Gchil1794.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1794.t1
Unique NameGchil1794.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length689
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2487865..2490354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1794Gchil1794Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2487865..2490354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1794.t1Gchil1794.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2487865..2490354 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1794.t1.stop1Gchil1794.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2487865..2487867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1794.t1.CDS1Gchil1794.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2487865..2488004 -
Gchil1794.t1.CDS2Gchil1794.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2488077..2488087 -
Gchil1794.t1.CDS3Gchil1794.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2488174..2488192 -
Gchil1794.t1.CDS4Gchil1794.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2488458..2490354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1794.t1.exon1Gchil1794.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2487865..2488004 -
Gchil1794.t1.exon2Gchil1794.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2488077..2488087 -
Gchil1794.t1.exon3Gchil1794.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2488174..2488192 -
Gchil1794.t1.exon4Gchil1794.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2488458..2490354 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1794.t1.intron1Gchil1794.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2488005..2488076 -
Gchil1794.t1.intron2Gchil1794.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2488088..2488173 -
Gchil1794.t1.intron3Gchil1794.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2488193..2488457 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1794.t1.start1Gchil1794.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2490352..2490354 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1794.t1 ID=Gchil1794.t1|Name=Gchil1794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=689bp
MTRLALLVAALAAVLAAVPAVPAMPAAPPAVPPAVPPAALRALRLAAAMR
RPVIHAVAPAVPQAAQAAVGAVLRQGLNGAPCALDEECEADRVCVVVTDA
