Gchil1790.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1790.t1
Unique Name	Gchil1790.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	340

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2481018..2482037 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704727.1
PFAMs	TPT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14301,ko:K15285
KEGG TC	1.I.1
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
Evalue	1.09e-96
EggNOG OGs	KOG1441@1\|root,KOG1441@2759\|Eukaryota
Description	carbohydrate transport
COG category	Z
BRITE	ko00000,ko00001,ko00002,ko02000,ko03019,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1790	Gchil1790	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2481018..2482037 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1790.t1.start1	Gchil1790.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2481018..2481020 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1790.t1.CDS1	Gchil1790.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2481018..2482037 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1790.t1.exon1	Gchil1790.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2481018..2482037 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1790.t1.stop1	Gchil1790.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2482035..2482037 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1790.t1	Gchil1790.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2481018..2482037 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2481018..2482037+
coding sequence from alignment at tig00004403_pilon:2481018..2482037+

mRNA sequence

>Gchil1790.t1 ID=Gchil1790.t1|Name=Gchil1790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=340bp
MAVKQGQVTVVHSAPQTEKDRSPSAQDDPSNAEVAAVIAFNFFSSTGIVS
ANKLVYNSGFNFGATLTFIHFVCTTLGLLLLARLGIFTPKRLDVRKAFKL
AVAGMGFVVFSNLSLQHNSVGFYQVMKHMTVVGVVIIEAVLFRKFLPYPF
LAALGTMCFGVLITGLTDFQVNTVGTLFALANILCTSFYQIWCGSLQKSL
EANPLQLQLYIAPLSALSIIPVVPLFDNYSPTSPDSIFQYVPTSSSVYRI
LFTGALALCVNVSIFLLIGKTSAVTYNVVGNGKTAFLFCVDFFVFKRPFD
IANVFGMALTLSGVVWYTQLKLKARAEAEKAEKEKSSST*

spliced messenger RNA

>Gchil1790.t1 ID=Gchil1790.t1|Name=Gchil1790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00004403_pilon:2481018..2482037+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTCAAACAGGGTCAGGTCACTGTTGTTCATTCCGCCCCGCAAAC
GGAGAAGGATCGATCCCCTTCCGCACAGGATGACCCCTCGAACGCCGAGG
TTGCGGCAGTGATTGCCTTTAACTTCTTTTCATCCACTGGCATCGTTTCA
GCCAACAAACTTGTCTACAACTCCGGCTTCAATTTCGGCGCCACTCTCAC
CTTTATTCATTTTGTGTGCACCACTCTGGGCCTTTTGTTGCTTGCGCGGT
TGGGCATTTTCACTCCAAAGCGACTTGATGTGCGCAAGGCTTTCAAACTT
GCCGTAGCTGGGATGGGCTTTGTCGTGTTTTCCAATCTCAGTTTGCAACA
CAACTCTGTTGGATTCTACCAGGTAATGAAGCACATGACTGTTGTCGGTG
TTGTCATCATTGAAGCTGTTTTGTTTCGCAAGTTCTTGCCTTATCCGTTT
TTGGCTGCGCTTGGCACCATGTGCTTCGGAGTGCTCATCACTGGCTTAAC
AGATTTTCAAGTCAACACGGTTGGAACGCTTTTCGCGCTTGCAAACATCC
TATGCACCTCCTTTTATCAAATATGGTGTGGTTCTCTTCAAAAATCCCTG
GAAGCCAACCCTCTACAACTTCAATTATACATTGCCCCTCTCTCAGCTTT
GTCAATTATTCCGGTTGTGCCCCTCTTTGACAATTATTCGCCCACATCGC
CTGACTCAATCTTTCAATACGTGCCCACAAGTTCGTCTGTTTACAGGATC
CTTTTCACCGGTGCGCTCGCACTTTGTGTCAATGTCTCAATATTTCTGTT
GATTGGAAAGACTTCTGCTGTAACCTATAATGTTGTTGGCAACGGGAAGA
CCGCATTTTTGTTCTGCGTCGACTTTTTTGTGTTTAAACGGCCTTTTGAT
ATAGCCAATGTGTTTGGTATGGCTCTCACCCTGTCTGGCGTGGTCTGGTA
CACCCAGCTTAAACTCAAGGCTCGCGCGGAAGCTGAAAAGGCGGAAAAGG
AGAAGTCGAGTAGCACTTAA

protein sequence of Gchil1790.t1

>Gchil1790.t1 ID=Gchil1790.t1|Name=Gchil1790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MAVKQGQVTVVHSAPQTEKDRSPSAQDDPSNAEVAAVIAFNFFSSTGIVS
ANKLVYNSGFNFGATLTFIHFVCTTLGLLLLARLGIFTPKRLDVRKAFKL
AVAGMGFVVFSNLSLQHNSVGFYQVMKHMTVVGVVIIEAVLFRKFLPYPF
LAALGTMCFGVLITGLTDFQVNTVGTLFALANILCTSFYQIWCGSLQKSL
EANPLQLQLYIAPLSALSIIPVVPLFDNYSPTSPDSIFQYVPTSSSVYRI
LFTGALALCVNVSIFLLIGKTSAVTYNVVGNGKTAFLFCVDFFVFKRPFD
IANVFGMALTLSGVVWYTQLKLKARAEAEKAEKEKSSST*

