Gchil1858.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1858.t1
Unique Name	Gchil1858.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	534

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004439_pilon	contig	tig00004439_pilon:351003..352604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123060.JONP01000002_gene930
PFAMs	GMC_oxred_C,GMC_oxred_N
Max annot lvl	204441\|Rhodospirillales
Evalue	2.66e-38
EggNOG OGs	COG2303@1\|root,COG2303@2\|Bacteria,1MV19@1224\|Proteobacteria,2TQKQ@28211\|Alphaproteobacteria,2JVAC@204441\|Rhodospirillales
Description	GMC oxidoreductase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1858	Gchil1858	Gracilaria chilensis NLEC103_M9 male	gene	tig00004439_pilon 351003..352604 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1858.t1.start1	Gchil1858.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004439_pilon 351003..351005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1858.t1.CDS1	Gchil1858.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004439_pilon 351003..352604 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1858.t1.exon1	Gchil1858.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004439_pilon 351003..352604 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1858.t1.stop1	Gchil1858.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004439_pilon 352602..352604 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1858.t1	Gchil1858.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004439_pilon 351003..352604 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004439_pilon:351003..352604+
coding sequence from alignment at tig00004439_pilon:351003..352604+

mRNA sequence

>Gchil1858.t1 ID=Gchil1858.t1|Name=Gchil1858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp
MSRSSFFQTVFVLNVFLAAHAIADIYTDFLIVGGGTSGCVLAARLCTAFP
NLHVTLLERGLPRSAQSEFLVDAPRNLYQTWSDRSITEFFESLPDEGIGG
RVTPTLTGNTLGGSSSINGMQWTVPTTSSIQQWAISGLDSATAAFYFRRA
YETVGFAPPQSPLQYADDYVSAALNVGFQPSSDPISQPPTSVWQNRLAIT
QNFRRNDACTAYVESVKNGKCSQNLSIVQGETASNIIMEDVSGGGKRAIA
VDTISTADRISKNRFRARKEIISSAGPYGSPTLLQRSGIGSASTLSSAGI
VQLVSLPVGERSLTRASVGVSSTYTGVPDEPANNAQAVASAEERSKWEAG
RGGLLGTPVTAANGRVGDDGYFTATLVPFFPGNPELRTGCYHNTKQTGFV
RIRDSNAFSTPLLKNNLLRDPDDVGRLVRCLRKVAQIHQSFPPIFGMRLV
APENGTIDEQYVRQNANTGAHIVGGCAVGDVLTDELKVKGVEGLRVIDAS
AIPQMPVSAGPAASVYMLAEFMSDKIVSDHSGF*

