Gchil1831.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1831.t1
Unique NameGchil1831.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length525
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2813275..2815107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1147.D082_19030
PFAMsCBS,DHH,DHHA1,PolyA_pol,PolyA_pol_RNAbd
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00078
KEGG koko:K00970,ko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,ko03018,map03013,map03018
Evalue2.79e-84
EggNOG OGsCOG0517@1|root,COG0617@1|root,COG0618@1|root,COG0517@2|Bacteria,COG0617@2|Bacteria,COG0618@2|Bacteria,1FZVS@1117|Cyanobacteria,1H4H4@1142|Synechocystis
EC2.7.7.19,2.7.7.72
DescriptionPoly A polymerase head domain
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03016,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1831Gchil1831Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2813275..2815107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1831.t1Gchil1831.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2813275..2815107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1831.t1.start1Gchil1831.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2813275..2813277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1831.t1.CDS1Gchil1831.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2813275..2813345 +
Gchil1831.t1.CDS2Gchil1831.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2813604..2815107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1831.t1.exon1Gchil1831.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2813275..2813345 +
Gchil1831.t1.exon2Gchil1831.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2813604..2815107 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1831.t1.intron1Gchil1831.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2813346..2813603 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1831.t1.stop1Gchil1831.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2815105..2815107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1831.t1 ID=Gchil1831.t1|Name=Gchil1831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp
MRRLCVAFTSVPLLSARTSTLLAPAGDGNESADGSAWAHEGGAAAHKDLD
VVLTHSTADFDSLAAAVGLAKLRGPQTVVVTPGGESPAVRRFLALHRQLY
KIVNVHAVDPKRLRWVGIVDTVRSDRLGVAAEWPAHAQHVEVYDHHIGRQ
CDIRNDNLTVVVDAVGAVATIICEKLREAGVELTAAEATLLALAIHSDTA
SLTLEHTTARDVHALGWLMSQGAIQRSIAEFSHTMLTDEQQTALSTALAR
