGGACAAGTTCTCGCGC
GTCCAAAGCCGTCTCGAGACGTTGGAACAAACCCTGATGTCGGGGAATGA
TCCGGCCGAGCCGGTTGCATTATCGCACAAGGGAACTAAGGAAGAGACCC
GCCAGGCTCGAAGGAAGCGAAGACACACAGATCCCGAACCGTCAGACTCC
TCATCCTCGGAGTCCGACTCTTCCGATTCATCGGTGGAAGTAGCTCGCCG
TGAGCGTTCCTCACGCTCTAAGCCGTCAACAGCCACACATGGTGTGATCC
GCGCCCGCACGAATGGAAGGAAGTACACAGGTTTGAAGGAGCTGAAACCG
ACCAATTCGCTCTTTAAGAAGCTTTTATCATACCGGTACTACCGTTTGGA
GGACTCGCCTTTGGATCGTACACCCCGTGAAGACCAGTATCACTCTGTCA
GAGGTACATCACGCGCGTCCGAAGGAGGGGTAACCTGCTGGCCCGAAGCA
GTTCAGTACCTCCTGAGGTCGTATGCTACTAACTCCGCCACTCAGCAGGC
GATACGCGCCCTGCGGGACACTCGCCAACGTCCAGGCGAGTCGGAAACCG
ATTATTCGTCGCGCCGTAACAAGGCCTTCCACCGCTGTGGCAATTTTTAC
CCCGCTGAAGAGCGTTGTACCATCTTTGTCGATGGTTTGGACCCGGCGAT
CCGGACTCGTGTTGCTCAACGTCGAGAAGATAGACCTAAAGCCACGTATT
TGGGACTAGTGCAGTTCGCTCGCGCAGAAGGTGAAGCCCTGCGCGCATGC
ACTCCTGGATCCAGGCTTAGGTCCGCAAAAGCGATGATGTTACAACCGGG
TACCCCGTCAGCTTCGATGATCGACGAACAGGACTCTCGAAGGGATTATG
ATAACGTGCAGCTAGCCCATAGCGACGTTCATTCCATCCCGACAACGGAG
TTACCCTCAACCTTGGACGAATCGCAATACGTGACTGAGGATCACACGCT
ACTCTATGCGGATAATGGTCGCGTTCGTGCGCCACGCGTCCCACACGAGA
GTGGTAATGTCCGCTTTTCGCGTCCTGGTTGGAGAGATACCCGCCCCGCG
GTGAAGTTCGCCGAGCCTCGCCACCCAACGCCGGCTTCTGGTCTGATTTG
TCATTTGTGCTACAAACTAGGCCATACTTCTCCACAATGTGTGTTGTCCC
TCCGAGAATGGGCACAAGTCGTAGTCAATTACGAGGCCCTATCCCTGGAG
GACAAAGCAGCTGTTCCGATTGCATCGTATATCCGTGCTCGAACGGATGT
TCCACGTCACGTGTCGCTTCCCCGAGCTCGGGTCGTACCTGCACCGGAAT
CCCGTGTCACCGACGTGGTCGGTCACCCCACCGCTTCTGCGGTACCTTCT
GGACCGGATGTCCAGGCGTTGCCTGATCAACGTCCTGAGTAG
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protein sequence of Gchil1875.t1

>Gchil1875.t1 ID=Gchil1875.t1|Name=Gchil1875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=614bp
MSSKDRPRTRSQTGAPEPSQPSRILIRSRSHTGGSTGVPGGRTSRPPVSD
SKPPASGAGRASAAAQMLSPARDVTPHPSPAAVEEQLRSMREAQVILAEE
FDSLRKKVNDTATQDFSKDLRVLRADVNSILESLDGPSAFVKDVADKFSR
VQSRLETLEQTLMSGNDPAEPVALSHKGTKEETRQARRKRRHTDPEPSDS
SSSESDSSDSSVEVARRERSSRSKPSTATHGVIRARTNGRKYTGLKELKP
TNSLFKKLLSYRYYRLEDSPLDRTPREDQYHSVRGTSRASEGGVTCWPEA
VQYLLRSYATNSATQQAIRALRDTRQRPGESETDYSSRRNKAFHRCGNFY
PAEERCTIFVDGLDPAIRTRVAQRREDRPKATYLGLVQFARAEGEALRAC
TPGSRLRSAKAMMLQPGTPSASMIDEQDSRRDYDNVQLAHSDVHSIPTTE
LPSTLDESQYVTEDHTLLYADNGRVRAPRVPHESGNVRFSRPGWRDTRPA
VKFAEPRHPTPASGLICHLCYKLGHTSPQCVLSLREWAQVVVNYEALSLE
DKAAVPIASYIRARTDVPRHVSLPRARVVPAPESRVTDVVGHPTASAVPS
GPDVQALPDQRPE*
