Gchil1841.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1841.t1
Unique Name	Gchil1841.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	265

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2939888..2940682 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010241237.1
PFAMs	Ribosomal_S5,Ribosomal_S5_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02981
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue	3.29e-117
EggNOG OGs	COG0098@1\|root,KOG0877@2759\|Eukaryota,37QF0@33090\|Viridiplantae,3GC84@35493\|Streptophyta
Description	Belongs to the universal ribosomal protein uS5 family
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1841	Gchil1841	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2939888..2940682 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1841.t1.start1	Gchil1841.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2939888..2939890 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1841.t1.CDS1	Gchil1841.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2939888..2940682 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1841.t1.exon1	Gchil1841.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2939888..2940682 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1841.t1.stop1	Gchil1841.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2940680..2940682 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1841.t1	Gchil1841.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2939888..2940682 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2939888..2940682+
coding sequence from alignment at tig00004403_pilon:2939888..2940682+

mRNA sequence

>Gchil1841.t1 ID=Gchil1841.t1|Name=Gchil1841.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=265bp
MAESGRGGHPGGFGRGGERGRGRDRGRGRGRGRRQEEEKEWIPMTKLGRL
VKEGHIRSLEEIFLFSIPVKEHQIIETLLSGLQDEVLKIMAVQKQTRAGQ
RTRFKAFVVVGDSKGHVGLGVKSAKEVATAIRGAIVNSKLNIVPVRRGYW
GAAIDQPHTVPCKVTGKCGSVSVRLVPAPRGTGLVAARVPKKLLQMAGLE
DCFSSSTGHTRTLGNFAKATFYAIAQTYAYLSPEFWRETRFAKNPFQVYS
EMLSKAAPVPTIGA*

spliced messenger RNA

>Gchil1841.t1 ID=Gchil1841.t1|Name=Gchil1841.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004403_pilon:2939888..2940682+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAATCTGGTAGGGGTGGGCATCCTGGTGGGTTTgggcgcggcgg
cgaacggggtcgcggacgagatcgcggccgcggccgtggccgcggccgcC
GTCAGGAGGAAGAGAAAGAATGGATTCCAATGACAAAGCTCGGACGTTTG
GTAAAAGAAGGTCACATCCGATCTCTTGAGGAGATCTTCTTGTTCTCTAT
ACCAGTCAAGGAACATCAGATCATTGAAACACTGCTCTCTGGCCTCCAGG
ATGAAGTTCTCAAGATTATGGCTGTGCAGAAGCAGACTCGTGCGGGGCAA
CGTACTCGCTTCAAGGCTTTTGTCGTCGTGGGCGACTCCAAGGGTCACGT
GGGTCTTGGCGTTAAATCGGCAAAGGAAGTTGCAACCGCCATTCGCGGGG
CAATAGTTAACTCCAAACTGAACATTGTTCCAGTTCGTCGTGGTTATTGG
GGAGCAGCAATCGATCAGCCTCACACCGTTCCGTGTAAGGTAACCGGAAA
GTGTGGCTCTGTCAGTGTCAGACTTGTTCCAGCTCCGCGTGGCACTGGTC
TTGTCGCTGCTCGGGTTCCAAAGAAGTTGTTGCAAATGGCTGGTCTAGAG
GATTGTTTCTCCTCTTCTACAGGACATACTCGCACGCTTGGGAACTTTGC
GAAGGCGACCTTTTACGCTATTGCGCAGACATACGCGTACCTATCCCCAG
AGTTCTGGAGAGAGACTCGATTTGCTAAGAATCCGTTTCAAGTCTACTCG
GAGATGCTATCAAAGGCGGCGCCAGTTCCTACAATTGGCGCCTAA

protein sequence of Gchil1841.t1

>Gchil1841.t1 ID=Gchil1841.t1|Name=Gchil1841.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MAESGRGGHPGGFGRGGERGRGRDRGRGRGRGRRQEEEKEWIPMTKLGRL
VKEGHIRSLEEIFLFSIPVKEHQIIETLLSGLQDEVLKIMAVQKQTRAGQ
RTRFKAFVVVGDSKGHVGLGVKSAKEVATAIRGAIVNSKLNIVPVRRGYW
GAAIDQPHTVPCKVTGKCGSVSVRLVPAPRGTGLVAARVPKKLLQMAGLE
DCFSSSTGHTRTLGNFAKATFYAIAQTYAYLSPEFWRETRFAKNPFQVYS
EMLSKAAPVPTIGA*