LERHGVNGVQIASLILNGSTFLKGMSAVATDVLQIANVDVLILAYLNSRG
RRSKRKHRAAPDVVERDDARGDIKQLSIIARAHARVDGIDFARLLQPLGG
GGHARAASASLKVTEQRARQIVQQLVADASKQIPRPRPVSHFMSTELVTV
LPTASLRQARALMALHGHEMLPVVNEDMALLGLISAQDVALAKRKRADDG
LSVPVAAWMHQNVVSVGPSTPFYQAAKMVAEDTAGLLPVVEQHRLVGVIT
RMDVLVARRLVPDKMNHDTHRRWT*
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spliced messenger RNA

>Gchil1831.t1 ID=Gchil1831.t1|Name=Gchil1831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1575bp|location=Sequence derived from alignment at tig00004403_pilon:2813275..2815107+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCGCCTCTGCGTCGCGTTCACCTCCGTGCCGCTACTGAGCGCGCG
CACCAGCACTCTTCTCGCCCCTGCGGGAGATGGAAATGAAAGCGCCGACG
GCAGCGCCTGGGCGCACGAAGGCGGCGCCGCAGCGCACAAGGATCTTGAC
GTGGTGCTGACGCACTCCACAGCCGACTTCGACTCGCTGGCGGCCGCGGT
GGGACTCGCCAAGTTGCGCGGCCCGCAGACGGTGGTTGTGACGCCGGGTG
GCGAGTCACCGGCAGTTCGTCGCTTTCTGGCGCTGCATCGGCAGCTGTAC
AAGATTGTCAACGTGCATGCGGTCGATCCGAAGCGCTTGCGGTGGGTGGG
CATTGTTGACACCGTACGCTCCGACCGACTGGGCGTGGCGGCTGAGTGGC
CCGCGCACGCGCAGCACGTTGAGGTGTACGATCACCACATCGGGCGCCAA
TGCGATATCCGCAATGATAACCTCACCGTTGTGGTGGACGCTGTGGGCGC
TGTCGCCACCATCATTTGCGAGAAACTGCGCGAAGCGGGCGTGGAGCTCA
CGGCGGCCGAGGCCACGTTGTTGGCGCTCGCCATTCACTCGGACACCGCC
TCTCTCACTTTAGAGCACACGACGGCGCGCGACGTGCACGCGCTGGGATG
GCTCATGTCGCAAGGCGCCATTCAGCGCTCCATCGCCGAGTTCTCACACA
CAATGCTCACGGACGAGCAGCAGACGGCGCTCAGCACCGCGCTGGCGCGT
CTGGAGCGGCACGGCGTCAACGGCGTACAGATTGCATCGCTCATTCTTAA
CGGCAGCACGTTCCTCAAGGGCATGAGCGCGGTAGCCACCGACGTGTTGC
AAATCGCTAACGTGGACGTGCTCATCCTGGCTTACCTCAACTCGCGCGGC
CGCCGCTCCAAGCGCAAGCATCGGGCCGCACCCGACGTTGTCGAGCGTGA
CGACGCTCGCGGAGACATCAAACAGCTGTCCATCATTGCGCGCGCACACG
CGCGCGTAGATGGAATCGACTTTGCGCGCTTGTTACAGCCGCTGGGCGGC
GGCGGTCACGCGCGCGCCGCTTCTGCGTCGCTAAAAGTCACTGAGCAGCG
CGCGCGGCAAATCGTGCAGCAACTTGTTGCTGACGCGTCCAAACAGATAC
CGCGGCCGCGGCCGGTGTCGCATTTCATGAGCACGGAACTGGTGACGGTG
TTGCCCACAGCGTCTTTACGACAAGCGCGCGCGCTCATGGCGCTGCACGG
GCATGAGATGCTGCCCGTTGTGAATGAGGACATGGCTCTGCTGGGCCTTA
TCTCCGCTCAGGACGTGGCGCTTGCGAAGAGGAAGCGCGCGGACGACGGG
CTCTCTGTGCCGGTTGCTGCGTGGATGCACCAGAATGTTGTGAGCGTGGG
GCCGAGCACGCCGTTCTACCAGGCGGCGAAGATGGTGGCCGAGGACACGG
CCGGATTGCTGCCCGTGGTGGAGCAGCACCGGCTGGTGGGCGTCATCACT
CGCATGGACGTGCTCGTGGCCAGACGCCTCGTGCCTGACAAGATGAATCA
TGATACGCATCGGCGATGGACGTGA
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protein sequence of Gchil1831.t1

>Gchil1831.t1 ID=Gchil1831.t1|Name=Gchil1831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=525bp
