Gchil1779.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1779.t1
Unique NameGchil1779.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length695
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2364498..2366662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706752.1
PFAMsARID,RBB1NT,Tudor-knot
Max annot lvl2759|Eukaryota
KEGG koko:K07874,ko:K11763
KEGG Pathwayko05134,map05134
Evalue3.96e-65
EggNOG OGsKOG2744@1|root,KOG2744@2759|Eukaryota
DescriptionDNA binding
COG categoryK
BRITEko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1779Gchil1779Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2364428..2366662 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1779.t1Gchil1779.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2364498..2366662 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1779.t1.stop1Gchil1779.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2364498..2364500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1779.t1.CDS1Gchil1779.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2364498..2364533 -
Gchil1779.t1.CDS2Gchil1779.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2364614..2366662 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1779.t1.exon1Gchil1779.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2364498..2364533 -
Gchil1779.t1.exon2Gchil1779.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2364614..2366662 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1779.t1.intron1Gchil1779.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2364534..2364613 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1779.t1.start1Gchil1779.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2366660..2366662 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1779.t1 ID=Gchil1779.t1|Name=Gchil1779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=695bp
MSAALTSASTSPSPSPSPPAAAVVGVAVVAAEPAPSSPARGKPALALALA
AAPQHAAAPQHAAAPQHAAAPQHAAAAAVATPPLPPPLPPAPSTPTHSQQ
ANQQRQQSDQSQLLPVLSPSSSVPDVLTDDAIARNRRAAVDIGITLQAKA
SATQPRTGDRRTDFITDHYRFMNEIGRPFKLRRIGGAELDLYGLYKAVLE
RGGLQAVICTRAFKMVAQALELPKTCTSAAFILRIEYEKLLYMYEQKHVW
DREPHQAAPLYAVDRSRRAFNPFRHQIALPPPPPPSPPSPPPPPPAPTAP
AAVHPLQKPSSRPRRYAAVAASTAVAAAVSDDPYSYPVFPRRSRLTGLDE
