Gchil1802.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1802.t1
Unique NameGchil1802.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2565410..2566443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME147CT
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15280
KEGG TC2.A.7
Evalue3.63e-29
EggNOG OGsCOG0697@1|root,KOG1443@2759|Eukaryota
DescriptionUDP-glucose transmembrane transport
COG categoryEG
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1802Gchil1802Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2565410..2566443 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1802.t1Gchil1802.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2565410..2566443 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1802.t1.stop1Gchil1802.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2565410..2565412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1802.t1.CDS1Gchil1802.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2565410..2566314 -
Gchil1802.t1.CDS2Gchil1802.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2566413..2566443 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1802.t1.exon1Gchil1802.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2565410..2566314 -
Gchil1802.t1.exon2Gchil1802.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2566413..2566443 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1802.t1.intron1Gchil1802.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2566315..2566412 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1802.t1.start1Gchil1802.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2566441..2566443 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1802.t1 ID=Gchil1802.t1|Name=Gchil1802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp
MYACRCSLRCATNNIVASLVSSLFAVRHQPLPNEHPSARIASIIGATTAA
EIGLANIALNLLSVSFSTVLKATAPFFVLAWGIVLGVHKLRFGVAASLFA
MAAGLILAVCAEHKNTAPALSHFLRLGLLAQLVSALFSGFRWVLTQVFIK
RDPLLNQTIPNLFNYPPASKGWSAIETVRYVSPFTLLWILPFVLLVEGAS
LFNWIHTASFPENLKLLVVLSSIGSSVFVLLWSEYELVRITSSLTVSVTF
VFKEMLLIFAAALIFSDRLSWLTCAGFAIVQAGVVCYVSQKNRHCGNTKK
ATQLTLGHESP*
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spliced messenger RNA

>Gchil1802.t1 ID=Gchil1802.t1|Name=Gchil1802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00004403_pilon:2565410..2566443- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGCATGCCGCTGCTCGTTGCGCTGTGCCACCAACAACATCGTTGC
ATCCCTCGTATCTTCTCTGTTCGCCGTTCGCCACCAACCACTTCCCAACG
AGCACCCCTCCGCTCGCATTGCCTCCATAATCGGCGCAACAACAGCCGCA
GAGATCGGCCTTGCAAATATTGCCCTCAATCTTTTGTCCGTGTCTTTCTC
CACAGTGCTCAAAGCAACAGCTCCGTTTTTTGTTCTCGCTTGGGGCATTG
TGCTCGGCGTTCACAAGCTCAGATTTGGCGTTGCCGCTTCACTTTTCGCC
ATGGCTGCGGGCCTCATTCTGGCAGTCTGTGCCGAACATAAAAATACCGC
CCCAGCTCTTTCACATTTTCTCCGACTTGGCCTTCTTGCCCAGCTTGTTT
CAGCCTTGTTTTCTGGGTTTCGTTGGGTTCTCACCCAAGTCTTCATTAAA
CGTGATCCTCTTCTCAATCAAACCATCCCCAATCTTTTCAACTATCCTCC
GGCCTCCAAAGGCTGGTCTGCTATTGAAACCGTGCGATACGTCTCCCCCT
TCACTCTCTTGTGGATTTTGCCCTTCGTCCTGCTTGTAGAAGGAGCGAGT
CTCTTCAACTGGATTCACACTGCCTCGTTTCCAGAAAACCTCAAGCTGCT
TGTCGTGCTTTCCTCCATTGGCTCCTCGGTGTTTGTGCTGTTGTGGTCCG
AATATGAACTTGTCAGAATCACGTCCTCCCTCACCGTTTCCGTCACTTTT
GTTTTCAAAGAAATGCTCCTCATTTTTGCGGCTGCCCTAATCTTTAGTGA
CCGTCTTTCCTGGCTCACGTGTGCTGGTTTTGCCATCGTCCAAGCAGGCG
TTGTATGTTATGTTTCGCAAAAGAACCGTCACTGTGGAAACACAAAAAAG
GCGACACAGCTCACACTTGGGCATGAGTCACCATGA
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protein sequence of Gchil1802.t1