spliced messenger RNA

>Gchil1858.t1 ID=Gchil1858.t1|Name=Gchil1858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00004439_pilon:351003..352604+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGGTCCAGCTTTTTCCAAACCGTATTTGTCCTCAATGTCTTTCT
TGCCGCTCATGCTATCGCGGACATCTACACAGACTTTCTAATTGTCGGTG
GTGGTACTTCGGGCTGCGTACTTGCAGCACGTCTCTGCACTGCGTTTCCA
AATCTACACGTCACTCTGCTAGAACGTGGACTCCCTCGATCCGCCCAGTC
CGAATTCCTCGTCGATGCTCCTCGAAATCTCTATCAAACCTGGTCAGATC
GTTCGATCACCGAATTTTTCGAATCTCTTCCAGATGAAGGAATAGGCGGA
AGGGTAACTCCCACACTCACAGGCAACACCTTGGGCGGATCATCTTCTAT
CAATGGCATGCAATGGACGGTCCCAACCACAAGTTCGATACAGCAATGGG
CAATTTCAGGTCTCGACTCAGCTACGGCAGCATTCTACTTCCGACGTGCA
TACGAAACCGTGGGATTTGCGCCCCCACAATCACCTCTTCAGTACGCAGA
TGATTACGTTAGTGCCGCTCTCAATGTGGGATTTCAGCCATCTAGTGATC
CTATTTCGCAGCCGCCGACGTCAGTCTGGCAAAACCGTCTAGCAATCACA
CAAAATTTCCGCCGGAACGATGCCTGTACGGCGTATGTAGAATCGGTGAA
GAACGGAAAATGTTCACAAAATCTGAGCATCGTTCAGGGTGAGACTGCGT
CGAACATCATCATGGAGGACGTATCGGGCGGTGGAAAACGAGCCATAGCG
GTCGATACGATTTCGACTGCTGATCGTATCTCAAAGAATCGTTTTCGGGC
GAGAAAGGAAATCATATCGTCTGCTGGACCTTATGGATCGCCTACACTAT
TGCAGCGGTCGGGGATAGGAAGCGCTTCTACTTTAAGCTCCGCTGGAATT
GTTCAACTAGTTAGCTTGCCTGTTGGTGAACGCTCTCTGACTCGGGCAAG
TGTGGGTGTGTCTTCTACATACACTGGAGTGCCTGACGAACCTGCAAATA
ATGCCCAGGCAGTGGCAAGCGCTGAGGAACGTTCAAAATGGGAGGCGGGA
CGTGGTGGACTATTGGGAACACCAGTAACGGCCGCAAATGGACGCGTGGG
AGATGATGGCTATTTCACAGCTACGTTGGTTCCGTTCTTCCCCGGAAATC
CAGAACTGAGAACAGGGTGTTATCACAACACAAAACAGACTGGCTTCGTT
CGAATTCGTGATTCCAATGCTTTTAGCACGCCGTTGTTGAAAAACAACCT
ACTCCGCGATCCAGACGATGTCGGTCGATTGGTACGATGTCTCCGAAAAG
TGGCTCAGATCCATCAAAGCTTTCCTCCAATATTTGGAATGAGACTTGTG
GCCCCTGAAAACGGTACTATAGACGAGCAGTACGTTAGACAGAATGCAAA
CACGGGGGCTCACATTGTCGGTGGGTGCGCTGTGGGAGACGTTTTGACGG
ATGAGTTGAAGGTGAAAGGAGTGGAAGGATTGAGGGTCATTGACGCATCG
GCAATACCGCAAATGCCTGTTTCAGCCGGCCCTGCCGCCTCCGTGTACAT
GTTGGCAGAATTCATGTCTGACAAGATTGTCTCCGACCATAGTGGCTTCT
GA

protein sequence of Gchil1858.t1

>Gchil1858.t1 ID=Gchil1858.t1|Name=Gchil1858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=534bp
MSRSSFFQTVFVLNVFLAAHAIADIYTDFLIVGGGTSGCVLAARLCTAFP
NLHVTLLERGLPRSAQSEFLVDAPRNLYQTWSDRSITEFFESLPDEGIGG
RVTPTLTGNTLGGSSSINGMQWTVPTTSSIQQWAISGLDSATAAFYFRRA
YETVGFAPPQSPLQYADDYVSAALNVGFQPSSDPISQPPTSVWQNRLAIT
QNFRRNDACTAYVESVKNGKCSQNLSIVQGETASNIIMEDVSGGGKRAIA
VDTISTADRISKNRFRARKEIISSAGPYGSPTLLQRSGIGSASTLSSAGI
VQLVSLPVGERSLTRASVGVSSTYTGVPDEPANNAQAVASAEERSKWEAG
RGGLLGTPVTAANGRVGDDGYFTATLVPFFPGNPELRTGCYHNTKQTGFV
RIRDSNAFSTPLLKNNLLRDPDDVGRLVRCLRKVAQIHQSFPPIFGMRLV
APENGTIDEQYVRQNANTGAHIVGGCAVGDVLTDELKVKGVEGLRVIDAS
AIPQMPVSAGPAASVYMLAEFMSDKIVSDHSGF*