HSLTVHDEQLLDDQLVNESAPHAIYVPNQPGERERVVAALWSPIHDDVAW
ALGTLNALSFDLRNIFVAQEFPGVLDALHEVLNRHMEDIVRARPFGVEAG
MEEFDPCAPRDVPLPAMDVQPAGYFDTGPGVGVSHRRMREDHLRTSTLQQ
YGNLFNTADPIAVDREQCAVVASNVLRNMSFFDRNAIFLANSVSILNISA
VMIQTMQVPANLREALMDMWINVSPYLNASPGSAGSAVLATCIKLLDPFN
DGAEQSRFMNCGEVLARLAASPERNEAAIVSTFDDVLPRLVDMLGGRSRR
YVNASLAALCNFSAFDWPARDRIARTPRALERLIGLDVLRVATG*
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spliced messenger RNA

>Gchil1779.t1 ID=Gchil1779.t1|Name=Gchil1779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2085bp|location=Sequence derived from alignment at tig00004403_pilon:2364498..2366662- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGCGCTTACGTCCGCGTCCACGTCGCCGTCGCCGTCGCCGTC
GCCGCCTGCTGCCGCTGTTGTTGGTGTCGCCGTCGTCGCGGCAGAGCCAG
CCCCGTCGTCGCCCGCCCGTGGCAAGCCCGCACTCGCACTCGCACTCGCT
GCTGCTCCGCAACACGCTGCTGCTCCGCAACACGCTGCTGCTCCGCAACA
CGCCGCTGCTCCGCAACACGCCGCTGCTGCTGCCGTCGCCACGCCGCCCC
TTCCGCCTCCGCTACCACCCGCTCCGTCCACCCCGACGCACTCGCAGCAA
GCGAACCAACAGCGTCAACAATCTGACCAGTCCCAGCTGCTTCCCGTGCT
CTCCCCCTCATCCTCCGTTCCCGATGTGCTCACCGACGATGCCATTGCGC
GCAACCGGCGCGCCGCCGTCGACATCGGCATCACACTACAGGCAAAGGCA
TCCGCCACACAGCCGCGCACCGGCGACCGTCGCACAGACTTTATCACCGA
CCACTACCGCTTCATGAACGAAATTGGCCGCCCCTTCAAGTTGCGCCGCA
TCGGCGGCGCCGAGCTCGACCTCTACGGCCTCTACAAGGCCGTGTTAGAG
CGCGGCGGCTTGCAGGCAGTTATCTGCACACGCGCCTTCAAGATGGTTGC
TCAGGCCCTCGAACTCCCGAAAACATGCACCTCCGCTGCCTTCATTCTGC
GCATCGAGTATGAAAAGTTGCTCTACATGTATGAGCAAAAGCACGTTTGG
GACCGTGAACCGCACCAGGCTGCCCCGCTTTACGCTGTCGACCGCTCGCG
CAGGGCCTTTAACCCGTTCCGACATCAGATTGCCCTGCCACCGCCACCGC
CGCCGTCCCCGCCGTCCCCGCCCCCGCCGCCCCCGGCCCCTACCGCCCCG
GCTGCCGTTCACCCGTTGCAGAAGCCGAGCAGCAGACCGCGTCGCTATGC
CGCCGTCGCCGCCAGCACTGCTGTCGCTGCCGCTGTTTCGGACGATCCTT
ACTCGTATCCCGTGTTCCCGAGACGCTCTCGACTCACCGGGCTCGACGAA
CACTCGCTCACCGTCCATGACGAACAGTTGCTCGACGATCAGCTTGTCAA
CGAGAGCGCCCCGCACGCCATATACGTGCCAAATCAGCCGGGAGAGCGAG
AACGGGTCGTGGCTGCGCTGTGGAGCCCGATTCACGACGACGTTGCGTGG
GCCCTTGGAACTCTCAATGCTCTCTCGTTTGACTTGCGCAACATTTTCGT
AGCGCAGGAATTCCCCGGCGTGCTCGATGCGCTCCATGAGGTACTCAACC
GTCACATGGAGGATATTGTACGCGCTCGACCATTCGGGGTTGAGGCTGGC
ATGGAGGAGTTTGACCCCTGTGCGCCCCGTGACGTTCCGCTTCCAGCCAT
GGACGTACAGCCTGCGGGCTATTTTGACACGGGCCCTGGCGTGGGGGTTT
CGCATCGGCGCATGCGGGAGGACCACTTGCGTACTTCCACGCTGCAGCAG