mRNA from alignment at tig00004403_pilon:2939888..2940682+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1841.t1 ID=Gchil1841.t1|Name=Gchil1841.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004403_pilon:2939888..2940682+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGAATCTGGTAGGGGTGGGCATCCTGGTGGGTTTgggcgcggcgg
cgaacggggtcgcggacgagatcgcggccgcggccgtggccgcggccgcC
GTCAGGAGGAAGAGAAAGAATGGATTCCAATGACAAAGCTCGGACGTTTG
GTAAAAGAAGGTCACATCCGATCTCTTGAGGAGATCTTCTTGTTCTCTAT
ACCAGTCAAGGAACATCAGATCATTGAAACACTGCTCTCTGGCCTCCAGG
ATGAAGTTCTCAAGATTATGGCTGTGCAGAAGCAGACTCGTGCGGGGCAA
CGTACTCGCTTCAAGGCTTTTGTCGTCGTGGGCGACTCCAAGGGTCACGT
GGGTCTTGGCGTTAAATCGGCAAAGGAAGTTGCAACCGCCATTCGCGGGG
CAATAGTTAACTCCAAACTGAACATTGTTCCAGTTCGTCGTGGTTATTGG
GGAGCAGCAATCGATCAGCCTCACACCGTTCCGTGTAAGGTAACCGGAAA
GTGTGGCTCTGTCAGTGTCAGACTTGTTCCAGCTCCGCGTGGCACTGGTC
TTGTCGCTGCTCGGGTTCCAAAGAAGTTGTTGCAAATGGCTGGTCTAGAG
GATTGTTTCTCCTCTTCTACAGGACATACTCGCACGCTTGGGAACTTTGC
GAAGGCGACCTTTTACGCTATTGCGCAGACATACGCGTACCTATCCCCAG
AGTTCTGGAGAGAGACTCGATTTGCTAAGAATCCGTTTCAAGTCTACTCG
GAGATGCTATCAAAGGCGGCGCCAGTTCCTACAATTGGCGCCTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:2939888..2940682+

>Gchil1841.t1 ID=Gchil1841.t1|Name=Gchil1841.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00004403_pilon:2939888..2940682+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGAATCTGGTAGGGGTGGGCATCCTGGTGGGTTTgggcgcggcgg
cgaacggggtcgcggacgagatcgcggccgcggccgtggccgcggccgcC
GTCAGGAGGAAGAGAAAGAATGGATTCCAATGACAAAGCTCGGACGTTTG
GTAAAAGAAGGTCACATCCGATCTCTTGAGGAGATCTTCTTGTTCTCTAT
ACCAGTCAAGGAACATCAGATCATTGAAACACTGCTCTCTGGCCTCCAGG
ATGAAGTTCTCAAGATTATGGCTGTGCAGAAGCAGACTCGTGCGGGGCAA
CGTACTCGCTTCAAGGCTTTTGTCGTCGTGGGCGACTCCAAGGGTCACGT
GGGTCTTGGCGTTAAATCGGCAAAGGAAGTTGCAACCGCCATTCGCGGGG
CAATAGTTAACTCCAAACTGAACATTGTTCCAGTTCGTCGTGGTTATTGG
GGAGCAGCAATCGATCAGCCTCACACCGTTCCGTGTAAGGTAACCGGAAA
GTGTGGCTCTGTCAGTGTCAGACTTGTTCCAGCTCCGCGTGGCACTGGTC
TTGTCGCTGCTCGGGTTCCAAAGAAGTTGTTGCAAATGGCTGGTCTAGAG
GATTGTTTCTCCTCTTCTACAGGACATACTCGCACGCTTGGGAACTTTGC
GAAGGCGACCTTTTACGCTATTGCGCAGACATACGCGTACCTATCCCCAG
AGTTCTGGAGAGAGACTCGATTTGCTAAGAATCCGTTTCAAGTCTACTCG
GAGATGCTATCAAAGGCGGCGCCAGTTCCTACAATTGGCGCCTAA