Gchil1830.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1830.t1
Unique NameGchil1830.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2812219..2812938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4641.GSMUA_Achr9P16220_001
PFAMsIsy1
Max annot lvl35493|Streptophyta
KEGG koko:K12870
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Evalue2.14e-38
EggNOG OGsKOG3068@1|root,KOG3068@2759|Eukaryota,37I6H@33090|Viridiplantae,3GFG5@35493|Streptophyta,3KPYK@4447|Liliopsida
DescriptionIsy1-like splicing family
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1830Gchil1830Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2812219..2812938 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1830.t1.stop1Gchil1830.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2812219..2812221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1830.t1.CDS1Gchil1830.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2812219..2812938 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1830.t1.exon1Gchil1830.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2812219..2812938 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1830.t1.start1Gchil1830.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2812936..2812938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1830.t1Gchil1830.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2812219..2812938 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1830.t1 ID=Gchil1830.t1|Name=Gchil1830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp
MITFVLPFFGPSRNLTPKSHPFQESSACTLRGPRTSVLLCSADTTAVSNL
RQQIDTIAGSDRGIFGLEQHQRDTLDSFIKDLECNNPNPNPTSHDAKAAA
GSWRLLYTTLEILGRKRVRLAISSPRKPGLVKLGNFFQFIDPSNRQSKNV
VEFKLLTGASGTFTITAEYHVVSRVRVNVSTTATALEPPSFEALLGSNMP
LLTQIFNPDGYLDITYLDESLRVGRDSKGHIFVLERAQV*
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spliced messenger RNA

>Gchil1830.t1 ID=Gchil1830.t1|Name=Gchil1830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004403_pilon:2812219..2812938- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACGTTCGTCCTTCCTTTCTTTGGCCCATCGCGCAATTTGACCCC
AAAGTCCCACCCGTTTCAGGAAAGCTCAGCATGCACGCTTCGTGGTCCGC
GCACATCTGTGTTGCTCTGTTCAGCTGATACCACCGCCGTTTCCAATCTC
AGGCAGCAAATTGATACAATTGCTGGAAGCGACAGAGGCATATTTGGACT
TGAACAACACCAGCGAGACACGCTCGATTCCTTCATAAAAGACCTCGAAT
GCAACAATCCCAACCCGAATCCAACATCACACGACGCAAAAGCTGCGGCT
GGCTCGTGGCGCTTGCTGTACACCACGTTAGAGATCCTGGGAAGAAAGAG
AGTTCGGCTTGCAATTTCCTCACCTCGCAAGCCGGGACTGGTCAAGCTCG
GAAACTTCTTCCAGTTCATTGACCCTTCCAACCGCCAAAGCAAAAACGTC
GTGGAATTTAAGCTCTTGACCGGAGCGTCGGGAACGTTTACGATAACCGC
TGAATATCACGTTGTGAGCAGAGTGCGAGTGAATGTATCCACAACAGCAA
CTGCCCTGGAGCCACCGTCTTTTGAGGCCCTGCTTGGGTCAAACATGCCC
TTGCTCACTCAGATTTTCAACCCCGATGGATATCTGGATATCACCTACTT
GGACGAATCTCTCAGAGTTGGGAGAGATAGCAAAGGTCATATTTTCGTGT
TAGAGAGAGCACAAGTGTAA
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protein sequence of Gchil1830.t1