TATGGTAATCTCTTCAACACTGCGGATCCGATTGCTGTTGACCGAGAGCA
ATGTGCCGTTGTCGCGTCCAACGTTCTGAGAAACATGAGCTTTTTCGACC
GTAACGCCATCTTTCTCGCAAATTCCGTGTCCATTCTAAACATATCGGCT
GTCATGATTCAAACCATGCAGGTGCCCGCCAATTTGCGAGAGGCTCTAAT
GGACATGTGGATCAATGTATCGCCGTATCTAAACGCGTCTCCTGGTTCAG
CGGGAAGCGCTGTACTGGCAACATGCATCAAGCTGTTGGACCCTTTTAAT
GATGGCGCTGAGCAATCAAGGTTTATGAACTGCGGAGAGGTTCTTGCTCG
TCTAGCGGCAAGCCCCGAGCGGAACGAAGCAGCGATAGTTTCTACTTTTG
ACGACGTGTTGCCCCGCTTGGTGGACATGTTGGGAGGACGAAGTCGACGC
TATGTGAATGCCAGCCTGGCTGCGTTGTGCAACTTCAGCGCGTTTGACTG
GCCTGCCAGGGACCGAATTGCGCGAACGCCTCGAGCGCTGGAGCGCCTGA
TCGGTCTTGATGTACTACGAGTCGCGACTGGTTGA
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protein sequence of Gchil1779.t1

>Gchil1779.t1 ID=Gchil1779.t1|Name=Gchil1779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=695bp
MSAALTSASTSPSPSPSPPAAAVVGVAVVAAEPAPSSPARGKPALALALA
AAPQHAAAPQHAAAPQHAAAPQHAAAAAVATPPLPPPLPPAPSTPTHSQQ
ANQQRQQSDQSQLLPVLSPSSSVPDVLTDDAIARNRRAAVDIGITLQAKA
SATQPRTGDRRTDFITDHYRFMNEIGRPFKLRRIGGAELDLYGLYKAVLE
RGGLQAVICTRAFKMVAQALELPKTCTSAAFILRIEYEKLLYMYEQKHVW
DREPHQAAPLYAVDRSRRAFNPFRHQIALPPPPPPSPPSPPPPPPAPTAP
AAVHPLQKPSSRPRRYAAVAASTAVAAAVSDDPYSYPVFPRRSRLTGLDE
HSLTVHDEQLLDDQLVNESAPHAIYVPNQPGERERVVAALWSPIHDDVAW
ALGTLNALSFDLRNIFVAQEFPGVLDALHEVLNRHMEDIVRARPFGVEAG
MEEFDPCAPRDVPLPAMDVQPAGYFDTGPGVGVSHRRMREDHLRTSTLQQ
YGNLFNTADPIAVDREQCAVVASNVLRNMSFFDRNAIFLANSVSILNISA
VMIQTMQVPANLREALMDMWINVSPYLNASPGSAGSAVLATCIKLLDPFN
DGAEQSRFMNCGEVLARLAASPERNEAAIVSTFDDVLPRLVDMLGGRSRR
YVNASLAALCNFSAFDWPARDRIARTPRALERLIGLDVLRVATG*
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mRNA from alignment at tig00004403_pilon:2364498..2366662-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1779.t1 ID=Gchil1779.t1|Name=Gchil1779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2165bp|location=Sequence derived from alignment at tig00004403_pilon:2364498..2366662- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCGCGCTTACGTCCGCGTCCACGTCGCCGTCGCCGTCGCCGTC
GCCGCCTGCTGCCGCTGTTGTTGGTGTCGCCGTCGTCGCGGCAGAGCCAG
CCCCGTCGTCGCCCGCCCGTGGCAAGCCCGCACTCGCACTCGCACTCGCT
GCTGCTCCGCAACACGCTGCTGCTCCGCAACACGCTGCTGCTCCGCAACA
CGCCGCTGCTCCGCAACACGCCGCTGCTGCTGCCGTCGCCACGCCGCCCC
TTCCGCCTCCGCTACCACCCGCTCCGTCCACCCCGACGCACTCGCAGCAA