NVVACADAVSAAVSCSCLAPQPFCADDDDCSPGELCRDGLCRFDAAAAES
NAAAAAAAAVDDDASAAADAPSARQAGLNYDTCRASEDCSGGRECKLIDD
SDDSVECFGANGCFCINDQPFCGSTDDCDPGEVCSANFECLSETASQGSL
PTIAEPPATEPPATEPPATEPPATEPPATEPPTTEPPTTPAEQPEEDAEQ
DAEQDAEQDAEQDAEQDAEQDAEQDAEQDAEQDAEQDAEQPPTVPVGAGT
TEDAAEQTDTSAEPGSALNFEPCSTSSDCTEQRFCVLADAERFVQCLGRE
GCVCLTRRPGCESAADCSAGEQCASLSSLGEQEEEEQGAEEEEQGAEGEE
QGAEEEQTDGESDSEESSGAEEADANTSARQEEGEGEEGEAEATSWCVSE
TIDVASIQLPSSLIPEQVEDDRPAICIGAHLLQHMHAHQLLYKKHMYARV
LCDQRNSCATPGHIVQYRGKAMMMKKYCSMASCDRRIMLVNSPKYRRALR
IDSLTDGLQFTAFAARYETGAEETILTSAVRMVSPKVQSFTAPVYAKGLR
PCAPPHSTRVLNAKIRYTQIVFPPHHPPSIPLHHVSLR*
back to top

spliced messenger RNA

>Gchil1794.t1 ID=Gchil1794.t1|Name=Gchil1794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2067bp|location=Sequence derived from alignment at tig00004403_pilon:2487865..2490354- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCCTCGCGCTGCTCGTCGCCGCGCTGGCCGCCGTGCTAGCCGC
CGTGCCCGCCGTGCCCGCCATGCCCGCCGCTCCGCCCGCCGTGCCGCCCG
CCGTGCCGCCCGCCGCGCTGCGCGCGCTGCGTCTGGCGGCTGCGATGCGC
CGCCCGGTCATCCACGCCGTCGCGCCTGCAGTCCCTCAAGCCGCTCAAGC
CGCTGTAGGCGCCGTGCTACGCCAGGGGCTTAACGGTGCCCCATGCGCGT
TGGACGAAGAGTGTGAGGCCGATCGCGTGTGTGTGGTCGTCACTGATGCT
AACGTCGTTGCCTGTGCGGACGCTGTGTCTGCCGCTGTGTCGTGCTCGTG
TCTCGCCCCACAGCCGTTTTGCGCTGACGACGACGACTGCTCGCCCGGCG
AGCTGTGTCGCGACGGCCTGTGTCGCTTCGACGCCGCCGCCGCCGAATCC
AACGCTGCTGCTGCTGCTGCTGCTGCTGTTGATGATGATGCTTCTGCTGC
CGCCGACGCCCCGAGCGCACGCCAGGCGGGCCTCAATTACGACACCTGCC
GCGCCAGCGAGGACTGTAGCGGTGGGCGCGAGTGCAAGCTCATCGATGAC
AGCGATGACTCTGTCGAGTGCTTTGGCGCTAATGGCTGCTTTTGTATTAA
TGACCAGCCGTTTTGTGGCTCCACCGACGACTGTGACCCGGGAGAGGTTT
GTAGCGCAAACTTCGAATGCCTGTCTGAGACTGCCTCGCAAGGCAGCTTG
CCCACCATTGCCGAGCCGCCGGCCACTGAGCCGCCGGCCACTGAGCCGCC
GGCCACTGAGCCGCCGGCCACTGAGCCGCCGGCTACTGAGCCGCCGACCA
CTGAGCCACCCACTACGCCGGCCGAACAGCCCGAGGAGGACGCTGAGCAA
GACGCTGAGCAAGACGCTGAGCAGGACGCCGAGCAGGACGCCGAGCAGGA
CGCCGAGCAGGACGCCGAGCAGGACGCCGAGCAGGACGCCGAGCAGGACG
CCGAGCAGGACGCCGAGCAGCCGCCCACCGTGCCAGTCGGTGCCGGAACC
ACCGAGGACGCTGCCGAGCAGACCGACACCAGCGCCGAACCCGGCTCCGC
GCTCAACTTTGAGCCGTGCTCCACCAGCTCCGACTGCACGGAGCAACGCT
TTTGCGTGCTTGCTGACGCCGAGCGCTTTGTGCAGTGCTTGGGCAGGGAA
GGTTGCGTTTGCTTGACCAGGCGCCCGGGCTGTGAGTCTGCCGCCGACTG
TTCGGCTGGCGAGCAGTGCGCTTCGTTGAGCTCCCTCGGCGAGCAGGAAG
AAGAGGAGCAGGGCGCGGAGGAAGAGGAACAGGGCGCGGAGGGAGAGGAG