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mRNA from alignment at tig00004439_pilon:755421..757448-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1875.t1 ID=Gchil1875.t1|Name=Gchil1875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at tig00004439_pilon:755421..757448- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCAAAGACCGTCCGAGGACGCGGAGTCAAACCGGTGCACCGGA
ACCATCGCAACCATCCCGTATCCTGATCCGTTCACGGTCTCATACCGGTG
GATCGACTGGCGTGCCAGGTGGAAGGACCTCGAGACCTCCTGTCTCTGAT
TCGAAACCCCCAGCAAGTGGAGCAGGACGAGCGTCTGCCGCCGCCCAGAT
GCTCTCCCCTGCTAGGGATGTCACCCCCCATCCCAGCCCTGCAGCTGTGG
AAGAGCAACTCCGCTCTATGCGGGAAGCTCAAGTCATCCTTGCAGAGGAG
TTCGATTCCCTTCGCAAGAAGGTTAATGACACTGCTACGCAGGATTTTTC
TAAGGACCTCCGTGTCCTCCGTGCGGATGTGAACTCGATTCTGGAGTCCC
TTGATGGACCCTCGGCCTTTGTCAAGGACGTCGCGGACAAGTTCTCGCGC
GTCCAAAGCCGTCTCGAGACGTTGGAACAAACCCTGATGTCGGGGAATGA
TCCGGCCGAGCCGGTTGCATTATCGCACAAGGGAACTAAGGAAGAGACCC
GCCAGGCTCGAAGGAAGCGAAGACACACAGATCCCGAACCGTCAGACTCC
TCATCCTCGGAGTCCGACTCTTCCGATTCATCGGTGGAAGTAGCTCGCCG
TGAGCGTTCCTCACGCTCTAAGCCGTCAACAGCCACACATGGTGTGATCC
GCGCCCGCACGAATGGAAGGAAGTACACAGGTTTGAAGGAGCTGAAACCG
ACCAATTCGCTCTTTAAGAAGCTTTTATCATACCGGTACTACCGTTTGGA
GGACTCGCCTTTGGATCGTACACCCCGTGGTACGGGAAGAGTGAAGGACT
ACATTAAGCGAATTCAGCTCTCACTACGAAACCAGTTGTTTTCTGGAGAA
CACCCAATATTGGTGTTGGATTTCTTGGCACGCTTTGTCGCGGAAGCTGA
CATCCTTGGAATGAACGAGGGAGAGGCCTAAATTTACTTACCGTACTTCT
TACGTGGGCTTGCAGAAGACCAGTATCACTCTGTCAGAGGTACATCACGC
GCGTCCGAAGGAGGGGTAACCTGCTGGCCCGAAGCAGTTCAGTACCTCCT
GAGGTCGTATGCTACTAACTCCGCCACTCAGCAGGCGATACGCGCCCTGC
GGGACACTCGCCAACGTCCAGGCGAGTCGGAAACCGATTATTCGTCGCGC
CGTAACAAGGCCTTCCACCGCTGTGGCAATTTTTACCCCGCTGAAGAGCG
TTGTACCATCTTTGTCGATGGTTTGGACCCGGCGATCCGGACTCGTGTTG
CTCAACGTCGAGAAGATAGACCTAAAGCCACGTATTTGGGACTAGTGCAG
TTCGCTCGCGCAGAAGGTGAAGCCCTGCGCGCATGCACTCCTGGATCCAG
GCTTAGGTCCGCAAAAGCGATGATGTTACAACCGGGTACCCCGTCAGCTT
CGATGATCGACGAACAGGACTCTCGAAGGGATTATGATAACGTGCAGCTA
GCCCATAGCGACGTTCATTCCATCCCGACAACGGAGTTACCCTCAACCTT
GGACGAATCGCAATACGTGACTGAGGATCACACGCTACTCTATGCGGATA
ATGGTCGCGTTCGTGCGCCACGCGTCCCACACGAGAGTGGTAATGTCCGC
TTTTCGCGTCCTGGTTGGAGAGATACCCGCCCCGCGGTGAAGTTCGCCGA
GCCTCGCCACCCAACGCCGGCTTCTGGTCTGATTTGTCATTTGTGCTACA
AACTAGGCCATACTTCTCCACAATGTGTGTTGTCCCTCCGAGAATGGGCA
CAAGTCGTAGTCAATTACGAGGCCCTATCCCTGGAGGACAAAGCAGCTGT
TCCGATTGCATCGTATATCCGTGCTCGAACGGATGTTCCACGTCACGTGT
CGCTTCCCCGAGCTCGGGTCGTACCTGCACCGGAATCCCGTGTCACCGAC
