Gchil1804.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1804.t1
Unique NameGchil1804.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length422
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2572116..2573381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926550.CLDAP_27380
PFAMsMoCF_biosynth,MoeA_C,MoeA_N
Max annot lvl200795|Chloroflexi
KEGG rclassRC00002,RC03462
KEGG koko:K03750,ko:K15376
KEGG ReactionR09726,R09735
KEGG Pathwayko00790,ko01100,ko04727,map00790,map01100,map04727
Evalue1.44e-97
EggNOG OGsCOG0303@1|root,COG0303@2|Bacteria,2G6AK@200795|Chloroflexi
EC2.10.1.1,2.7.7.75
DescriptionMoeA domain protein domain I and II
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1804Gchil1804Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2572116..2573381 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1804.t1.stop1Gchil1804.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2572116..2572118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1804.t1.CDS1Gchil1804.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2572116..2573381 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1804.t1.exon1Gchil1804.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2572116..2573381 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1804.t1.start1Gchil1804.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2573379..2573381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1804.t1Gchil1804.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2572116..2573381 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1804.t1 ID=Gchil1804.t1|Name=Gchil1804.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=422bp
MVISPERSQYPLIPMQEALEKISETLSALPLVSVPTTQALHRLLAVNVHA
SWPQPPFRASVKDGYAVSLPLAESLKVTASSHAGSKTPACITLGSAAYVT
TGAPVPEGADAVVMVENSICEGDVLTFTKNVDLSPGQDIREIGCDVAEGE
LVLSAGTYLGAAEIGILASCGVTSIQVYDRPVIGVFSSGDEILDVNNMPE
KMPFGSIIDSNRPMLLASVQESLPFCTSLDLGFIPDIESVVTDALLDAIK
KCHIVITTGGVSMGRRDFIKPVLEKIATVHFGRVLMKPGKPLTYATMSEH
RCFLALPGNPVSSFVCFHLAVAVAARKLAGWSGESVMGTQVDVSIAHDVR
LDRQRPEYHRVTLQYIPEQGYVGTSTGKQASSRLLSTRSADALLMLPKGE
GSLSAGAKVRALLLAHYVYSC*
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spliced messenger RNA

>Gchil1804.t1 ID=Gchil1804.t1|Name=Gchil1804.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00004403_pilon:2572116..2573381- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATTTCTCCCGAACGCTCGCAATATCCTCTCATTCCAATGCAAGA
GGCGTTGGAAAAAATTTCCGAAACACTCTCAGCTCTGCCTCTTGTTTCTG
TACCAACAACCCAAGCACTTCATCGCTTGCTCGCAGTCAACGTCCACGCC