CAGGGCGCGGAGGAAGAGCAGACCGACGGTGAGAGCGACTCTGAGGAAAG
TTCTGGTGCAGAGGAGGCCGACGCTAATACTTCTGCACGTCAAGAAGAGG
GCGAAGGCGAAGAAGGCGAGGCGGAAGCCACCAGCTGGTGTGTTTCGGAG
ACCATTGATGTGGCATCTATCCAGCTACCGTCCTCGCTCATCCCAGAGCA
AGTGGAGGATGATCGCCCGGCCATCTGCATCGGCGCGCACTTGCTGCAAC
ACATGCACGCGCACCAACTTTTGTACAAGAAGCACATGTACGCACGCGTG
CTGTGTGACCAACGCAACAGTTGCGCCACGCCAGGTCACATCGTACAGTA
CAGAGGAAAGGCGATGATGATGAAGAAGTACTGCTCAATGGCGTCGTGTG
ACAGACGTATTATGTTGGTGAATAGTCCCAAGTATCGACGGGCGCTGCGT
ATTGACTCGCTCACGGACGGATTGCAGTTTACGGCGTTTGCTGCGCGCTA
CGAGACTGGTGCGGAGGAGACGATTCTCACAAGTGCCGTGCGCATGGTAT
CTCCAAAGGTTCAAAGCTTTACCGCTCCTGTGTATGCAAAAGGGCTGCGC
CCATGCGCACCCCCACACTCGACTCGAGTGCTCAACGCCAAGATCAGATA
CACCCAGATTGTGTTTCCACCTCATCATCCCCCGTCCATACCTCTTCATC
ACGTTTCACTCCGCTGA
back to top

protein sequence of Gchil1794.t1

>Gchil1794.t1 ID=Gchil1794.t1|Name=Gchil1794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=689bp
MTRLALLVAALAAVLAAVPAVPAMPAAPPAVPPAVPPAALRALRLAAAMR
RPVIHAVAPAVPQAAQAAVGAVLRQGLNGAPCALDEECEADRVCVVVTDA
NVVACADAVSAAVSCSCLAPQPFCADDDDCSPGELCRDGLCRFDAAAAES
NAAAAAAAAVDDDASAAADAPSARQAGLNYDTCRASEDCSGGRECKLIDD
SDDSVECFGANGCFCINDQPFCGSTDDCDPGEVCSANFECLSETASQGSL
PTIAEPPATEPPATEPPATEPPATEPPATEPPTTEPPTTPAEQPEEDAEQ
DAEQDAEQDAEQDAEQDAEQDAEQDAEQDAEQDAEQDAEQPPTVPVGAGT
TEDAAEQTDTSAEPGSALNFEPCSTSSDCTEQRFCVLADAERFVQCLGRE
GCVCLTRRPGCESAADCSAGEQCASLSSLGEQEEEEQGAEEEEQGAEGEE
QGAEEEQTDGESDSEESSGAEEADANTSARQEEGEGEEGEAEATSWCVSE
TIDVASIQLPSSLIPEQVEDDRPAICIGAHLLQHMHAHQLLYKKHMYARV
LCDQRNSCATPGHIVQYRGKAMMMKKYCSMASCDRRIMLVNSPKYRRALR
IDSLTDGLQFTAFAARYETGAEETILTSAVRMVSPKVQSFTAPVYAKGLR
PCAPPHSTRVLNAKIRYTQIVFPPHHPPSIPLHHVSLR*
back to top

mRNA from alignment at tig00004403_pilon:2487865..2490354-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1794.t1 ID=Gchil1794.t1|Name=Gchil1794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00004403_pilon:2487865..2490354- (Gracilaria chilensis NLEC103_M9 male)
ATGACACGCCTCGCGCTGCTCGTCGCCGCGCTGGCCGCCGTGCTAGCCGC
CGTGCCCGCCGTGCCCGCCATGCCCGCCGCTCCGCCCGCCGTGCCGCCCG
CCGTGCCGCCCGCCGCGCTGCGCGCGCTGCGTCTGGCGGCTGCGATGCGC
CGCCCGGTCATCCACGCCGTCGCGCCTGCAGTCCCTCAAGCCGCTCAAGC
CGCTGTAGGCGCCGTGCTACGCCAGGGGCTTAACGGTGCCCCATGCGCGT
TGGACGAAGAGTGTGAGGCCGATCGCGTGTGTGTGGTCGTCACTGATGCT
AACGTCGTTGCCTGTGCGGACGCTGTGTCTGCCGCTGTGTCGTGCTCGTG
TCTCGCCCCACAGCCGTTTTGCGCTGACGACGACGACTGCTCGCCCGGCG