mRNA from alignment at tig00004439_pilon:351003..352604+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1858.t1 ID=Gchil1858.t1|Name=Gchil1858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at tig00004439_pilon:351003..352604+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCGGTCCAGCTTTTTCCAAACCGTATTTGTCCTCAATGTCTTTCT
TGCCGCTCATGCTATCGCGGACATCTACACAGACTTTCTAATTGTCGGTG
GTGGTACTTCGGGCTGCGTACTTGCAGCACGTCTCTGCACTGCGTTTCCA
AATCTACACGTCACTCTGCTAGAACGTGGACTCCCTCGATCCGCCCAGTC
CGAATTCCTCGTCGATGCTCCTCGAAATCTCTATCAAACCTGGTCAGATC
GTTCGATCACCGAATTTTTCGAATCTCTTCCAGATGAAGGAATAGGCGGA
AGGGTAACTCCCACACTCACAGGCAACACCTTGGGCGGATCATCTTCTAT
CAATGGCATGCAATGGACGGTCCCAACCACAAGTTCGATACAGCAATGGG
CAATTTCAGGTCTCGACTCAGCTACGGCAGCATTCTACTTCCGACGTGCA
TACGAAACCGTGGGATTTGCGCCCCCACAATCACCTCTTCAGTACGCAGA
TGATTACGTTAGTGCCGCTCTCAATGTGGGATTTCAGCCATCTAGTGATC
CTATTTCGCAGCCGCCGACGTCAGTCTGGCAAAACCGTCTAGCAATCACA
CAAAATTTCCGCCGGAACGATGCCTGTACGGCGTATGTAGAATCGGTGAA
GAACGGAAAATGTTCACAAAATCTGAGCATCGTTCAGGGTGAGACTGCGT
CGAACATCATCATGGAGGACGTATCGGGCGGTGGAAAACGAGCCATAGCG
GTCGATACGATTTCGACTGCTGATCGTATCTCAAAGAATCGTTTTCGGGC
GAGAAAGGAAATCATATCGTCTGCTGGACCTTATGGATCGCCTACACTAT
TGCAGCGGTCGGGGATAGGAAGCGCTTCTACTTTAAGCTCCGCTGGAATT
GTTCAACTAGTTAGCTTGCCTGTTGGTGAACGCTCTCTGACTCGGGCAAG
TGTGGGTGTGTCTTCTACATACACTGGAGTGCCTGACGAACCTGCAAATA
ATGCCCAGGCAGTGGCAAGCGCTGAGGAACGTTCAAAATGGGAGGCGGGA
CGTGGTGGACTATTGGGAACACCAGTAACGGCCGCAAATGGACGCGTGGG
AGATGATGGCTATTTCACAGCTACGTTGGTTCCGTTCTTCCCCGGAAATC
CAGAACTGAGAACAGGGTGTTATCACAACACAAAACAGACTGGCTTCGTT
CGAATTCGTGATTCCAATGCTTTTAGCACGCCGTTGTTGAAAAACAACCT
ACTCCGCGATCCAGACGATGTCGGTCGATTGGTACGATGTCTCCGAAAAG
TGGCTCAGATCCATCAAAGCTTTCCTCCAATATTTGGAATGAGACTTGTG
GCCCCTGAAAACGGTACTATAGACGAGCAGTACGTTAGACAGAATGCAAA
CACGGGGGCTCACATTGTCGGTGGGTGCGCTGTGGGAGACGTTTTGACGG
ATGAGTTGAAGGTGAAAGGAGTGGAAGGATTGAGGGTCATTGACGCATCG
GCAATACCGCAAATGCCTGTTTCAGCCGGCCCTGCCGCCTCCGTGTACAT
GTTGGCAGAATTCATGTCTGACAAGATTGTCTCCGACCATAGTGGCTTCT
GA

