Gchil1832.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1832.t1
Unique NameGchil1832.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2816302..2817762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1832Gchil1832Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2816302..2817762 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1832.t1.start1Gchil1832.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2816302..2816304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1832.t1.CDS1Gchil1832.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2816302..2817762 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1832.t1.exon1Gchil1832.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2816302..2817762 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1832.t1.stop1Gchil1832.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2817760..2817762 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1832.t1Gchil1832.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2816302..2817762 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1832.t1 ID=Gchil1832.t1|Name=Gchil1832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=487bp
MSNLDLLIQASVLVESKKLHSMDKFEALHGELNASVEARMSTWAAISDLL
SSAQCTLHYLKQLKQRKEVHFKMHECEKEFSCILSSVLQLYNQERKLLHA
VKRQIIDVFAGKNGLAQSCAKRGGDERRFESAEAVEVTTAEGLVFPSDVG
RAGEAVRATQAVRATQAVRATQAVRATQAGRATPAVWETQAVWTTEAVRG
TEAVEAEEIEAEAMKEGAMEAGSMEAGSMKAEAIQPQGVEAEAIQPEAME
AEAVRGVKVEDTGAVQGVEANDKLCIEPVLAPKDRRSFSPPGQKNMATQT
MLKKAFCVTGDRGSGGPDASQAVRERSEGGAHGDETRRMERKTGLKRGEA
DVGDGEAPRAAESSEDSQEAHETRWKRERAAGGSAGGAQVRSRRRRCTDS
GGEGAAPATKRRRINWTAEENRTFIALVCRFKRLGEAEMRRCVAKHFAAR
RTHEQCANHLRILRAKGVLPPGEDGGGEKGGREVRR*
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spliced messenger RNA

>Gchil1832.t1 ID=Gchil1832.t1|Name=Gchil1832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00004403_pilon:2816302..2817762+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAACCTGGATCTGTTGATTCAGGCTTCGGTGCTAGTGGAGTCCAA
AAAGCTGCACAGCATGGACAAGTTTGAGGCGCTGCACGGTGAGCTCAACG
CATCTGTGGAGGCACGCATGTCCACCTGGGCGGCCATCAGCGACCTACTC
TCCTCCGCGCAGTGCACGCTGCACTACTTGAAGCAGCTTAAACAGCGAAA
GGAAGTACACTTTAAAATGCACGAGTGCGAGAAGGAATTCTCGTGTATCT
TAAGTTCAGTGTTGCAGTTGTACAACCAAGAGCGCAAGTTGCTGCACGCA
GTGAAACGGCAGATCATTGACGTGTTTGCAGGCAAGAACGGTTTGGCGCA
AAGCTGTGCTAAAAGAGGTGGTGATGAGAGGAGGTTCGAGAGTGCGGAGG
CCGTGGAGGTCACGACAGCTGAAGGGCTCGTCTTCCCCTCGGACGTCGGA
AGGGCAGGCGAAGCGGTCAGGGCGACGCAGGCCGTTAGGGCGACGCAGGC
CGTTAGGGCGACGCAGGCCGTTAGGGcgacgcaggccggtagggcgacgc
cggccgtttgggagacgcaggccgtttggaccaccgaagctgtgaggggg
acggaggccgtcgaggccgaggagatcgaggcggaggctatgaaggaggg