AGCTGTGTCGCGACGGCCTGTGTCGCTTCGACGCCGCCGCCGCCGAATCC
AACGCTGCTGCTGCTGCTGCTGCTGCTGTTGATGATGATGCTTCTGCTGC
CGCCGACGCCCCGAGCGCACGCCAGGCGGGCCTCAATTACGACACCTGCC
GCGCCAGCGAGGACTGTAGCGGTGGGCGCGAGTGCAAGCTCATCGATGAC
AGCGATGACTCTGTCGAGTGCTTTGGCGCTAATGGCTGCTTTTGTATTAA
TGACCAGCCGTTTTGTGGCTCCACCGACGACTGTGACCCGGGAGAGGTTT
GTAGCGCAAACTTCGAATGCCTGTCTGAGACTGCCTCGCAAGGCAGCTTG
CCCACCATTGCCGAGCCGCCGGCCACTGAGCCGCCGGCCACTGAGCCGCC
GGCCACTGAGCCGCCGGCCACTGAGCCGCCGGCTACTGAGCCGCCGACCA
CTGAGCCACCCACTACGCCGGCCGAACAGCCCGAGGAGGACGCTGAGCAA
GACGCTGAGCAAGACGCTGAGCAGGACGCCGAGCAGGACGCCGAGCAGGA
CGCCGAGCAGGACGCCGAGCAGGACGCCGAGCAGGACGCCGAGCAGGACG
CCGAGCAGGACGCCGAGCAGCCGCCCACCGTGCCAGTCGGTGCCGGAACC
ACCGAGGACGCTGCCGAGCAGACCGACACCAGCGCCGAACCCGGCTCCGC
GCTCAACTTTGAGCCGTGCTCCACCAGCTCCGACTGCACGGAGCAACGCT
TTTGCGTGCTTGCTGACGCCGAGCGCTTTGTGCAGTGCTTGGGCAGGGAA
GGTTGCGTTTGCTTGACCAGGCGCCCGGGCTGTGAGTCTGCCGCCGACTG
TTCGGCTGGCGAGCAGTGCGCTTCGTTGAGCTCCCTCGGCGAGCAGGAAG
AAGAGGAGCAGGGCGCGGAGGAAGAGGAACAGGGCGCGGAGGGAGAGGAG
CAGGGCGCGGAGGAAGAGCAGACCGACGGTGAGAGCGACTCTGAGGAAAG
TTCTGGTGCAGAGGAGGCCGACGCTAATACTTCTGCACGTCAAGAAGAGG
GCGAAGGCGAAGAAGGCGAGGCGGAAGCCACCAGCTGGTGTGTTTCGGAG
ACCATTGATGTGGCATCTATCCAGCTACCGTCCTCGCTCATCCCAGAGCA
AGTGGAGGATGATCGCCCGGCCATCTGCATCGGCGCGCACTTGCTGCAAC
ACATGCACGCGCACCAACTTTTGTACAAGAAGCACATGTACGCACGCGTG
CTGTGTGACCAACGCAACAGTTGCGCCACGCCAGGTCACATCGTACAGTA
CAGAGGAAAGGCGATGATGATGAAGAAGTACTGCTCAATGGCGTCGTGTG
ACAGACGTATTATGTTGGTGAATAGTCCCAAGTATCGACGGGCGCTGCGT
ATTGACTCGCTCACGGACGGATTGCAGTTTACGGCGTTTGCTGCGCGCTA
CGAGACTGGTGCGGAGGAGACGATTCTCACAAGTGCCGTGCGCATGGGTC
TTTGAGGGAGCGCGGTTGTGTTTTTTTGGTTTTTCTTCTCCCTATTTTTT
AGCGCATAGTTTTGTTTTATTTGTTTTTATGTTTTTTATTTTTGCGTTGG
TAGTGTGAGTGAGCAGGGGGCGGGGGTGGGAGGGCCTTGTTTAGATTTGG
GAGCTTTTGCGCCTGCGGCGCGTGTTTGCTCTTTGTTCAGCTTGCATGAC
TTGTCGACTGCGGCATAGTAAACCCACGGGCATCGTTATGATGATTACTA
GCTAGCTACTAGTATCTCCAAAGGTTCAAAGGTGCGTATGACGAACCGAG
AACGTAGCAATTGCTAGCAATTGTGCTAACCCACAGCGCAAACGCACAAG
TTACAACTCGTCTCCAGCTTTACCGCTCGTATGTACTGTATACAAAATGT
ACCTTCGTACCTACAGTAGCGATCACTAACCCCTTCCCCCTTCGAATCAG
CTGTGTATGCAAAAGGGCTGCGCCCATGCGCACCCCCACACTCGACTCGA
GTGCTCAACGCCAAGATCAGATACACCCAGATTGTGTTTCCACCTCATCA
TCCCCCGTCCATACCTCTTCATCACGTTTCACTCCGCTGA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:2487865..2490354-

