Gchil1766.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1766.t1
Unique Name	Gchil1766.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	387

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2272898..2274058 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	218851.Aquca_010_00407.1
PFAMs	Acyltransf_C,Acyltransferase
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00004,RC00037,RC00039
KEGG ko	ko:K13513
KEGG Reaction	R02241,R09034,R09036,R09037,R09381
KEGG Pathway	ko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG Module	M00089
Evalue	2.28e-41
EggNOG OGs	COG0204@1\|root,KOG1505@2759\|Eukaryota,37HK0@33090\|Viridiplantae,3GAJ0@35493\|Streptophyta
EC	2.3.1.51
Description	1-acyl-sn-glycerol-3-phosphate acyltransferase
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1766	Gchil1766	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2272898..2274058 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1766.t1.start1	Gchil1766.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2272898..2272900 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1766.t1.CDS1	Gchil1766.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2272898..2274058 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1766.t1.exon1	Gchil1766.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2272898..2274058 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1766.t1.stop1	Gchil1766.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2274056..2274058 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1766.t1	Gchil1766.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2272898..2274058 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2272898..2274058+
coding sequence from alignment at tig00004403_pilon:2272898..2274058+

mRNA sequence

>Gchil1766.t1 ID=Gchil1766.t1|Name=Gchil1766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp
MLRKVMKLRVFRSVLSTLAIFVCALGAATVATLFETFSFVFVRPFSLTQH
RRICLRFSHAFFLLAPFLLEKWSSIKFRSYGDSISPKGSYLAVINHHSDI
DWLLGLAYVSRFRYPYPGNSKSVVKASLRKVPIFGRLLHYAEFMFITRSW
AADRDRFFQALKSLRGYSTTVAPLWFVLYPEGTRLTPDKLEHSQTYATSR
GLKPHHNVLFPRFKAFVSIVSTLRDDFDGIVDATFMFEGKLPSMRSALAG
TDNTVVHTHQRFYPMSQVPEDKAELEAWLLKRWYEKDDLLTDFKRDPQSL
GPQHESCVPAGETPSLMPFYSLVTTSAFFSVIITYAFSRIPNGLTLLMVS
TALTIGLSAVFVLLNIKPSRKGSSTGTNIRSEVSKS*

spliced messenger RNA

>Gchil1766.t1 ID=Gchil1766.t1|Name=Gchil1766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00004403_pilon:2272898..2274058+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAGAAAAGTCATGAAGCTTCGCGTGTTCAGGTCTGTTCTTTCCAC
GCTAGCAATCTTCGTCTGTGCGCTGGGAGCCGCAACTGTGGCCACCCTTT
TCGAAACGTTTAGTTTTGTGTTTGTGCGTCCTTTCTCCCTCACTCAACAC
CGAAGAATTTGTCTTCGCTTTTCGCACGCTTTCTTTCTGCTGGCACCTTT
TCTTCTTGAGAAATGGTCTTCTATCAAATTTCGCTCCTATGGCGATTCTA
TATCTCCGAAAGGGAGCTATCTTGCTGTGATAAACCATCACTCCGACATT
GACTGGTTGTTGGGTCTTGCATACGTCTCTCGTTTTCGCTATCCGTATCC
TGGAAATTCTAAGTCGGTTGTCAAGGCATCGCTTCGTAAGGTGCCAATCT
TCGGCCGCCTCTTGCACTATGCAGAATTTATGTTCATCACCCGATCTTGG
GCTGCCGATCGAGATCGTTTTTTTCAAGCGCTTAAGTCATTAAGGGGATA
TTCTACGACAGTTGCCCCTCTTTGGTTTGTTCTTTATCCTGAGGGAACTC
GACTCACACCCGACAAGCTTGAACACTCTCAGACATATGCCACTTCACGC
GGTTTGAAACCCCATCACAATGTCCTATTCCCTCGTTTCAAAGCGTTCGT
ATCCATTGTGTCTACGCTACGCGATGATTTTGATGGTATCGTGGATGCAA
CTTTCATGTTCGAAGGAAAACTTCCATCCATGAGAAGCGCCTTGGCTGGA
ACAGACAATACGGTAGTTCACACTCATCAGCGCTTCTATCCAATGAGCCA
AGTTCCAGAAGATAAGGCAGAGCTTGAGGCATGGCTTCTGAAAAGATGGT
ATGAGAAGGATGATCTATTGACTGACTTCAAACGAGATCCGCAATCGCTT
GGACCACAGCATGAAAGTTGCGTTCCCGCTGGTGAGACGCCATCTCTGAT
GCCGTTCTATTCACTCGTCACTACTTCGGCGTTCTTCTCGGTTATAATTA
CATACGCCTTTTCCAGAATACCAAATGGATTGACACTGCTCATGGTGTCC
ACTGCCCTTACAATTGGACTCTCTGCCGTTTTTGTTTTGCTCAATATCAA
ACCCTCTCGAAAAGGGTCAAGCACAGGGACAAACATCAGAAGCGAGGTCT
CTAAGTCTTGA

