Gchil1801.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1801.t1
Unique NameGchil1801.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2563207..2564363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118166.JH976537_gene1514
Preferred namepip
PFAMsAbhydrolase_1
Max annot lvl1117|Cyanobacteria
KEGG koko:K01259
KEGG ReactionR00135
KEGG Pathwayko00330,map00330
Evalue1.65e-107
EggNOG OGsCOG0596@1|root,COG0596@2|Bacteria,1G21Y@1117|Cyanobacteria,1H751@1150|Oscillatoriales
EC3.4.11.5
DescriptionBelongs to the peptidase S33 family
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1801Gchil1801Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2563207..2564363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1801.t1Gchil1801.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2563207..2564363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1801.t1.stop1Gchil1801.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2563207..2563209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1801.t1.CDS1Gchil1801.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2563207..2564027 -
Gchil1801.t1.CDS2Gchil1801.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2564132..2564363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1801.t1.exon1Gchil1801.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2563207..2564027 -
Gchil1801.t1.exon2Gchil1801.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2564132..2564363 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1801.t1.intron1Gchil1801.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2564028..2564131 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1801.t1.start1Gchil1801.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2564361..2564363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1801.t1 ID=Gchil1801.t1|Name=Gchil1801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MAGTYSNRSNNNEIPLIANRTIYPPIEPYHKDYLQVSKTHKIYYEVSGNR
NGVPICFVHGGPGGGTVPAHRGFFDPRVYKIVLFDQRGCGKSQPFACLED
NTTWNLVDDMERVREAAGIDCWILFGGSWGSTLSIAYAQEHPHRVLGMIL
RGIFLSRKQELEWLYGPNGAAMLYPEAYDDFLTGLPKDMRDAEHIIDTFY
SILSQEDNNEERRIAANAWSNWERSLSSFQRQDTLDDFDNDSSDDENLAF
ARLEAHYFVHSSFLTEDDYLLKESQMQKIRYIKTCIVQGRWDVVCPRKSA
YDLARMFDPRCVEVVLVDNAGHSTFEPGIEEALLEATDSFGKEFGPGGIR
*
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spliced messenger RNA

>Gchil1801.t1 ID=Gchil1801.t1|Name=Gchil1801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00004403_pilon:2563207..2564363- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGTACTTACAGCAATCGCAGTAACAACAACGAGATACCGTTGAT
AGCAAATCGCACCATTTATCCACCGATTGAACCCTATCACAAAGACTATC
TGCAAGTATCCAAAACTCATAAAATATATTACGAGGTATCAGGAAATCGG
AACGGTGTTCCAATATGCTTTGTACACGGCGGACCGGGTGGCGGTACAGT
TCCTGCGCACCGCGGTTTTTTTGATCCAAGAGTTTATAAGATCGTCCTAT
TTGATCAAAGAGGATGTGGTAAATCACAGCCCTTCGCCTGCCTTGAGGAT
AATACGACTTGGAATCTTGTGGATGACATGGAACGCGTGCGAGAGGCCGC
TGGAATTGATTGTTGGATATTATTCGGCGGCAGTTGGGGGTCAACATTGT
CGATTGCGTACGCGCAAGAGCATCCTCATCGTGTTTTAGGGATGATTCTT
CGGGGTATATTTCTGTCACGCAAACAAGAATTAGAATGGCTGTATGGGCC
AAACGGCGCAGCTATGTTGTATCCAGAGGCTTATGATGACTTCCTAACTG
GTCTCCCAAAGGATATGAGAGACGCTGAACATATTATCGACACATTCTAC
AGCATATTGAGTCAAGAAGACAATAATGAGGAACGTCGTATTGCTGCAAA
TGCATGGAGCAATTGGGAACGAAGTCTTTCTAGTTTCCAGCGCCAGGATA
CTCTAGATGACTTTGACAATGATAGCAGCGACGATGAAAATCTTGCTTTT
GCCCGTCTTGAAGCACACTACTTCGTCCATAGCAGCTTTTTGACAGAAGA
CGATTATTTGCTGAAAGAGTCCCAGATGCAGAAGATCAGATACATCAAGA
CATGTATCGTGCAAGGACGATGGGATGTTGTTTGTCCCCGAAAAAGTGCG
TACGACCTTGCGCGCATGTTTGACCCCAGATGCGTTGAAGTTGTTCTCGT
GGATAACGCTGGCCACTCTACATTTGAACCCGGCATCGAGGAGGCTTTAC
TCGAAGCCACGGACTCTTTCGGAAAGGAATTTGGCCCCGGTGGAATAAGG
TGA
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protein sequence of Gchil1801.t1