>Gchil1802.t1 ID=Gchil1802.t1|Name=Gchil1802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MYACRCSLRCATNNIVASLVSSLFAVRHQPLPNEHPSARIASIIGATTAA
EIGLANIALNLLSVSFSTVLKATAPFFVLAWGIVLGVHKLRFGVAASLFA
MAAGLILAVCAEHKNTAPALSHFLRLGLLAQLVSALFSGFRWVLTQVFIK
RDPLLNQTIPNLFNYPPASKGWSAIETVRYVSPFTLLWILPFVLLVEGAS
LFNWIHTASFPENLKLLVVLSSIGSSVFVLLWSEYELVRITSSLTVSVTF
VFKEMLLIFAAALIFSDRLSWLTCAGFAIVQAGVVCYVSQKNRHCGNTKK
ATQLTLGHESP*
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mRNA from alignment at tig00004403_pilon:2565410..2566443-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1802.t1 ID=Gchil1802.t1|Name=Gchil1802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1034bp|location=Sequence derived from alignment at tig00004403_pilon:2565410..2566443- (Gracilaria chilensis NLEC103_M9 male)
ATGTACGCATGCCGCTGCTCGTTGCGCTGTGGTACGTATCTTCTTCCATC
GCCGTGCTTGCCACCAAAGCACTCTTCTCTGGAATCGCTCATCAAATCCG
CCCCTTTCCGTTCGCCCTCACTCTCACAGCCACCAACAACATCGTTGCAT
CCCTCGTATCTTCTCTGTTCGCCGTTCGCCACCAACCACTTCCCAACGAG
CACCCCTCCGCTCGCATTGCCTCCATAATCGGCGCAACAACAGCCGCAGA
GATCGGCCTTGCAAATATTGCCCTCAATCTTTTGTCCGTGTCTTTCTCCA
CAGTGCTCAAAGCAACAGCTCCGTTTTTTGTTCTCGCTTGGGGCATTGTG
CTCGGCGTTCACAAGCTCAGATTTGGCGTTGCCGCTTCACTTTTCGCCAT
GGCTGCGGGCCTCATTCTGGCAGTCTGTGCCGAACATAAAAATACCGCCC
CAGCTCTTTCACATTTTCTCCGACTTGGCCTTCTTGCCCAGCTTGTTTCA
GCCTTGTTTTCTGGGTTTCGTTGGGTTCTCACCCAAGTCTTCATTAAACG
TGATCCTCTTCTCAATCAAACCATCCCCAATCTTTTCAACTATCCTCCGG
CCTCCAAAGGCTGGTCTGCTATTGAAACCGTGCGATACGTCTCCCCCTTC
ACTCTCTTGTGGATTTTGCCCTTCGTCCTGCTTGTAGAAGGAGCGAGTCT
CTTCAACTGGATTCACACTGCCTCGTTTCCAGAAAACCTCAAGCTGCTTG
TCGTGCTTTCCTCCATTGGCTCCTCGGTGTTTGTGCTGTTGTGGTCCGAA
TATGAACTTGTCAGAATCACGTCCTCCCTCACCGTTTCCGTCACTTTTGT
TTTCAAAGAAATGCTCCTCATTTTTGCGGCTGCCCTAATCTTTAGTGACC
GTCTTTCCTGGCTCACGTGTGCTGGTTTTGCCATCGTCCAAGCAGGCGTT
GTATGTTATGTTTCGCAAAAGAACCGTCACTGTGGAAACACAAAAAAGGC
GACACAGCTCACACTTGGGCATGAGTCACCATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2565410..2566443-

>Gchil1802.t1 ID=Gchil1802.t1|Name=Gchil1802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00004403_pilon:2565410..2566443- (Gracilaria chilensis NLEC103_M9 male)
ATGTACGCATGCCGCTGCTCGTTGCGCTGTGCCACCAACAACATCGTTGC
ATCCCTCGTATCTTCTCTGTTCGCCGTTCGCCACCAACCACTTCCCAACG
AGCACCCCTCCGCTCGCATTGCCTCCATAATCGGCGCAACAACAGCCGCA
GAGATCGGCCTTGCAAATATTGCCCTCAATCTTTTGTCCGTGTCTTTCTC
CACAGTGCTCAAAGCAACAGCTCCGTTTTTTGTTCTCGCTTGGGGCATTG
TGCTCGGCGTTCACAAGCTCAGATTTGGCGTTGCCGCTTCACTTTTCGCC
ATGGCTGCGGGCCTCATTCTGGCAGTCTGTGCCGAACATAAAAATACCGC
CCCAGCTCTTTCACATTTTCTCCGACTTGGCCTTCTTGCCCAGCTTGTTT
CAGCCTTGTTTTCTGGGTTTCGTTGGGTTCTCACCCAAGTCTTCATTAAA
CGTGATCCTCTTCTCAATCAAACCATCCCCAATCTTTTCAACTATCCTCC
GGCCTCCAAAGGCTGGTCTGCTATTGAAACCGTGCGATACGTCTCCCCCT
TCACTCTCTTGTGGATTTTGCCCTTCGTCCTGCTTGTAGAAGGAGCGAGT
CTCTTCAACTGGATTCACACTGCCTCGTTTCCAGAAAACCTCAAGCTGCT
TGTCGTGCTTTCCTCCATTGGCTCCTCGGTGTTTGTGCTGTTGTGGTCCG
AATATGAACTTGTCAGAATCACGTCCTCCCTCACCGTTTCCGTCACTTTT
GTTTTCAAAGAAATGCTCCTCATTTTTGCGGCTGCCCTAATCTTTAGTGA
CCGTCTTTCCTGGCTCACGTGTGCTGGTTTTGCCATCGTCCAAGCAGGCG
TTGTATGTTATGTTTCGCAAAAGAACCGTCACTGTGGAAACACAAAAAAG
GCGACACAGCTCACACTTGGGCATGAGTCACCATGA
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