mRNA from alignment at tig00004403_pilon:2481018..2482037+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1790.t1 ID=Gchil1790.t1|Name=Gchil1790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00004403_pilon:2481018..2482037+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTCAAACAGGGTCAGGTCACTGTTGTTCATTCCGCCCCGCAAAC
GGAGAAGGATCGATCCCCTTCCGCACAGGATGACCCCTCGAACGCCGAGG
TTGCGGCAGTGATTGCCTTTAACTTCTTTTCATCCACTGGCATCGTTTCA
GCCAACAAACTTGTCTACAACTCCGGCTTCAATTTCGGCGCCACTCTCAC
CTTTATTCATTTTGTGTGCACCACTCTGGGCCTTTTGTTGCTTGCGCGGT
TGGGCATTTTCACTCCAAAGCGACTTGATGTGCGCAAGGCTTTCAAACTT
GCCGTAGCTGGGATGGGCTTTGTCGTGTTTTCCAATCTCAGTTTGCAACA
CAACTCTGTTGGATTCTACCAGGTAATGAAGCACATGACTGTTGTCGGTG
TTGTCATCATTGAAGCTGTTTTGTTTCGCAAGTTCTTGCCTTATCCGTTT
TTGGCTGCGCTTGGCACCATGTGCTTCGGAGTGCTCATCACTGGCTTAAC
AGATTTTCAAGTCAACACGGTTGGAACGCTTTTCGCGCTTGCAAACATCC
TATGCACCTCCTTTTATCAAATATGGTGTGGTTCTCTTCAAAAATCCCTG
GAAGCCAACCCTCTACAACTTCAATTATACATTGCCCCTCTCTCAGCTTT
GTCAATTATTCCGGTTGTGCCCCTCTTTGACAATTATTCGCCCACATCGC
CTGACTCAATCTTTCAATACGTGCCCACAAGTTCGTCTGTTTACAGGATC
CTTTTCACCGGTGCGCTCGCACTTTGTGTCAATGTCTCAATATTTCTGTT
GATTGGAAAGACTTCTGCTGTAACCTATAATGTTGTTGGCAACGGGAAGA
CCGCATTTTTGTTCTGCGTCGACTTTTTTGTGTTTAAACGGCCTTTTGAT
ATAGCCAATGTGTTTGGTATGGCTCTCACCCTGTCTGGCGTGGTCTGGTA
CACCCAGCTTAAACTCAAGGCTCGCGCGGAAGCTGAAAAGGCGGAAAAGG
AGAAGTCGAGTAGCACTTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:2481018..2482037+

>Gchil1790.t1 ID=Gchil1790.t1|Name=Gchil1790.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00004403_pilon:2481018..2482037+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTCAAACAGGGTCAGGTCACTGTTGTTCATTCCGCCCCGCAAAC
GGAGAAGGATCGATCCCCTTCCGCACAGGATGACCCCTCGAACGCCGAGG
TTGCGGCAGTGATTGCCTTTAACTTCTTTTCATCCACTGGCATCGTTTCA
GCCAACAAACTTGTCTACAACTCCGGCTTCAATTTCGGCGCCACTCTCAC
CTTTATTCATTTTGTGTGCACCACTCTGGGCCTTTTGTTGCTTGCGCGGT
TGGGCATTTTCACTCCAAAGCGACTTGATGTGCGCAAGGCTTTCAAACTT
GCCGTAGCTGGGATGGGCTTTGTCGTGTTTTCCAATCTCAGTTTGCAACA
CAACTCTGTTGGATTCTACCAGGTAATGAAGCACATGACTGTTGTCGGTG
TTGTCATCATTGAAGCTGTTTTGTTTCGCAAGTTCTTGCCTTATCCGTTT
TTGGCTGCGCTTGGCACCATGTGCTTCGGAGTGCTCATCACTGGCTTAAC
AGATTTTCAAGTCAACACGGTTGGAACGCTTTTCGCGCTTGCAAACATCC
TATGCACCTCCTTTTATCAAATATGGTGTGGTTCTCTTCAAAAATCCCTG
GAAGCCAACCCTCTACAACTTCAATTATACATTGCCCCTCTCTCAGCTTT
GTCAATTATTCCGGTTGTGCCCCTCTTTGACAATTATTCGCCCACATCGC
CTGACTCAATCTTTCAATACGTGCCCACAAGTTCGTCTGTTTACAGGATC
CTTTTCACCGGTGCGCTCGCACTTTGTGTCAATGTCTCAATATTTCTGTT
GATTGGAAAGACTTCTGCTGTAACCTATAATGTTGTTGGCAACGGGAAGA
CCGCATTTTTGTTCTGCGTCGACTTTTTTGTGTTTAAACGGCCTTTTGAT
ATAGCCAATGTGTTTGGTATGGCTCTCACCCTGTCTGGCGTGGTCTGGTA
CACCCAGCTTAAACTCAAGGCTCGCGCGGAAGCTGAAAAGGCGGAAAAGG
AGAAGTCGAGTAGCACTTAA