Gchil1823.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1823.t1
Unique NameGchil1823.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2712406..2713569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC075CT
Preferred nameMTP3
PFAMsCation_efflux,ZT_dimer
Max annot lvl2759|Eukaryota
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000325,GO:0003006,GO:0003674,GO:0005215,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006811,GO:0006812,GO:0006828,GO:0006873,GO:0006875,GO:0007275,GO:0008150,GO:0008324,GO:0009705,GO:0009791,GO:0009845,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010042,GO:0010154,GO:0010486,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015291,GO:0015297,GO:0015298,GO:0015299,GO:0015318,GO:0015491,GO:0015672,GO:0016020,GO:0019725,GO:0022414,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030026,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034220,GO:0035618,GO:0042221,GO:0042592,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046688,GO:0046873,GO:0046915,GO:0046916,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0048878,GO:0050801,GO:0050896,GO:0051139,GO:0051179,GO:0051234,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0061458,GO:0065007,GO:0065008,GO:0071421,GO:0090351,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098791,GO:0098805,GO:0099516,GO:0120025,GO:1902600
Evalue5.45e-78
EggNOG OGsCOG0053@1|root,KOG1485@2759|Eukaryota
Descriptioncation transmembrane transporter activity
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1823Gchil1823Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2712406..2713569 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1823.t1.stop1Gchil1823.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2712406..2712408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1823.t1.CDS1Gchil1823.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2712406..2713569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1823.t1.exon1Gchil1823.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2712406..2713569 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1823.t1.start1Gchil1823.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2713567..2713569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1823.t1Gchil1823.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2712406..2713569 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1823.t1 ID=Gchil1823.t1|Name=Gchil1823.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=388bp
MSRQHDPLPAAEAGESTALLRHTVAFTSNSWPAQSHSVAELWRHGYKSPE
ELDTISNHAVRDFYERQNDLLERFRQVSSYHIQPIDNGIDAHERAVRRAI
VASNVSNTVLMACQLYAFMSSRSLALLAVFLDAVLDMVSGLVILLTWYMK