>Gchil1794.t1 ID=Gchil1794.t1|Name=Gchil1794.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2067bp|location=Sequence derived from alignment at tig00004403_pilon:2487865..2490354- (Gracilaria chilensis NLEC103_M9 male)
ATGACACGCCTCGCGCTGCTCGTCGCCGCGCTGGCCGCCGTGCTAGCCGC
CGTGCCCGCCGTGCCCGCCATGCCCGCCGCTCCGCCCGCCGTGCCGCCCG
CCGTGCCGCCCGCCGCGCTGCGCGCGCTGCGTCTGGCGGCTGCGATGCGC
CGCCCGGTCATCCACGCCGTCGCGCCTGCAGTCCCTCAAGCCGCTCAAGC
CGCTGTAGGCGCCGTGCTACGCCAGGGGCTTAACGGTGCCCCATGCGCGT
TGGACGAAGAGTGTGAGGCCGATCGCGTGTGTGTGGTCGTCACTGATGCT
AACGTCGTTGCCTGTGCGGACGCTGTGTCTGCCGCTGTGTCGTGCTCGTG
TCTCGCCCCACAGCCGTTTTGCGCTGACGACGACGACTGCTCGCCCGGCG
AGCTGTGTCGCGACGGCCTGTGTCGCTTCGACGCCGCCGCCGCCGAATCC
AACGCTGCTGCTGCTGCTGCTGCTGCTGTTGATGATGATGCTTCTGCTGC
CGCCGACGCCCCGAGCGCACGCCAGGCGGGCCTCAATTACGACACCTGCC
GCGCCAGCGAGGACTGTAGCGGTGGGCGCGAGTGCAAGCTCATCGATGAC
AGCGATGACTCTGTCGAGTGCTTTGGCGCTAATGGCTGCTTTTGTATTAA
TGACCAGCCGTTTTGTGGCTCCACCGACGACTGTGACCCGGGAGAGGTTT
GTAGCGCAAACTTCGAATGCCTGTCTGAGACTGCCTCGCAAGGCAGCTTG
CCCACCATTGCCGAGCCGCCGGCCACTGAGCCGCCGGCCACTGAGCCGCC
GGCCACTGAGCCGCCGGCCACTGAGCCGCCGGCTACTGAGCCGCCGACCA
CTGAGCCACCCACTACGCCGGCCGAACAGCCCGAGGAGGACGCTGAGCAA
GACGCTGAGCAAGACGCTGAGCAGGACGCCGAGCAGGACGCCGAGCAGGA
CGCCGAGCAGGACGCCGAGCAGGACGCCGAGCAGGACGCCGAGCAGGACG
CCGAGCAGGACGCCGAGCAGCCGCCCACCGTGCCAGTCGGTGCCGGAACC
ACCGAGGACGCTGCCGAGCAGACCGACACCAGCGCCGAACCCGGCTCCGC
GCTCAACTTTGAGCCGTGCTCCACCAGCTCCGACTGCACGGAGCAACGCT
TTTGCGTGCTTGCTGACGCCGAGCGCTTTGTGCAGTGCTTGGGCAGGGAA
GGTTGCGTTTGCTTGACCAGGCGCCCGGGCTGTGAGTCTGCCGCCGACTG
TTCGGCTGGCGAGCAGTGCGCTTCGTTGAGCTCCCTCGGCGAGCAGGAAG
AAGAGGAGCAGGGCGCGGAGGAAGAGGAACAGGGCGCGGAGGGAGAGGAG
CAGGGCGCGGAGGAAGAGCAGACCGACGGTGAGAGCGACTCTGAGGAAAG
TTCTGGTGCAGAGGAGGCCGACGCTAATACTTCTGCACGTCAAGAAGAGG
GCGAAGGCGAAGAAGGCGAGGCGGAAGCCACCAGCTGGTGTGTTTCGGAG
ACCATTGATGTGGCATCTATCCAGCTACCGTCCTCGCTCATCCCAGAGCA
AGTGGAGGATGATCGCCCGGCCATCTGCATCGGCGCGCACTTGCTGCAAC
ACATGCACGCGCACCAACTTTTGTACAAGAAGCACATGTACGCACGCGTG
CTGTGTGACCAACGCAACAGTTGCGCCACGCCAGGTCACATCGTACAGTA
CAGAGGAAAGGCGATGATGATGAAGAAGTACTGCTCAATGGCGTCGTGTG
ACAGACGTATTATGTTGGTGAATAGTCCCAAGTATCGACGGGCGCTGCGT
ATTGACTCGCTCACGGACGGATTGCAGTTTACGGCGTTTGCTGCGCGCTA
CGAGACTGGTGCGGAGGAGACGATTCTCACAAGTGCCGTGCGCATGGTAT
CTCCAAAGGTTCAAAGCTTTACCGCTCCTGTGTATGCAAAAGGGCTGCGC
CCATGCGCACCCCCACACTCGACTCGAGTGCTCAACGCCAAGATCAGATA
CACCCAGATTGTGTTTCCACCTCATCATCCCCCGTCCATACCTCTTCATC
ACGTTTCACTCCGCTGA
back to top