GTGGTCGGTCACCCCACCGCTTCTGCGGTACCTTCTGGACCGGATGTCCA
GGCGTTGCCTGATCAACGTCCTGAGTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:755421..757448-

>Gchil1875.t1 ID=Gchil1875.t1|Name=Gchil1875.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1842bp|location=Sequence derived from alignment at tig00004439_pilon:755421..757448- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCAAAGACCGTCCGAGGACGCGGAGTCAAACCGGTGCACCGGA
ACCATCGCAACCATCCCGTATCCTGATCCGTTCACGGTCTCATACCGGTG
GATCGACTGGCGTGCCAGGTGGAAGGACCTCGAGACCTCCTGTCTCTGAT
TCGAAACCCCCAGCAAGTGGAGCAGGACGAGCGTCTGCCGCCGCCCAGAT
GCTCTCCCCTGCTAGGGATGTCACCCCCCATCCCAGCCCTGCAGCTGTGG
AAGAGCAACTCCGCTCTATGCGGGAAGCTCAAGTCATCCTTGCAGAGGAG
TTCGATTCCCTTCGCAAGAAGGTTAATGACACTGCTACGCAGGATTTTTC
TAAGGACCTCCGTGTCCTCCGTGCGGATGTGAACTCGATTCTGGAGTCCC
TTGATGGACCCTCGGCCTTTGTCAAGGACGTCGCGGACAAGTTCTCGCGC
GTCCAAAGCCGTCTCGAGACGTTGGAACAAACCCTGATGTCGGGGAATGA
TCCGGCCGAGCCGGTTGCATTATCGCACAAGGGAACTAAGGAAGAGACCC
GCCAGGCTCGAAGGAAGCGAAGACACACAGATCCCGAACCGTCAGACTCC
TCATCCTCGGAGTCCGACTCTTCCGATTCATCGGTGGAAGTAGCTCGCCG
TGAGCGTTCCTCACGCTCTAAGCCGTCAACAGCCACACATGGTGTGATCC
GCGCCCGCACGAATGGAAGGAAGTACACAGGTTTGAAGGAGCTGAAACCG
ACCAATTCGCTCTTTAAGAAGCTTTTATCATACCGGTACTACCGTTTGGA
GGACTCGCCTTTGGATCGTACACCCCGTGAAGACCAGTATCACTCTGTCA
GAGGTACATCACGCGCGTCCGAAGGAGGGGTAACCTGCTGGCCCGAAGCA
GTTCAGTACCTCCTGAGGTCGTATGCTACTAACTCCGCCACTCAGCAGGC
GATACGCGCCCTGCGGGACACTCGCCAACGTCCAGGCGAGTCGGAAACCG
ATTATTCGTCGCGCCGTAACAAGGCCTTCCACCGCTGTGGCAATTTTTAC
CCCGCTGAAGAGCGTTGTACCATCTTTGTCGATGGTTTGGACCCGGCGAT
CCGGACTCGTGTTGCTCAACGTCGAGAAGATAGACCTAAAGCCACGTATT
TGGGACTAGTGCAGTTCGCTCGCGCAGAAGGTGAAGCCCTGCGCGCATGC
ACTCCTGGATCCAGGCTTAGGTCCGCAAAAGCGATGATGTTACAACCGGG
TACCCCGTCAGCTTCGATGATCGACGAACAGGACTCTCGAAGGGATTATG
ATAACGTGCAGCTAGCCCATAGCGACGTTCATTCCATCCCGACAACGGAG
TTACCCTCAACCTTGGACGAATCGCAATACGTGACTGAGGATCACACGCT
ACTCTATGCGGATAATGGTCGCGTTCGTGCGCCACGCGTCCCACACGAGA
GTGGTAATGTCCGCTTTTCGCGTCCTGGTTGGAGAGATACCCGCCCCGCG
GTGAAGTTCGCCGAGCCTCGCCACCCAACGCCGGCTTCTGGTCTGATTTG
TCATTTGTGCTACAAACTAGGCCATACTTCTCCACAATGTGTGTTGTCCC
TCCGAGAATGGGCACAAGTCGTAGTCAATTACGAGGCCCTATCCCTGGAG
GACAAAGCAGCTGTTCCGATTGCATCGTATATCCGTGCTCGAACGGATGT
TCCACGTCACGTGTCGCTTCCCCGAGCTCGGGTCGTACCTGCACCGGAAT
CCCGTGTCACCGACGTGGTCGGTCACCCCACCGCTTCTGCGGTACCTTCT
GGACCGGATGTCCAGGCGTTGCCTGATCAACGTCCTGAGTAG
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