MRRLCVAFTSVPLLSARTSTLLAPAGDGNESADGSAWAHEGGAAAHKDLD
VVLTHSTADFDSLAAAVGLAKLRGPQTVVVTPGGESPAVRRFLALHRQLY
KIVNVHAVDPKRLRWVGIVDTVRSDRLGVAAEWPAHAQHVEVYDHHIGRQ
CDIRNDNLTVVVDAVGAVATIICEKLREAGVELTAAEATLLALAIHSDTA
SLTLEHTTARDVHALGWLMSQGAIQRSIAEFSHTMLTDEQQTALSTALAR
LERHGVNGVQIASLILNGSTFLKGMSAVATDVLQIANVDVLILAYLNSRG
RRSKRKHRAAPDVVERDDARGDIKQLSIIARAHARVDGIDFARLLQPLGG
GGHARAASASLKVTEQRARQIVQQLVADASKQIPRPRPVSHFMSTELVTV
LPTASLRQARALMALHGHEMLPVVNEDMALLGLISAQDVALAKRKRADDG
LSVPVAAWMHQNVVSVGPSTPFYQAAKMVAEDTAGLLPVVEQHRLVGVIT
RMDVLVARRLVPDKMNHDTHRRWT*
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mRNA from alignment at tig00004403_pilon:2813275..2815107+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1831.t1 ID=Gchil1831.t1|Name=Gchil1831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1833bp|location=Sequence derived from alignment at tig00004403_pilon:2813275..2815107+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGCGCCTCTGCGTCGCGTTCACCTCCGTGCCGCTACTGAGCGCGCG
CACCAGCACTCTTCTCGCCCCGTACGTGCTCGCAGCAACGCGAACAGCGC
GACAAACACCAAGACGGCGCTCTTCCCCGCGAGCTTGCTCGTCACATAAA
CCGtcgcaatcatcgcaaccatcgcaatcatcgcaaccatcgcaatcatc
gcaatcatcgcaatcatcgcaaccatcgcaatcatcgcaatcgtcgcaat
cgtcgcaatcgtcgcaatcGTCAGAAGCGTCACAATCGCACGCGCGCTCG
CTCAAGACGCACCACCCGACTCGCGCCAGTGCGGGAGATGGAAATGAAAG
CGCCGACGGCAGCGCCTGGGCGCACGAAGGCGGCGCCGCAGCGCACAAGG
ATCTTGACGTGGTGCTGACGCACTCCACAGCCGACTTCGACTCGCTGGCG
GCCGCGGTGGGACTCGCCAAGTTGCGCGGCCCGCAGACGGTGGTTGTGAC
GCCGGGTGGCGAGTCACCGGCAGTTCGTCGCTTTCTGGCGCTGCATCGGC
AGCTGTACAAGATTGTCAACGTGCATGCGGTCGATCCGAAGCGCTTGCGG
TGGGTGGGCATTGTTGACACCGTACGCTCCGACCGACTGGGCGTGGCGGC
TGAGTGGCCCGCGCACGCGCAGCACGTTGAGGTGTACGATCACCACATCG
GGCGCCAATGCGATATCCGCAATGATAACCTCACCGTTGTGGTGGACGCT
GTGGGCGCTGTCGCCACCATCATTTGCGAGAAACTGCGCGAAGCGGGCGT
GGAGCTCACGGCGGCCGAGGCCACGTTGTTGGCGCTCGCCATTCACTCGG
ACACCGCCTCTCTCACTTTAGAGCACACGACGGCGCGCGACGTGCACGCG
CTGGGATGGCTCATGTCGCAAGGCGCCATTCAGCGCTCCATCGCCGAGTT
CTCACACACAATGCTCACGGACGAGCAGCAGACGGCGCTCAGCACCGCGC
TGGCGCGTCTGGAGCGGCACGGCGTCAACGGCGTACAGATTGCATCGCTC
ATTCTTAACGGCAGCACGTTCCTCAAGGGCATGAGCGCGGTAGCCACCGA
CGTGTTGCAAATCGCTAACGTGGACGTGCTCATCCTGGCTTACCTCAACT
CGCGCGGCCGCCGCTCCAAGCGCAAGCATCGGGCCGCACCCGACGTTGTC
GAGCGTGACGACGCTCGCGGAGACATCAAACAGCTGTCCATCATTGCGCG
CGCACACGCGCGCGTAGATGGAATCGACTTTGCGCGCTTGTTACAGCCGC
TGGGCGGCGGCGGTCACGCGCGCGCCGCTTCTGCGTCGCTAAAAGTCACT
GAGCAGCGCGCGCGGCAAATCGTGCAGCAACTTGTTGCTGACGCGTCCAA