TCTTGGCCCCAACCTCCGTTTCGAGCCTCTGTCAAAGATGGCTACGCGGT
ATCTTTACCACTCGCAGAATCCCTGAAAGTGACGGCCTCGTCCCACGCTG
GATCGAAGACCCCTGCCTGTATCACTCTGGGTTCCGCAGCCTATGTAACC
ACCGGCGCGCCTGTTCCAGAGGGTGCAGATGCTGTCGTCATGGTGGAAAA
CAGTATATGTGAAGGAGATGTGCTCACATTTACAAAAAACGTAGATCTAT
CGCCGGGGCAAGATATACGCGAGATCGGATGTGATGTCGCAGAGGGCGAA
CTAGTGCTCTCAGCCGGCACCTATCTTGGAGCGGCTGAGATAGGTATTCT
TGCCAGCTGTGGCGTCACATCCATTCAGGTCTACGATCGCCCAGTCATTG
GCGTGTTTTCAAGCGGCGATGAGATTCTGGATGTGAACAACATGCCAGAG
AAAATGCCTTTTGGTTCTATCATTGACTCTAATCGACCAATGCTTCTCGC
TTCCGTCCAAGAATCTCTTCCGTTTTGCACGTCGCTTGACCTCGGTTTTA
TACCTGACATTGAATCAGTTGTCACCGACGCTCTGCTGGATGCCATAAAG
AAGTGTCATATCGTAATTACTACAGGTGGGGTGTCCATGGGAAGGCGAGA
CTTTATTAAACCGGTGCTGGAGAAGATTGCCACTGTACATTTTGGACGCG
TATTGATGAAGCCTGGGAAACCACTAACGTACGCCACCATGTCTGAACAT
AGATGTTTTCTAGCATTGCCGGGTAATCCCGTAAGTTCCTTTGTTTGCTT
CCATCTGGCAGTTGCCGTCGCAGCTAGGAAGCTTGCGGGCTGGAGTGGTG
AGAGTGTGATGGGGACACAGGTCGATGTATCTATTGCTCACGATGTAAGA
CTTGACAGGCAAAGGCCGGAGTATCATCGAGTCACTCTACAGTATATCCC
TGAACAAGGATATGTTGGCACATCAACAGGGAAGCAAGCTAGTTCAAGAT
TGCTATCAACAAGATCTGCAGATGCGCTTTTAATGTTGCCGAAGGGCGAG
GGCTCACTTTCGGCTGGGGCAAAGGTCAGGGCGTTGCTGTTGGCGCACTA
CGTGTACTCATGTTAG
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protein sequence of Gchil1804.t1

>Gchil1804.t1 ID=Gchil1804.t1|Name=Gchil1804.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=422bp
MVISPERSQYPLIPMQEALEKISETLSALPLVSVPTTQALHRLLAVNVHA
SWPQPPFRASVKDGYAVSLPLAESLKVTASSHAGSKTPACITLGSAAYVT
TGAPVPEGADAVVMVENSICEGDVLTFTKNVDLSPGQDIREIGCDVAEGE
LVLSAGTYLGAAEIGILASCGVTSIQVYDRPVIGVFSSGDEILDVNNMPE
KMPFGSIIDSNRPMLLASVQESLPFCTSLDLGFIPDIESVVTDALLDAIK
KCHIVITTGGVSMGRRDFIKPVLEKIATVHFGRVLMKPGKPLTYATMSEH
RCFLALPGNPVSSFVCFHLAVAVAARKLAGWSGESVMGTQVDVSIAHDVR
LDRQRPEYHRVTLQYIPEQGYVGTSTGKQASSRLLSTRSADALLMLPKGE
GSLSAGAKVRALLLAHYVYSC*
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mRNA from alignment at tig00004403_pilon:2572116..2573381-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1804.t1 ID=Gchil1804.t1|Name=Gchil1804.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00004403_pilon:2572116..2573381- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATTTCTCCCGAACGCTCGCAATATCCTCTCATTCCAATGCAAGA
GGCGTTGGAAAAAATTTCCGAAACACTCTCAGCTCTGCCTCTTGTTTCTG
TACCAACAACCCAAGCACTTCATCGCTTGCTCGCAGTCAACGTCCACGCC
TCTTGGCCCCAACCTCCGTTTCGAGCCTCTGTCAAAGATGGCTACGCGGT
ATCTTTACCACTCGCAGAATCCCTGAAAGTGACGGCCTCGTCCCACGCTG
GATCGAAGACCCCTGCCTGTATCACTCTGGGTTCCGCAGCCTATGTAACC
ACCGGCGCGCCTGTTCCAGAGGGTGCAGATGCTGTCGTCATGGTGGAAAA
CAGTATATGTGAAGGAGATGTGCTCACATTTACAAAAAACGTAGATCTAT