GCGAACCAACAGCGTCAACAATCTGACCAGTCCCAGCTGCTTCCCGTGCT
CTCCCCCTCATCCTCCGTTCCCGATGTGCTCACCGACGATGCCATTGCGC
GCAACCGGCGCGCCGCCGTCGACATCGGCATCACACTACAGGCAAAGGCA
TCCGCCACACAGCCGCGCACCGGCGACCGTCGCACAGACTTTATCACCGA
CCACTACCGCTTCATGAACGAAATTGGCCGCCCCTTCAAGTTGCGCCGCA
TCGGCGGCGCCGAGCTCGACCTCTACGGCCTCTACAAGGCCGTGTTAGAG
CGCGGCGGCTTGCAGGCAGTTATCTGCACACGCGCCTTCAAGATGGTTGC
TCAGGCCCTCGAACTCCCGAAAACATGCACCTCCGCTGCCTTCATTCTGC
GCATCGAGTATGAAAAGTTGCTCTACATGTATGAGCAAAAGCACGTTTGG
GACCGTGAACCGCACCAGGCTGCCCCGCTTTACGCTGTCGACCGCTCGCG
CAGGGCCTTTAACCCGTTCCGACATCAGATTGCCCTGCCACCGCCACCGC
CGCCGTCCCCGCCGTCCCCGCCCCCGCCGCCCCCGGCCCCTACCGCCCCG
GCTGCCGTTCACCCGTTGCAGAAGCCGAGCAGCAGACCGCGTCGCTATGC
CGCCGTCGCCGCCAGCACTGCTGTCGCTGCCGCTGTTTCGGACGATCCTT
ACTCGTATCCCGTGTTCCCGAGACGCTCTCGACTCACCGGGCTCGACGAA
CACTCGCTCACCGTCCATGACGAACAGTTGCTCGACGATCAGCTTGTCAA
CGAGAGCGCCCCGCACGCCATATACGTGCCAAATCAGCCGGGAGAGCGAG
AACGGGTCGTGGCTGCGCTGTGGAGCCCGATTCACGACGACGTTGCGTGG
GCCCTTGGAACTCTCAATGCTCTCTCGTTTGACTTGCGCAACATTTTCGT
AGCGCAGGAATTCCCCGGCGTGCTCGATGCGCTCCATGAGGTACTCAACC
GTCACATGGAGGATATTGTACGCGCTCGACCATTCGGGGTTGAGGCTGGC
ATGGAGGAGTTTGACCCCTGTGCGCCCCGTGACGTTCCGCTTCCAGCCAT
GGACGTACAGCCTGCGGGCTATTTTGACACGGGCCCTGGCGTGGGGGTTT
CGCATCGGCGCATGCGGGAGGACCACTTGCGTACTTCCACGCTGCAGCAG
TATGGTAATCTCTTCAACACTGCGGATCCGATTGCTGTTGACCGAGAGCA
ATGTGCCGTTGTCGCGTCCAACGTTCTGAGAAACATGAGCTTTTTCGACC
GTAACGCCATCTTTCTCGCAAATTCCGTGTCCATTCTAAACATATCGGCT
GTCATGATTCAAACCATGCAGGTGCCCGCCAATTTGCGAGAGGCTCTAAT
GGACATGTGGATCAATGTATCGCCGTATCTAAACGCGTCTCCTGGTTCAG
CGGGAAGCGCTGTACTGGCAACATGCATCAAGCTGTTGGACCCTTTTAAT
GATGGCGCTGAGCAATCAAGGTTTATGAACTGCGGAGAGGTTCTTGCTCG
TCTAGCGGCAAGCCCCGAGCGGAACGAAGCAGCGATAGTTTCTACTTTTG
ACGACGTGTTGCCCCGCTTGGTGGACATGTTGGGAGGACGAAGTCGACGC
TATGTGAATGCCAGCCTGGCTGCGTTGTGCAACTTCAGCGCGTTTGACTG
GCCTGCCAGGGACCGAATTGCGCGAACGCCTCGAGCGCTGGAGCGCCTGG
TTGGCATGCTTTCAGACGCCGAATTGGCCCCGCGGGCTGCTTTGACGTTG
TTGAACTTGGCTGAGGCTCCGAACAACAGATCGGTCTTGATGTACTACGA
GTCGCGACTGGTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2364498..2366662-

>Gchil1779.t1 ID=Gchil1779.t1|Name=Gchil1779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2085bp|location=Sequence derived from alignment at tig00004403_pilon:2364498..2366662- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCGCGCTTACGTCCGCGTCCACGTCGCCGTCGCCGTCGCCGTC