ACAGATACCGCGGCCGCGGCCGGTGTCGCATTTCATGAGCACGGAACTGG
TGACGGTGTTGCCCACAGCGTCTTTACGACAAGCGCGCGCGCTCATGGCG
CTGCACGGGCATGAGATGCTGCCCGTTGTGAATGAGGACATGGCTCTGCT
GGGCCTTATCTCCGCTCAGGACGTGGCGCTTGCGAAGAGGAAGCGCGCGG
ACGACGGGCTCTCTGTGCCGGTTGCTGCGTGGATGCACCAGAATGTTGTG
AGCGTGGGGCCGAGCACGCCGTTCTACCAGGCGGCGAAGATGGTGGCCGA
GGACACGGCCGGATTGCTGCCCGTGGTGGAGCAGCACCGGCTGGTGGGCG
TCATCACTCGCATGGACGTGCTCGTGGCCAGACGCCTCGTGCCTGACAAG
ATGAATCATGATACGCATCGGCGATGGACGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2813275..2815107+

>Gchil1831.t1 ID=Gchil1831.t1|Name=Gchil1831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1575bp|location=Sequence derived from alignment at tig00004403_pilon:2813275..2815107+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGCGCCTCTGCGTCGCGTTCACCTCCGTGCCGCTACTGAGCGCGCG
CACCAGCACTCTTCTCGCCCCTGCGGGAGATGGAAATGAAAGCGCCGACG
GCAGCGCCTGGGCGCACGAAGGCGGCGCCGCAGCGCACAAGGATCTTGAC
GTGGTGCTGACGCACTCCACAGCCGACTTCGACTCGCTGGCGGCCGCGGT
GGGACTCGCCAAGTTGCGCGGCCCGCAGACGGTGGTTGTGACGCCGGGTG
GCGAGTCACCGGCAGTTCGTCGCTTTCTGGCGCTGCATCGGCAGCTGTAC
AAGATTGTCAACGTGCATGCGGTCGATCCGAAGCGCTTGCGGTGGGTGGG
CATTGTTGACACCGTACGCTCCGACCGACTGGGCGTGGCGGCTGAGTGGC
CCGCGCACGCGCAGCACGTTGAGGTGTACGATCACCACATCGGGCGCCAA
TGCGATATCCGCAATGATAACCTCACCGTTGTGGTGGACGCTGTGGGCGC
TGTCGCCACCATCATTTGCGAGAAACTGCGCGAAGCGGGCGTGGAGCTCA
CGGCGGCCGAGGCCACGTTGTTGGCGCTCGCCATTCACTCGGACACCGCC
TCTCTCACTTTAGAGCACACGACGGCGCGCGACGTGCACGCGCTGGGATG
GCTCATGTCGCAAGGCGCCATTCAGCGCTCCATCGCCGAGTTCTCACACA
CAATGCTCACGGACGAGCAGCAGACGGCGCTCAGCACCGCGCTGGCGCGT
CTGGAGCGGCACGGCGTCAACGGCGTACAGATTGCATCGCTCATTCTTAA
CGGCAGCACGTTCCTCAAGGGCATGAGCGCGGTAGCCACCGACGTGTTGC
AAATCGCTAACGTGGACGTGCTCATCCTGGCTTACCTCAACTCGCGCGGC
CGCCGCTCCAAGCGCAAGCATCGGGCCGCACCCGACGTTGTCGAGCGTGA
CGACGCTCGCGGAGACATCAAACAGCTGTCCATCATTGCGCGCGCACACG
CGCGCGTAGATGGAATCGACTTTGCGCGCTTGTTACAGCCGCTGGGCGGC
GGCGGTCACGCGCGCGCCGCTTCTGCGTCGCTAAAAGTCACTGAGCAGCG
CGCGCGGCAAATCGTGCAGCAACTTGTTGCTGACGCGTCCAAACAGATAC
CGCGGCCGCGGCCGGTGTCGCATTTCATGAGCACGGAACTGGTGACGGTG
TTGCCCACAGCGTCTTTACGACAAGCGCGCGCGCTCATGGCGCTGCACGG
GCATGAGATGCTGCCCGTTGTGAATGAGGACATGGCTCTGCTGGGCCTTA
TCTCCGCTCAGGACGTGGCGCTTGCGAAGAGGAAGCGCGCGGACGACGGG
CTCTCTGTGCCGGTTGCTGCGTGGATGCACCAGAATGTTGTGAGCGTGGG
GCCGAGCACGCCGTTCTACCAGGCGGCGAAGATGGTGGCCGAGGACACGG
CCGGATTGCTGCCCGTGGTGGAGCAGCACCGGCTGGTGGGCGTCATCACT
CGCATGGACGTGCTCGTGGCCAGACGCCTCGTGCCTGACAAGATGAATCA
TGATACGCATCGGCGATGGACGTGA
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