ggctatggaggcggGGTCTATGGAGGCGGGGTCGATGAAGGCGGAGGCTA
TACAGCCGCAGGGTGTGGAGGCGGAGGCTATACAGCCAGAGGCTATGGAG
GCTGAGGCTGTGCGTGGCGTCAAGGTCGAGGACACGGGTGCGGTACAAGG
CGTTGAGGCAAACGACAAGCTATGCATAGAGCCAGTACTGGCGCCCAAGG
ACAGAAGGAGCTTCAGTCCGCCAGGGCAGAAGAACATGGCAACGCAAACT
ATGTTAAAGAAGGCATTTTGCGTGACAGGCGACAGGGGCAGCGGAGGGCC
CGACGCGTCTCAGGCTGTGCGAGAGCGATCTGAAGGGGGTGCACACGGAG
ATGAGACGAGGCGCATGGAGAGGAAAACGGGATTGAAGAGAGGGGAGGCG
GATGTGGGAGATGGAGAGGCGCCACGGGCGGCGGAAAGCAGCGAGGACAG
CCAAGAGGCTCATGAGACGCGCTGGAAGCGCGAAAGAGCAGCAGGCGGCA
GCGCAGGTGGGGCGCAGGTCAGAAGCAGAAGGCGGCGGTGCACAGACAGC
GGGGGTGAAGGGGCGGCGCCGGCGACGAAACGACGGCGCATCAACTGGAC
GGCCGAAGAGAATCGCACTTTCATTGCGTTGGTGTGCAGATTCAAGCGGC
TGGGGGAGGCGGAGATGAGACGATGCGTGGCAAAACACTTTGCCGCGCGG
CGTACACATGAGCAGTGCGCGAATCATTTGCGCATCTTGCGCGCGAAGGG
CGTGCTGCCGCCGGGAGAAGACGGCGGCGGGGAGAAGGGCGGCCGTGAGG
TGCGGCGCTGA
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protein sequence of Gchil1832.t1

>Gchil1832.t1 ID=Gchil1832.t1|Name=Gchil1832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=487bp
MSNLDLLIQASVLVESKKLHSMDKFEALHGELNASVEARMSTWAAISDLL
SSAQCTLHYLKQLKQRKEVHFKMHECEKEFSCILSSVLQLYNQERKLLHA
VKRQIIDVFAGKNGLAQSCAKRGGDERRFESAEAVEVTTAEGLVFPSDVG
RAGEAVRATQAVRATQAVRATQAVRATQAGRATPAVWETQAVWTTEAVRG
TEAVEAEEIEAEAMKEGAMEAGSMEAGSMKAEAIQPQGVEAEAIQPEAME
AEAVRGVKVEDTGAVQGVEANDKLCIEPVLAPKDRRSFSPPGQKNMATQT
MLKKAFCVTGDRGSGGPDASQAVRERSEGGAHGDETRRMERKTGLKRGEA
DVGDGEAPRAAESSEDSQEAHETRWKRERAAGGSAGGAQVRSRRRRCTDS
GGEGAAPATKRRRINWTAEENRTFIALVCRFKRLGEAEMRRCVAKHFAAR
RTHEQCANHLRILRAKGVLPPGEDGGGEKGGREVRR*
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mRNA from alignment at tig00004403_pilon:2816302..2817762+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1832.t1 ID=Gchil1832.t1|Name=Gchil1832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00004403_pilon:2816302..2817762+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAACCTGGATCTGTTGATTCAGGCTTCGGTGCTAGTGGAGTCCAA
AAAGCTGCACAGCATGGACAAGTTTGAGGCGCTGCACGGTGAGCTCAACG
CATCTGTGGAGGCACGCATGTCCACCTGGGCGGCCATCAGCGACCTACTC
TCCTCCGCGCAGTGCACGCTGCACTACTTGAAGCAGCTTAAACAGCGAAA
GGAAGTACACTTTAAAATGCACGAGTGCGAGAAGGAATTCTCGTGTATCT
TAAGTTCAGTGTTGCAGTTGTACAACCAAGAGCGCAAGTTGCTGCACGCA
GTGAAACGGCAGATCATTGACGTGTTTGCAGGCAAGAACGGTTTGGCGCA
AAGCTGTGCTAAAAGAGGTGGTGATGAGAGGAGGTTCGAGAGTGCGGAGG
CCGTGGAGGTCACGACAGCTGAAGGGCTCGTCTTCCCCTCGGACGTCGGA
AGGGCAGGCGAAGCGGTCAGGGCGACGCAGGCCGTTAGGGCGACGCAGGC
CGTTAGGGCGACGCAGGCCGTTAGGGcgacgcaggccggtagggcgacgc
cggccgtttgggagacgcaggccgtttggaccaccgaagctgtgaggggg
acggaggccgtcgaggccgaggagatcgaggcggaggctatgaaggaggg
ggctatggaggcggGGTCTATGGAGGCGGGGTCGATGAAGGCGGAGGCTA