GCCGCCTGCTGCCGCTGTTGTTGGTGTCGCCGTCGTCGCGGCAGAGCCAG
CCCCGTCGTCGCCCGCCCGTGGCAAGCCCGCACTCGCACTCGCACTCGCT
GCTGCTCCGCAACACGCTGCTGCTCCGCAACACGCTGCTGCTCCGCAACA
CGCCGCTGCTCCGCAACACGCCGCTGCTGCTGCCGTCGCCACGCCGCCCC
TTCCGCCTCCGCTACCACCCGCTCCGTCCACCCCGACGCACTCGCAGCAA
GCGAACCAACAGCGTCAACAATCTGACCAGTCCCAGCTGCTTCCCGTGCT
CTCCCCCTCATCCTCCGTTCCCGATGTGCTCACCGACGATGCCATTGCGC
GCAACCGGCGCGCCGCCGTCGACATCGGCATCACACTACAGGCAAAGGCA
TCCGCCACACAGCCGCGCACCGGCGACCGTCGCACAGACTTTATCACCGA
CCACTACCGCTTCATGAACGAAATTGGCCGCCCCTTCAAGTTGCGCCGCA
TCGGCGGCGCCGAGCTCGACCTCTACGGCCTCTACAAGGCCGTGTTAGAG
CGCGGCGGCTTGCAGGCAGTTATCTGCACACGCGCCTTCAAGATGGTTGC
TCAGGCCCTCGAACTCCCGAAAACATGCACCTCCGCTGCCTTCATTCTGC
GCATCGAGTATGAAAAGTTGCTCTACATGTATGAGCAAAAGCACGTTTGG
GACCGTGAACCGCACCAGGCTGCCCCGCTTTACGCTGTCGACCGCTCGCG
CAGGGCCTTTAACCCGTTCCGACATCAGATTGCCCTGCCACCGCCACCGC
CGCCGTCCCCGCCGTCCCCGCCCCCGCCGCCCCCGGCCCCTACCGCCCCG
GCTGCCGTTCACCCGTTGCAGAAGCCGAGCAGCAGACCGCGTCGCTATGC
CGCCGTCGCCGCCAGCACTGCTGTCGCTGCCGCTGTTTCGGACGATCCTT
ACTCGTATCCCGTGTTCCCGAGACGCTCTCGACTCACCGGGCTCGACGAA
CACTCGCTCACCGTCCATGACGAACAGTTGCTCGACGATCAGCTTGTCAA
CGAGAGCGCCCCGCACGCCATATACGTGCCAAATCAGCCGGGAGAGCGAG
AACGGGTCGTGGCTGCGCTGTGGAGCCCGATTCACGACGACGTTGCGTGG
GCCCTTGGAACTCTCAATGCTCTCTCGTTTGACTTGCGCAACATTTTCGT
AGCGCAGGAATTCCCCGGCGTGCTCGATGCGCTCCATGAGGTACTCAACC
GTCACATGGAGGATATTGTACGCGCTCGACCATTCGGGGTTGAGGCTGGC
ATGGAGGAGTTTGACCCCTGTGCGCCCCGTGACGTTCCGCTTCCAGCCAT
GGACGTACAGCCTGCGGGCTATTTTGACACGGGCCCTGGCGTGGGGGTTT
CGCATCGGCGCATGCGGGAGGACCACTTGCGTACTTCCACGCTGCAGCAG
TATGGTAATCTCTTCAACACTGCGGATCCGATTGCTGTTGACCGAGAGCA
ATGTGCCGTTGTCGCGTCCAACGTTCTGAGAAACATGAGCTTTTTCGACC
GTAACGCCATCTTTCTCGCAAATTCCGTGTCCATTCTAAACATATCGGCT
GTCATGATTCAAACCATGCAGGTGCCCGCCAATTTGCGAGAGGCTCTAAT
GGACATGTGGATCAATGTATCGCCGTATCTAAACGCGTCTCCTGGTTCAG
CGGGAAGCGCTGTACTGGCAACATGCATCAAGCTGTTGGACCCTTTTAAT
GATGGCGCTGAGCAATCAAGGTTTATGAACTGCGGAGAGGTTCTTGCTCG
TCTAGCGGCAAGCCCCGAGCGGAACGAAGCAGCGATAGTTTCTACTTTTG
ACGACGTGTTGCCCCGCTTGGTGGACATGTTGGGAGGACGAAGTCGACGC
TATGTGAATGCCAGCCTGGCTGCGTTGTGCAACTTCAGCGCGTTTGACTG
GCCTGCCAGGGACCGAATTGCGCGAACGCCTCGAGCGCTGGAGCGCCTGA
TCGGTCTTGATGTACTACGAGTCGCGACTGGTTGA
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