RRRDKHRYPVGRSRLEPLGVIGMACLMTAATLITLERSISALARGKHSAP
LEGLTYTSATVLLSALCIKGTLYIYCSRIEDTSVKALAEDHFNDCVANSV
SFCTVLVAQHFLWWVDPLGGILVSCLIIHNWVLHTLGHVDQLLGKAADRE
VLNLITFVACNHDSHILLVDTVRAYHVGNGIYVEVDIALPAQMPLREAHD
VGESLQTRIETLHEVERCFVHLDFETSHSPDTEHKQI*
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spliced messenger RNA

>Gchil1823.t1 ID=Gchil1823.t1|Name=Gchil1823.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004403_pilon:2712406..2713569- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGGCAGCACGACCCACTTCCCGCCGCAGAGGCTGGTGAGTCTAC
CGCGCTGCTTCGACACACGGTTGCCTTCACGTCCAACTCATGGCCGGCCC
AGTCACACTCCGTGGCCGAATTATGGAGACATGGGTACAAATCACCAGAA
GAACTTGATACTATTTCAAATCACGCTGTACGTGACTTCTATGAAAGACA
GAACGATCTGTTGGAACGGTTTCGTCAGGTGTCTTCGTACCACATTCAAC
CAATCGACAATGGAATTGACGCTCATGAGAGAGCTGTTCGAAGGGCAATT
GTAGCTTCTAATGTTTCCAATACCGTGCTTATGGCTTGTCAGTTGTATGC
GTTCATGTCTTCGCGGTCGTTGGCGTTGCTTGCCGTCTTCCTCGATGCTG
TTCTGGATATGGTTTCTGGGTTGGTTATTCTGTTAACATGGTATATGAAA
AGAAGGCGTGACAAGCATCGATACCCGGTTGGTAGATCTCGACTGGAGCC
GCTCGGGGTCATTGGCATGGCGTGTCTTATGACTGCTGCTACACTCATTA
CGCTTGAACGTTCAATCTCCGCCCTGGCTCGAGGAAAACACTCTGCTCCT
TTGGAAGGTCTCACATATACCAGTGCTACTGTCTTGCTTTCCGCGCTGTG
CATCAAAGGCACGTTGTATATATACTGCTCGCGGATTGAAGATACATCTG
TCAAAGCTCTGGCAGAAGATCATTTCAATGACTGTGTAGCAAACTCCGTC
AGTTTCTGCACCGTTCTTGTTGCTCAGCATTTCTTGTGGTGGGTTGATCC
CTTGGGAGGAATACTCGTCTCTTGTCTCATCATTCATAACTGGGTTCTTC
ACACTCTGGGACACGTCGATCAGTTGTTGGGAAAGGCAGCTGATCGAGAA
GTTCTCAATCTCATAACATTTGTGGCTTGCAATCATGATTCTCACATTCT
TCTTGTCGACACTGTGCGTGCATATCATGTGGGTAATGGGATATACGTTG
AGGTTGATATCGCTCTACCTGCTCAAATGCCACTGAGAGAAGCGCATGAC
GTTGGCGAAAGTTTGCAAACTCGCATTGAAACGCTCCATGAAGTGGAGCG
CTGTTTCGTGCATCTTGATTTCGAGACTTCACATTCTCCGGATACTGAAC
ACAAACAGATATGA
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protein sequence of Gchil1823.t1

>Gchil1823.t1 ID=Gchil1823.t1|Name=Gchil1823.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=388bp
MSRQHDPLPAAEAGESTALLRHTVAFTSNSWPAQSHSVAELWRHGYKSPE
ELDTISNHAVRDFYERQNDLLERFRQVSSYHIQPIDNGIDAHERAVRRAI
VASNVSNTVLMACQLYAFMSSRSLALLAVFLDAVLDMVSGLVILLTWYMK
RRRDKHRYPVGRSRLEPLGVIGMACLMTAATLITLERSISALARGKHSAP
LEGLTYTSATVLLSALCIKGTLYIYCSRIEDTSVKALAEDHFNDCVANSV
SFCTVLVAQHFLWWVDPLGGILVSCLIIHNWVLHTLGHVDQLLGKAADRE
VLNLITFVACNHDSHILLVDTVRAYHVGNGIYVEVDIALPAQMPLREAHD
VGESLQTRIETLHEVERCFVHLDFETSHSPDTEHKQI*
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mRNA from alignment at tig00004403_pilon:2712406..2713569-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1823.t1 ID=Gchil1823.t1|Name=Gchil1823.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00004403_pilon:2712406..2713569- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCGGCAGCACGACCCACTTCCCGCCGCAGAGGCTGGTGAGTCTAC