protein sequence of Gchil1766.t1

>Gchil1766.t1 ID=Gchil1766.t1|Name=Gchil1766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=387bp
MLRKVMKLRVFRSVLSTLAIFVCALGAATVATLFETFSFVFVRPFSLTQH
RRICLRFSHAFFLLAPFLLEKWSSIKFRSYGDSISPKGSYLAVINHHSDI
DWLLGLAYVSRFRYPYPGNSKSVVKASLRKVPIFGRLLHYAEFMFITRSW
AADRDRFFQALKSLRGYSTTVAPLWFVLYPEGTRLTPDKLEHSQTYATSR
GLKPHHNVLFPRFKAFVSIVSTLRDDFDGIVDATFMFEGKLPSMRSALAG
TDNTVVHTHQRFYPMSQVPEDKAELEAWLLKRWYEKDDLLTDFKRDPQSL
GPQHESCVPAGETPSLMPFYSLVTTSAFFSVIITYAFSRIPNGLTLLMVS
TALTIGLSAVFVLLNIKPSRKGSSTGTNIRSEVSKS*

mRNA from alignment at tig00004403_pilon:2272898..2274058+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1766.t1 ID=Gchil1766.t1|Name=Gchil1766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00004403_pilon:2272898..2274058+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAGAAAAGTCATGAAGCTTCGCGTGTTCAGGTCTGTTCTTTCCAC
GCTAGCAATCTTCGTCTGTGCGCTGGGAGCCGCAACTGTGGCCACCCTTT
TCGAAACGTTTAGTTTTGTGTTTGTGCGTCCTTTCTCCCTCACTCAACAC
CGAAGAATTTGTCTTCGCTTTTCGCACGCTTTCTTTCTGCTGGCACCTTT
TCTTCTTGAGAAATGGTCTTCTATCAAATTTCGCTCCTATGGCGATTCTA
TATCTCCGAAAGGGAGCTATCTTGCTGTGATAAACCATCACTCCGACATT
GACTGGTTGTTGGGTCTTGCATACGTCTCTCGTTTTCGCTATCCGTATCC
TGGAAATTCTAAGTCGGTTGTCAAGGCATCGCTTCGTAAGGTGCCAATCT
TCGGCCGCCTCTTGCACTATGCAGAATTTATGTTCATCACCCGATCTTGG
GCTGCCGATCGAGATCGTTTTTTTCAAGCGCTTAAGTCATTAAGGGGATA
TTCTACGACAGTTGCCCCTCTTTGGTTTGTTCTTTATCCTGAGGGAACTC
GACTCACACCCGACAAGCTTGAACACTCTCAGACATATGCCACTTCACGC
GGTTTGAAACCCCATCACAATGTCCTATTCCCTCGTTTCAAAGCGTTCGT
ATCCATTGTGTCTACGCTACGCGATGATTTTGATGGTATCGTGGATGCAA
CTTTCATGTTCGAAGGAAAACTTCCATCCATGAGAAGCGCCTTGGCTGGA
ACAGACAATACGGTAGTTCACACTCATCAGCGCTTCTATCCAATGAGCCA
AGTTCCAGAAGATAAGGCAGAGCTTGAGGCATGGCTTCTGAAAAGATGGT
ATGAGAAGGATGATCTATTGACTGACTTCAAACGAGATCCGCAATCGCTT
GGACCACAGCATGAAAGTTGCGTTCCCGCTGGTGAGACGCCATCTCTGAT
GCCGTTCTATTCACTCGTCACTACTTCGGCGTTCTTCTCGGTTATAATTA
CATACGCCTTTTCCAGAATACCAAATGGATTGACACTGCTCATGGTGTCC
ACTGCCCTTACAATTGGACTCTCTGCCGTTTTTGTTTTGCTCAATATCAA
ACCCTCTCGAAAAGGGTCAAGCACAGGGACAAACATCAGAAGCGAGGTCT
CTAAGTCTTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:2272898..2274058+

