Gchil1796.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1796.t1
Unique NameGchil1796.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length139
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2547571..2548080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S169_150V6.1
Max annot lvl35493|Streptophyta
Evalue7.22e-11
EggNOG OGs2B2D7@1|root,2S0CI@2759|Eukaryota,37UEH@33090|Viridiplantae,3GI13@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1796Gchil1796Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2547571..2548080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1796.t1Gchil1796.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2547571..2548080 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1796.t1.start1Gchil1796.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2547571..2547573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1796.t1.CDS1Gchil1796.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2547571..2547831 +
Gchil1796.t1.CDS2Gchil1796.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2547925..2548080 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1796.t1.exon1Gchil1796.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2547571..2547831 +
Gchil1796.t1.exon2Gchil1796.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2547925..2548080 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1796.t1.intron1Gchil1796.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2547832..2547924 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1796.t1.stop1Gchil1796.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2548078..2548080 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1796.t1 ID=Gchil1796.t1|Name=Gchil1796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=139bp
METENGSSGNHMPKTSRKTLRSTFGAWLKNTMSKRKNLKANVLRNYGIAA
FISYGFFDALTYSFSFMISLQTYIAAGKVLTWKTLPQVLALMWGINNFSR
PFRIAGALALAPMVDRRVVKPFQSFLTRLRERSSRSEE*
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spliced messenger RNA

>Gchil1796.t1 ID=Gchil1796.t1|Name=Gchil1796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=417bp|location=Sequence derived from alignment at tig00004403_pilon:2547571..2548080+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACCGAGAACGGTTCCTCTGGAAATCACATGCCCAAAACTTCAAG
AAAGACACTAAGATCGACCTTTGGTGCATGGCTTAAGAACACCATGTCGA
AACGAAAGAATCTTAAGGCCAATGTATTGCGCAACTACGGAATTGCTGCA
TTTATTTCCTATGGCTTTTTTGATGCGCTTACGTATTCATTTAGTTTTAT
GATTAGCTTGCAGACTTATATTGCTGCAGGCAAGGTGTTGACTTGGAAAA
CATTACCACAGGTTCTTGCACTCATGTGGGGCATCAACAACTTTAGTCGC
CCGTTTCGAATAGCTGGTGCCCTTGCCCTCGCACCTATGGTTGACCGTCG
GGTTGTGAAACCTTTCCAGAGTTTCTTAACTCGTCTCCGTGAAAGAAGTT
CTCGTTCCGAGGAATAG
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protein sequence of Gchil1796.t1

>Gchil1796.t1 ID=Gchil1796.t1|Name=Gchil1796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=139bp
METENGSSGNHMPKTSRKTLRSTFGAWLKNTMSKRKNLKANVLRNYGIAA
FISYGFFDALTYSFSFMISLQTYIAAGKVLTWKTLPQVLALMWGINNFSR
PFRIAGALALAPMVDRRVVKPFQSFLTRLRERSSRSEE*
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mRNA from alignment at tig00004403_pilon:2547571..2548080+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1796.t1 ID=Gchil1796.t1|Name=Gchil1796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00004403_pilon:2547571..2548080+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACCGAGAACGGTTCCTCTGGAAATCACATGCCCAAAACTTCAAG
AAAGACACTAAGATCGACCTTTGGTGCATGGCTTAAGAACACCATGTCGA
AACGAAAGAATCTTAAGGCCAATGTATTGCGCAACTACGGAATTGCTGCA
TTTATTTCCTATGGCTTTTTTGATGCGCTTACGTATTCATTTAGTTTTAT
GATTAGCTTGCAGACTTATATTGCTGCAGGCAAGGTGTTGACTTGGAAAA
CATTACCACAGGTACGATTTGAAGTTCAAACCAACGCGAGAATCTCCTAG
TCGCCAAGTACTGCGTCCAAGCAACAGTTTCTCACCTATTGTCGTTTCCT
CCAGGTTCTTGCACTCATGTGGGGCATCAACAACTTTAGTCGCCCGTTTC
GAATAGCTGGTGCCCTTGCCCTCGCACCTATGGTTGACCGTCGGGTTGTG
AAACCTTTCCAGAGTTTCTTAACTCGTCTCCGTGAAAGAAGTTCTCGTTC
CGAGGAATAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:2547571..2548080+

>Gchil1796.t1 ID=Gchil1796.t1|Name=Gchil1796.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=417bp|location=Sequence derived from alignment at tig00004403_pilon:2547571..2548080+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGACCGAGAACGGTTCCTCTGGAAATCACATGCCCAAAACTTCAAG
AAAGACACTAAGATCGACCTTTGGTGCATGGCTTAAGAACACCATGTCGA
AACGAAAGAATCTTAAGGCCAATGTATTGCGCAACTACGGAATTGCTGCA
TTTATTTCCTATGGCTTTTTTGATGCGCTTACGTATTCATTTAGTTTTAT
GATTAGCTTGCAGACTTATATTGCTGCAGGCAAGGTGTTGACTTGGAAAA
CATTACCACAGGTTCTTGCACTCATGTGGGGCATCAACAACTTTAGTCGC
CCGTTTCGAATAGCTGGTGCCCTTGCCCTCGCACCTATGGTTGACCGTCG
GGTTGTGAAACCTTTCCAGAGTTTCTTAACTCGTCTCCGTGAAAGAAGTT
CTCGTTCCGAGGAATAG
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