CGCCGGGGCAAGATATACGCGAGATCGGATGTGATGTCGCAGAGGGCGAA
CTAGTGCTCTCAGCCGGCACCTATCTTGGAGCGGCTGAGATAGGTATTCT
TGCCAGCTGTGGCGTCACATCCATTCAGGTCTACGATCGCCCAGTCATTG
GCGTGTTTTCAAGCGGCGATGAGATTCTGGATGTGAACAACATGCCAGAG
AAAATGCCTTTTGGTTCTATCATTGACTCTAATCGACCAATGCTTCTCGC
TTCCGTCCAAGAATCTCTTCCGTTTTGCACGTCGCTTGACCTCGGTTTTA
TACCTGACATTGAATCAGTTGTCACCGACGCTCTGCTGGATGCCATAAAG
AAGTGTCATATCGTAATTACTACAGGTGGGGTGTCCATGGGAAGGCGAGA
CTTTATTAAACCGGTGCTGGAGAAGATTGCCACTGTACATTTTGGACGCG
TATTGATGAAGCCTGGGAAACCACTAACGTACGCCACCATGTCTGAACAT
AGATGTTTTCTAGCATTGCCGGGTAATCCCGTAAGTTCCTTTGTTTGCTT
CCATCTGGCAGTTGCCGTCGCAGCTAGGAAGCTTGCGGGCTGGAGTGGTG
AGAGTGTGATGGGGACACAGGTCGATGTATCTATTGCTCACGATGTAAGA
CTTGACAGGCAAAGGCCGGAGTATCATCGAGTCACTCTACAGTATATCCC
TGAACAAGGATATGTTGGCACATCAACAGGGAAGCAAGCTAGTTCAAGAT
TGCTATCAACAAGATCTGCAGATGCGCTTTTAATGTTGCCGAAGGGCGAG
GGCTCACTTTCGGCTGGGGCAAAGGTCAGGGCGTTGCTGTTGGCGCACTA
CGTGTACTCATGTTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:2572116..2573381-

>Gchil1804.t1 ID=Gchil1804.t1|Name=Gchil1804.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00004403_pilon:2572116..2573381- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATTTCTCCCGAACGCTCGCAATATCCTCTCATTCCAATGCAAGA
GGCGTTGGAAAAAATTTCCGAAACACTCTCAGCTCTGCCTCTTGTTTCTG
TACCAACAACCCAAGCACTTCATCGCTTGCTCGCAGTCAACGTCCACGCC
TCTTGGCCCCAACCTCCGTTTCGAGCCTCTGTCAAAGATGGCTACGCGGT
ATCTTTACCACTCGCAGAATCCCTGAAAGTGACGGCCTCGTCCCACGCTG
GATCGAAGACCCCTGCCTGTATCACTCTGGGTTCCGCAGCCTATGTAACC
ACCGGCGCGCCTGTTCCAGAGGGTGCAGATGCTGTCGTCATGGTGGAAAA
CAGTATATGTGAAGGAGATGTGCTCACATTTACAAAAAACGTAGATCTAT
CGCCGGGGCAAGATATACGCGAGATCGGATGTGATGTCGCAGAGGGCGAA
CTAGTGCTCTCAGCCGGCACCTATCTTGGAGCGGCTGAGATAGGTATTCT
TGCCAGCTGTGGCGTCACATCCATTCAGGTCTACGATCGCCCAGTCATTG
GCGTGTTTTCAAGCGGCGATGAGATTCTGGATGTGAACAACATGCCAGAG
AAAATGCCTTTTGGTTCTATCATTGACTCTAATCGACCAATGCTTCTCGC
TTCCGTCCAAGAATCTCTTCCGTTTTGCACGTCGCTTGACCTCGGTTTTA
TACCTGACATTGAATCAGTTGTCACCGACGCTCTGCTGGATGCCATAAAG
AAGTGTCATATCGTAATTACTACAGGTGGGGTGTCCATGGGAAGGCGAGA
CTTTATTAAACCGGTGCTGGAGAAGATTGCCACTGTACATTTTGGACGCG
TATTGATGAAGCCTGGGAAACCACTAACGTACGCCACCATGTCTGAACAT
AGATGTTTTCTAGCATTGCCGGGTAATCCCGTAAGTTCCTTTGTTTGCTT
CCATCTGGCAGTTGCCGTCGCAGCTAGGAAGCTTGCGGGCTGGAGTGGTG
AGAGTGTGATGGGGACACAGGTCGATGTATCTATTGCTCACGATGTAAGA
CTTGACAGGCAAAGGCCGGAGTATCATCGAGTCACTCTACAGTATATCCC
TGAACAAGGATATGTTGGCACATCAACAGGGAAGCAAGCTAGTTCAAGAT
TGCTATCAACAAGATCTGCAGATGCGCTTTTAATGTTGCCGAAGGGCGAG
GGCTCACTTTCGGCTGGGGCAAAGGTCAGGGCGTTGCTGTTGGCGCACTA
CGTGTACTCATGTTAG
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