>Gchil1766.t1 ID=Gchil1766.t1|Name=Gchil1766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00004403_pilon:2272898..2274058+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCAGAAAAGTCATGAAGCTTCGCGTGTTCAGGTCTGTTCTTTCCAC
GCTAGCAATCTTCGTCTGTGCGCTGGGAGCCGCAACTGTGGCCACCCTTT
TCGAAACGTTTAGTTTTGTGTTTGTGCGTCCTTTCTCCCTCACTCAACAC
CGAAGAATTTGTCTTCGCTTTTCGCACGCTTTCTTTCTGCTGGCACCTTT
TCTTCTTGAGAAATGGTCTTCTATCAAATTTCGCTCCTATGGCGATTCTA
TATCTCCGAAAGGGAGCTATCTTGCTGTGATAAACCATCACTCCGACATT
GACTGGTTGTTGGGTCTTGCATACGTCTCTCGTTTTCGCTATCCGTATCC
TGGAAATTCTAAGTCGGTTGTCAAGGCATCGCTTCGTAAGGTGCCAATCT
TCGGCCGCCTCTTGCACTATGCAGAATTTATGTTCATCACCCGATCTTGG
GCTGCCGATCGAGATCGTTTTTTTCAAGCGCTTAAGTCATTAAGGGGATA
TTCTACGACAGTTGCCCCTCTTTGGTTTGTTCTTTATCCTGAGGGAACTC
GACTCACACCCGACAAGCTTGAACACTCTCAGACATATGCCACTTCACGC
GGTTTGAAACCCCATCACAATGTCCTATTCCCTCGTTTCAAAGCGTTCGT
ATCCATTGTGTCTACGCTACGCGATGATTTTGATGGTATCGTGGATGCAA
CTTTCATGTTCGAAGGAAAACTTCCATCCATGAGAAGCGCCTTGGCTGGA
ACAGACAATACGGTAGTTCACACTCATCAGCGCTTCTATCCAATGAGCCA
AGTTCCAGAAGATAAGGCAGAGCTTGAGGCATGGCTTCTGAAAAGATGGT
ATGAGAAGGATGATCTATTGACTGACTTCAAACGAGATCCGCAATCGCTT
GGACCACAGCATGAAAGTTGCGTTCCCGCTGGTGAGACGCCATCTCTGAT
GCCGTTCTATTCACTCGTCACTACTTCGGCGTTCTTCTCGGTTATAATTA
CATACGCCTTTTCCAGAATACCAAATGGATTGACACTGCTCATGGTGTCC
ACTGCCCTTACAATTGGACTCTCTGCCGTTTTTGTTTTGCTCAATATCAA
ACCCTCTCGAAAAGGGTCAAGCACAGGGACAAACATCAGAAGCGAGGTCT
CTAAGTCTTGA