TACAGCCGCAGGGTGTGGAGGCGGAGGCTATACAGCCAGAGGCTATGGAG
GCTGAGGCTGTGCGTGGCGTCAAGGTCGAGGACACGGGTGCGGTACAAGG
CGTTGAGGCAAACGACAAGCTATGCATAGAGCCAGTACTGGCGCCCAAGG
ACAGAAGGAGCTTCAGTCCGCCAGGGCAGAAGAACATGGCAACGCAAACT
ATGTTAAAGAAGGCATTTTGCGTGACAGGCGACAGGGGCAGCGGAGGGCC
CGACGCGTCTCAGGCTGTGCGAGAGCGATCTGAAGGGGGTGCACACGGAG
ATGAGACGAGGCGCATGGAGAGGAAAACGGGATTGAAGAGAGGGGAGGCG
GATGTGGGAGATGGAGAGGCGCCACGGGCGGCGGAAAGCAGCGAGGACAG
CCAAGAGGCTCATGAGACGCGCTGGAAGCGCGAAAGAGCAGCAGGCGGCA
GCGCAGGTGGGGCGCAGGTCAGAAGCAGAAGGCGGCGGTGCACAGACAGC
GGGGGTGAAGGGGCGGCGCCGGCGACGAAACGACGGCGCATCAACTGGAC
GGCCGAAGAGAATCGCACTTTCATTGCGTTGGTGTGCAGATTCAAGCGGC
TGGGGGAGGCGGAGATGAGACGATGCGTGGCAAAACACTTTGCCGCGCGG
CGTACACATGAGCAGTGCGCGAATCATTTGCGCATCTTGCGCGCGAAGGG
CGTGCTGCCGCCGGGAGAAGACGGCGGCGGGGAGAAGGGCGGCCGTGAGG
TGCGGCGCTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2816302..2817762+

>Gchil1832.t1 ID=Gchil1832.t1|Name=Gchil1832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00004403_pilon:2816302..2817762+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAACCTGGATCTGTTGATTCAGGCTTCGGTGCTAGTGGAGTCCAA
AAAGCTGCACAGCATGGACAAGTTTGAGGCGCTGCACGGTGAGCTCAACG
CATCTGTGGAGGCACGCATGTCCACCTGGGCGGCCATCAGCGACCTACTC
TCCTCCGCGCAGTGCACGCTGCACTACTTGAAGCAGCTTAAACAGCGAAA
GGAAGTACACTTTAAAATGCACGAGTGCGAGAAGGAATTCTCGTGTATCT
TAAGTTCAGTGTTGCAGTTGTACAACCAAGAGCGCAAGTTGCTGCACGCA
GTGAAACGGCAGATCATTGACGTGTTTGCAGGCAAGAACGGTTTGGCGCA
AAGCTGTGCTAAAAGAGGTGGTGATGAGAGGAGGTTCGAGAGTGCGGAGG
CCGTGGAGGTCACGACAGCTGAAGGGCTCGTCTTCCCCTCGGACGTCGGA
AGGGCAGGCGAAGCGGTCAGGGCGACGCAGGCCGTTAGGGCGACGCAGGC
CGTTAGGGCGACGCAGGCCGTTAGGGcgacgcaggccggtagggcgacgc
cggccgtttgggagacgcaggccgtttggaccaccgaagctgtgaggggg
acggaggccgtcgaggccgaggagatcgaggcggaggctatgaaggaggg
ggctatggaggcggGGTCTATGGAGGCGGGGTCGATGAAGGCGGAGGCTA
TACAGCCGCAGGGTGTGGAGGCGGAGGCTATACAGCCAGAGGCTATGGAG
GCTGAGGCTGTGCGTGGCGTCAAGGTCGAGGACACGGGTGCGGTACAAGG
CGTTGAGGCAAACGACAAGCTATGCATAGAGCCAGTACTGGCGCCCAAGG
ACAGAAGGAGCTTCAGTCCGCCAGGGCAGAAGAACATGGCAACGCAAACT
ATGTTAAAGAAGGCATTTTGCGTGACAGGCGACAGGGGCAGCGGAGGGCC
CGACGCGTCTCAGGCTGTGCGAGAGCGATCTGAAGGGGGTGCACACGGAG
ATGAGACGAGGCGCATGGAGAGGAAAACGGGATTGAAGAGAGGGGAGGCG
GATGTGGGAGATGGAGAGGCGCCACGGGCGGCGGAAAGCAGCGAGGACAG
CCAAGAGGCTCATGAGACGCGCTGGAAGCGCGAAAGAGCAGCAGGCGGCA
GCGCAGGTGGGGCGCAGGTCAGAAGCAGAAGGCGGCGGTGCACAGACAGC
GGGGGTGAAGGGGCGGCGCCGGCGACGAAACGACGGCGCATCAACTGGAC
GGCCGAAGAGAATCGCACTTTCATTGCGTTGGTGTGCAGATTCAAGCGGC
TGGGGGAGGCGGAGATGAGACGATGCGTGGCAAAACACTTTGCCGCGCGG
CGTACACATGAGCAGTGCGCGAATCATTTGCGCATCTTGCGCGCGAAGGG
CGTGCTGCCGCCGGGAGAAGACGGCGGCGGGGAGAAGGGCGGCCGTGAGG
TGCGGCGCTGA
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