>Gchil1801.t1 ID=Gchil1801.t1|Name=Gchil1801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MAGTYSNRSNNNEIPLIANRTIYPPIEPYHKDYLQVSKTHKIYYEVSGNR
NGVPICFVHGGPGGGTVPAHRGFFDPRVYKIVLFDQRGCGKSQPFACLED
NTTWNLVDDMERVREAAGIDCWILFGGSWGSTLSIAYAQEHPHRVLGMIL
RGIFLSRKQELEWLYGPNGAAMLYPEAYDDFLTGLPKDMRDAEHIIDTFY
SILSQEDNNEERRIAANAWSNWERSLSSFQRQDTLDDFDNDSSDDENLAF
ARLEAHYFVHSSFLTEDDYLLKESQMQKIRYIKTCIVQGRWDVVCPRKSA
YDLARMFDPRCVEVVLVDNAGHSTFEPGIEEALLEATDSFGKEFGPGGIR
*
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mRNA from alignment at tig00004403_pilon:2563207..2564363-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1801.t1 ID=Gchil1801.t1|Name=Gchil1801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1157bp|location=Sequence derived from alignment at tig00004403_pilon:2563207..2564363- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGGTACTTACAGCAATCGCAGTAACAACAACGAGATACCGTTGAT
AGCAAATCGCACCATTTATCCACCGATTGAACCCTATCACAAAGACTATC
TGCAAGTATCCAAAACTCATAAAATATATTACGAGGTATCAGGAAATCGG
AACGGTGTTCCAATATGCTTTGTACACGGCGGACCGGGTGGCGGTACAGT
TCCTGCGCACCGCGGTTTTTTTGATCCAAGAGGTAAGCACTCCATCATCT
TTCCCCTCCCACAGAGTGTCTGATAACATGGGGCCCCGATGAAACCCTAT
GAATCTGATTTTGATCCCCTTCGTGATGAATTGTAGTTTATAAGATCGTC
CTATTTGATCAAAGAGGATGTGGTAAATCACAGCCCTTCGCCTGCCTTGA
GGATAATACGACTTGGAATCTTGTGGATGACATGGAACGCGTGCGAGAGG
CCGCTGGAATTGATTGTTGGATATTATTCGGCGGCAGTTGGGGGTCAACA
TTGTCGATTGCGTACGCGCAAGAGCATCCTCATCGTGTTTTAGGGATGAT
TCTTCGGGGTATATTTCTGTCACGCAAACAAGAATTAGAATGGCTGTATG
GGCCAAACGGCGCAGCTATGTTGTATCCAGAGGCTTATGATGACTTCCTA
ACTGGTCTCCCAAAGGATATGAGAGACGCTGAACATATTATCGACACATT
CTACAGCATATTGAGTCAAGAAGACAATAATGAGGAACGTCGTATTGCTG
CAAATGCATGGAGCAATTGGGAACGAAGTCTTTCTAGTTTCCAGCGCCAG
GATACTCTAGATGACTTTGACAATGATAGCAGCGACGATGAAAATCTTGC
TTTTGCCCGTCTTGAAGCACACTACTTCGTCCATAGCAGCTTTTTGACAG
AAGACGATTATTTGCTGAAAGAGTCCCAGATGCAGAAGATCAGATACATC
AAGACATGTATCGTGCAAGGACGATGGGATGTTGTTTGTCCCCGAAAAAG
TGCGTACGACCTTGCGCGCATGTTTGACCCCAGATGCGTTGAAGTTGTTC
TCGTGGATAACGCTGGCCACTCTACATTTGAACCCGGCATCGAGGAGGCT
TTACTCGAAGCCACGGACTCTTTCGGAAAGGAATTTGGCCCCGGTGGAAT
AAGGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2563207..2564363-

>Gchil1801.t1 ID=Gchil1801.t1|Name=Gchil1801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00004403_pilon:2563207..2564363- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGGTACTTACAGCAATCGCAGTAACAACAACGAGATACCGTTGAT
AGCAAATCGCACCATTTATCCACCGATTGAACCCTATCACAAAGACTATC
TGCAAGTATCCAAAACTCATAAAATATATTACGAGGTATCAGGAAATCGG
AACGGTGTTCCAATATGCTTTGTACACGGCGGACCGGGTGGCGGTACAGT
TCCTGCGCACCGCGGTTTTTTTGATCCAAGAGTTTATAAGATCGTCCTAT
TTGATCAAAGAGGATGTGGTAAATCACAGCCCTTCGCCTGCCTTGAGGAT
AATACGACTTGGAATCTTGTGGATGACATGGAACGCGTGCGAGAGGCCGC
TGGAATTGATTGTTGGATATTATTCGGCGGCAGTTGGGGGTCAACATTGT
CGATTGCGTACGCGCAAGAGCATCCTCATCGTGTTTTAGGGATGATTCTT
CGGGGTATATTTCTGTCACGCAAACAAGAATTAGAATGGCTGTATGGGCC
AAACGGCGCAGCTATGTTGTATCCAGAGGCTTATGATGACTTCCTAACTG
GTCTCCCAAAGGATATGAGAGACGCTGAACATATTATCGACACATTCTAC
AGCATATTGAGTCAAGAAGACAATAATGAGGAACGTCGTATTGCTGCAAA
TGCATGGAGCAATTGGGAACGAAGTCTTTCTAGTTTCCAGCGCCAGGATA
CTCTAGATGACTTTGACAATGATAGCAGCGACGATGAAAATCTTGCTTTT
GCCCGTCTTGAAGCACACTACTTCGTCCATAGCAGCTTTTTGACAGAAGA
CGATTATTTGCTGAAAGAGTCCCAGATGCAGAAGATCAGATACATCAAGA
CATGTATCGTGCAAGGACGATGGGATGTTGTTTGTCCCCGAAAAAGTGCG
TACGACCTTGCGCGCATGTTTGACCCCAGATGCGTTGAAGTTGTTCTCGT
GGATAACGCTGGCCACTCTACATTTGAACCCGGCATCGAGGAGGCTTTAC
TCGAAGCCACGGACTCTTTCGGAAAGGAATTTGGCCCCGGTGGAATAAGG
TGA
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