Gchil1835.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1835.t1
Unique NameGchil1835.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2871301..2871881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1835Gchil1835Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2871301..2871881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1835.t1Gchil1835.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2871301..2871881 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1835.t1.stop1Gchil1835.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2871301..2871303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1835.t1.CDS1Gchil1835.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2871301..2871785 -
Gchil1835.t1.CDS2Gchil1835.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2871863..2871881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1835.t1.exon1Gchil1835.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2871301..2871785 -
Gchil1835.t1.exon2Gchil1835.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2871863..2871881 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1835.t1.intron1Gchil1835.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2871786..2871862 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1835.t1.start1Gchil1835.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2871879..2871881 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1835.t1 ID=Gchil1835.t1|Name=Gchil1835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=168bp
MLQSQILRLLFPFTFVFSLGVPTILLITAGNSPIDGTQTQLHPILAPHLF
LMICQILIETVGFIFSSSFTLYVRFGSTVAFVVYRIPVAFEWYRRAEQYA
HSEDAAMLPPTILPLTQAAAILNIVYWLFALLCFLLLYCLPAILRNPQVV
IRREKNEQSTPEAVKED*
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spliced messenger RNA

>Gchil1835.t1 ID=Gchil1835.t1|Name=Gchil1835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00004403_pilon:2871301..2871881- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCAATCGCAAATTTTAAGATTACTTTTCCCCTTTACATTTGTATT
TTCTCTAGGCGTACCAACAATACTACTCATCACAGCCGGTAACTCCCCAA
TCGATGGCACACAGACACAACTTCATCCGATTCTCGCCCCACATCTCTTT
CTAATGATCTGTCAAATCCTGATTGAGACAGTAGGCTTCATCTTTTCTAG
CTCATTCACGCTCTACGTGCGTTTCGGTTCCACCGTTGCATTCGTAGTAT
ACCGCATTCCCGTCGCTTTCGAATGGTACCGCCGGGCTGAGCAATATGCA
CATTCAGAAGACGCAGCTATGCTCCCACCTACAATTCTTCCCCTGACGCA
GGCAGCCGCAATCCTCAACATCGTGTACTGGTTATTTGCACTTTTATGCT
TCCTCTTGCTCTACTGTCTTCCGGCAATCCTCCGAAACCCACAAGTAGTA
ATCAGACGCGAGAAGAACGAGCAATCAACCCCCGAGGCCGTAAAAGAAGA
TTAA
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protein sequence of Gchil1835.t1

>Gchil1835.t1 ID=Gchil1835.t1|Name=Gchil1835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MLQSQILRLLFPFTFVFSLGVPTILLITAGNSPIDGTQTQLHPILAPHLF
LMICQILIETVGFIFSSSFTLYVRFGSTVAFVVYRIPVAFEWYRRAEQYA
HSEDAAMLPPTILPLTQAAAILNIVYWLFALLCFLLLYCLPAILRNPQVV
IRREKNEQSTPEAVKED*
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mRNA from alignment at tig00004403_pilon:2871301..2871881-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1835.t1 ID=Gchil1835.t1|Name=Gchil1835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=581bp|location=Sequence derived from alignment at tig00004403_pilon:2871301..2871881- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCAATCGCAAATTTGTACGTACGACGTACATACAATTTCCTACAG
TTCGCACCGCCCACCGCAAGTTCTCTCACTCCCATGCGTAATTCAGTAAG
ATTACTTTTCCCCTTTACATTTGTATTTTCTCTAGGCGTACCAACAATAC
TACTCATCACAGCCGGTAACTCCCCAATCGATGGCACACAGACACAACTT
CATCCGATTCTCGCCCCACATCTCTTTCTAATGATCTGTCAAATCCTGAT
TGAGACAGTAGGCTTCATCTTTTCTAGCTCATTCACGCTCTACGTGCGTT
TCGGTTCCACCGTTGCATTCGTAGTATACCGCATTCCCGTCGCTTTCGAA
TGGTACCGCCGGGCTGAGCAATATGCACATTCAGAAGACGCAGCTATGCT
CCCACCTACAATTCTTCCCCTGACGCAGGCAGCCGCAATCCTCAACATCG
TGTACTGGTTATTTGCACTTTTATGCTTCCTCTTGCTCTACTGTCTTCCG
GCAATCCTCCGAAACCCACAAGTAGTAATCAGACGCGAGAAGAACGAGCA
ATCAACCCCCGAGGCCGTAAAAGAAGATTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2871301..2871881-

>Gchil1835.t1 ID=Gchil1835.t1|Name=Gchil1835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00004403_pilon:2871301..2871881- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCAATCGCAAATTTTAAGATTACTTTTCCCCTTTACATTTGTATT
TTCTCTAGGCGTACCAACAATACTACTCATCACAGCCGGTAACTCCCCAA
TCGATGGCACACAGACACAACTTCATCCGATTCTCGCCCCACATCTCTTT
CTAATGATCTGTCAAATCCTGATTGAGACAGTAGGCTTCATCTTTTCTAG
CTCATTCACGCTCTACGTGCGTTTCGGTTCCACCGTTGCATTCGTAGTAT
ACCGCATTCCCGTCGCTTTCGAATGGTACCGCCGGGCTGAGCAATATGCA
CATTCAGAAGACGCAGCTATGCTCCCACCTACAATTCTTCCCCTGACGCA
GGCAGCCGCAATCCTCAACATCGTGTACTGGTTATTTGCACTTTTATGCT
TCCTCTTGCTCTACTGTCTTCCGGCAATCCTCCGAAACCCACAAGTAGTA
ATCAGACGCGAGAAGAACGAGCAATCAACCCCCGAGGCCGTAAAAGAAGA
TTAA
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