CGCGCTGCTTCGACACACGGTTGCCTTCACGTCCAACTCATGGCCGGCCC
AGTCACACTCCGTGGCCGAATTATGGAGACATGGGTACAAATCACCAGAA
GAACTTGATACTATTTCAAATCACGCTGTACGTGACTTCTATGAAAGACA
GAACGATCTGTTGGAACGGTTTCGTCAGGTGTCTTCGTACCACATTCAAC
CAATCGACAATGGAATTGACGCTCATGAGAGAGCTGTTCGAAGGGCAATT
GTAGCTTCTAATGTTTCCAATACCGTGCTTATGGCTTGTCAGTTGTATGC
GTTCATGTCTTCGCGGTCGTTGGCGTTGCTTGCCGTCTTCCTCGATGCTG
TTCTGGATATGGTTTCTGGGTTGGTTATTCTGTTAACATGGTATATGAAA
AGAAGGCGTGACAAGCATCGATACCCGGTTGGTAGATCTCGACTGGAGCC
GCTCGGGGTCATTGGCATGGCGTGTCTTATGACTGCTGCTACACTCATTA
CGCTTGAACGTTCAATCTCCGCCCTGGCTCGAGGAAAACACTCTGCTCCT
TTGGAAGGTCTCACATATACCAGTGCTACTGTCTTGCTTTCCGCGCTGTG
CATCAAAGGCACGTTGTATATATACTGCTCGCGGATTGAAGATACATCTG
TCAAAGCTCTGGCAGAAGATCATTTCAATGACTGTGTAGCAAACTCCGTC
AGTTTCTGCACCGTTCTTGTTGCTCAGCATTTCTTGTGGTGGGTTGATCC
CTTGGGAGGAATACTCGTCTCTTGTCTCATCATTCATAACTGGGTTCTTC
ACACTCTGGGACACGTCGATCAGTTGTTGGGAAAGGCAGCTGATCGAGAA
GTTCTCAATCTCATAACATTTGTGGCTTGCAATCATGATTCTCACATTCT
TCTTGTCGACACTGTGCGTGCATATCATGTGGGTAATGGGATATACGTTG
AGGTTGATATCGCTCTACCTGCTCAAATGCCACTGAGAGAAGCGCATGAC
GTTGGCGAAAGTTTGCAAACTCGCATTGAAACGCTCCATGAAGTGGAGCG
CTGTTTCGTGCATCTTGATTTCGAGACTTCACATTCTCCGGATACTGAAC
ACAAACAGATATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2712406..2713569-

>Gchil1823.t1 ID=Gchil1823.t1|Name=Gchil1823.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00004403_pilon:2712406..2713569- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCGGCAGCACGACCCACTTCCCGCCGCAGAGGCTGGTGAGTCTAC
CGCGCTGCTTCGACACACGGTTGCCTTCACGTCCAACTCATGGCCGGCCC
AGTCACACTCCGTGGCCGAATTATGGAGACATGGGTACAAATCACCAGAA
GAACTTGATACTATTTCAAATCACGCTGTACGTGACTTCTATGAAAGACA
GAACGATCTGTTGGAACGGTTTCGTCAGGTGTCTTCGTACCACATTCAAC
CAATCGACAATGGAATTGACGCTCATGAGAGAGCTGTTCGAAGGGCAATT
GTAGCTTCTAATGTTTCCAATACCGTGCTTATGGCTTGTCAGTTGTATGC
GTTCATGTCTTCGCGGTCGTTGGCGTTGCTTGCCGTCTTCCTCGATGCTG
TTCTGGATATGGTTTCTGGGTTGGTTATTCTGTTAACATGGTATATGAAA
AGAAGGCGTGACAAGCATCGATACCCGGTTGGTAGATCTCGACTGGAGCC
GCTCGGGGTCATTGGCATGGCGTGTCTTATGACTGCTGCTACACTCATTA
CGCTTGAACGTTCAATCTCCGCCCTGGCTCGAGGAAAACACTCTGCTCCT
TTGGAAGGTCTCACATATACCAGTGCTACTGTCTTGCTTTCCGCGCTGTG
CATCAAAGGCACGTTGTATATATACTGCTCGCGGATTGAAGATACATCTG
TCAAAGCTCTGGCAGAAGATCATTTCAATGACTGTGTAGCAAACTCCGTC
AGTTTCTGCACCGTTCTTGTTGCTCAGCATTTCTTGTGGTGGGTTGATCC
CTTGGGAGGAATACTCGTCTCTTGTCTCATCATTCATAACTGGGTTCTTC
ACACTCTGGGACACGTCGATCAGTTGTTGGGAAAGGCAGCTGATCGAGAA
GTTCTCAATCTCATAACATTTGTGGCTTGCAATCATGATTCTCACATTCT
TCTTGTCGACACTGTGCGTGCATATCATGTGGGTAATGGGATATACGTTG
AGGTTGATATCGCTCTACCTGCTCAAATGCCACTGAGAGAAGCGCATGAC
GTTGGCGAAAGTTTGCAAACTCGCATTGAAACGCTCCATGAAGTGGAGCG
CTGTTTCGTGCATCTTGATTTCGAGACTTCACATTCTCCGGATACTGAAC
ACAAACAGATATGA
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