>Gchil1830.t1 ID=Gchil1830.t1|Name=Gchil1830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=240bp
MITFVLPFFGPSRNLTPKSHPFQESSACTLRGPRTSVLLCSADTTAVSNL
RQQIDTIAGSDRGIFGLEQHQRDTLDSFIKDLECNNPNPNPTSHDAKAAA
GSWRLLYTTLEILGRKRVRLAISSPRKPGLVKLGNFFQFIDPSNRQSKNV
VEFKLLTGASGTFTITAEYHVVSRVRVNVSTTATALEPPSFEALLGSNMP
LLTQIFNPDGYLDITYLDESLRVGRDSKGHIFVLERAQV*
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mRNA from alignment at tig00004403_pilon:2812219..2812938-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1830.t1 ID=Gchil1830.t1|Name=Gchil1830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004403_pilon:2812219..2812938- (Gracilaria chilensis NLEC103_M9 male)
ATGATCACGTTCGTCCTTCCTTTCTTTGGCCCATCGCGCAATTTGACCCC
AAAGTCCCACCCGTTTCAGGAAAGCTCAGCATGCACGCTTCGTGGTCCGC
GCACATCTGTGTTGCTCTGTTCAGCTGATACCACCGCCGTTTCCAATCTC
AGGCAGCAAATTGATACAATTGCTGGAAGCGACAGAGGCATATTTGGACT
TGAACAACACCAGCGAGACACGCTCGATTCCTTCATAAAAGACCTCGAAT
GCAACAATCCCAACCCGAATCCAACATCACACGACGCAAAAGCTGCGGCT
GGCTCGTGGCGCTTGCTGTACACCACGTTAGAGATCCTGGGAAGAAAGAG
AGTTCGGCTTGCAATTTCCTCACCTCGCAAGCCGGGACTGGTCAAGCTCG
GAAACTTCTTCCAGTTCATTGACCCTTCCAACCGCCAAAGCAAAAACGTC
GTGGAATTTAAGCTCTTGACCGGAGCGTCGGGAACGTTTACGATAACCGC
TGAATATCACGTTGTGAGCAGAGTGCGAGTGAATGTATCCACAACAGCAA
CTGCCCTGGAGCCACCGTCTTTTGAGGCCCTGCTTGGGTCAAACATGCCC
TTGCTCACTCAGATTTTCAACCCCGATGGATATCTGGATATCACCTACTT
GGACGAATCTCTCAGAGTTGGGAGAGATAGCAAAGGTCATATTTTCGTGT
TAGAGAGAGCACAAGTGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2812219..2812938-

>Gchil1830.t1 ID=Gchil1830.t1|Name=Gchil1830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00004403_pilon:2812219..2812938- (Gracilaria chilensis NLEC103_M9 male)
ATGATCACGTTCGTCCTTCCTTTCTTTGGCCCATCGCGCAATTTGACCCC
AAAGTCCCACCCGTTTCAGGAAAGCTCAGCATGCACGCTTCGTGGTCCGC
GCACATCTGTGTTGCTCTGTTCAGCTGATACCACCGCCGTTTCCAATCTC
AGGCAGCAAATTGATACAATTGCTGGAAGCGACAGAGGCATATTTGGACT
TGAACAACACCAGCGAGACACGCTCGATTCCTTCATAAAAGACCTCGAAT
GCAACAATCCCAACCCGAATCCAACATCACACGACGCAAAAGCTGCGGCT
GGCTCGTGGCGCTTGCTGTACACCACGTTAGAGATCCTGGGAAGAAAGAG
AGTTCGGCTTGCAATTTCCTCACCTCGCAAGCCGGGACTGGTCAAGCTCG
GAAACTTCTTCCAGTTCATTGACCCTTCCAACCGCCAAAGCAAAAACGTC
GTGGAATTTAAGCTCTTGACCGGAGCGTCGGGAACGTTTACGATAACCGC
TGAATATCACGTTGTGAGCAGAGTGCGAGTGAATGTATCCACAACAGCAA
CTGCCCTGGAGCCACCGTCTTTTGAGGCCCTGCTTGGGTCAAACATGCCC
TTGCTCACTCAGATTTTCAACCCCGATGGATATCTGGATATCACCTACTT
GGACGAATCTCTCAGAGTTGGGAGAGATAGCAAAGGTCATATTTTCGTGT
TAGAGAGAGCACAAGTGTAA
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