Coding sequence (CDS) from alignment at tig00004439_pilon:351003..352604+

>Gchil1858.t1 ID=Gchil1858.t1|Name=Gchil1858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1602bp|location=Sequence derived from alignment at tig00004439_pilon:351003..352604+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCGGTCCAGCTTTTTCCAAACCGTATTTGTCCTCAATGTCTTTCT
TGCCGCTCATGCTATCGCGGACATCTACACAGACTTTCTAATTGTCGGTG
GTGGTACTTCGGGCTGCGTACTTGCAGCACGTCTCTGCACTGCGTTTCCA
AATCTACACGTCACTCTGCTAGAACGTGGACTCCCTCGATCCGCCCAGTC
CGAATTCCTCGTCGATGCTCCTCGAAATCTCTATCAAACCTGGTCAGATC
GTTCGATCACCGAATTTTTCGAATCTCTTCCAGATGAAGGAATAGGCGGA
AGGGTAACTCCCACACTCACAGGCAACACCTTGGGCGGATCATCTTCTAT
CAATGGCATGCAATGGACGGTCCCAACCACAAGTTCGATACAGCAATGGG
CAATTTCAGGTCTCGACTCAGCTACGGCAGCATTCTACTTCCGACGTGCA
TACGAAACCGTGGGATTTGCGCCCCCACAATCACCTCTTCAGTACGCAGA
TGATTACGTTAGTGCCGCTCTCAATGTGGGATTTCAGCCATCTAGTGATC
CTATTTCGCAGCCGCCGACGTCAGTCTGGCAAAACCGTCTAGCAATCACA
CAAAATTTCCGCCGGAACGATGCCTGTACGGCGTATGTAGAATCGGTGAA
GAACGGAAAATGTTCACAAAATCTGAGCATCGTTCAGGGTGAGACTGCGT
CGAACATCATCATGGAGGACGTATCGGGCGGTGGAAAACGAGCCATAGCG
GTCGATACGATTTCGACTGCTGATCGTATCTCAAAGAATCGTTTTCGGGC
GAGAAAGGAAATCATATCGTCTGCTGGACCTTATGGATCGCCTACACTAT
TGCAGCGGTCGGGGATAGGAAGCGCTTCTACTTTAAGCTCCGCTGGAATT
GTTCAACTAGTTAGCTTGCCTGTTGGTGAACGCTCTCTGACTCGGGCAAG
TGTGGGTGTGTCTTCTACATACACTGGAGTGCCTGACGAACCTGCAAATA
ATGCCCAGGCAGTGGCAAGCGCTGAGGAACGTTCAAAATGGGAGGCGGGA
CGTGGTGGACTATTGGGAACACCAGTAACGGCCGCAAATGGACGCGTGGG
AGATGATGGCTATTTCACAGCTACGTTGGTTCCGTTCTTCCCCGGAAATC
CAGAACTGAGAACAGGGTGTTATCACAACACAAAACAGACTGGCTTCGTT
CGAATTCGTGATTCCAATGCTTTTAGCACGCCGTTGTTGAAAAACAACCT
ACTCCGCGATCCAGACGATGTCGGTCGATTGGTACGATGTCTCCGAAAAG
TGGCTCAGATCCATCAAAGCTTTCCTCCAATATTTGGAATGAGACTTGTG
GCCCCTGAAAACGGTACTATAGACGAGCAGTACGTTAGACAGAATGCAAA
CACGGGGGCTCACATTGTCGGTGGGTGCGCTGTGGGAGACGTTTTGACGG
ATGAGTTGAAGGTGAAAGGAGTGGAAGGATTGAGGGTCATTGACGCATCG
GCAATACCGCAAATGCCTGTTTCAGCCGGCCCTGCCGCCTCCGTGTACAT
GTTGGCAGAATTCATGTCTGACAAGATTGTCTCCGACCATAGTGGCTTCT
GA