Gchil1764.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1764.t1
Unique NameGchil1764.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2215011..2216315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122211.JMLW01000038_gene1340
PFAMsAda_Zn_binding,Exo_endo_phos,HHH_3
Max annot lvl135619|Oceanospirillales
Evalue1.37e-05
EggNOG OGsCOG3568@1|root,COG3568@2|Bacteria,1RA4I@1224|Proteobacteria,1S2C6@1236|Gammaproteobacteria,1XNXJ@135619|Oceanospirillales
Descriptiondeoxyribonuclease I
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1764Gchil1764Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2215011..2216315 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1764.t1.stop1Gchil1764.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2215011..2215013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1764.t1.CDS1Gchil1764.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2215011..2216315 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1764.t1.exon1Gchil1764.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2215011..2216315 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1764.t1.start1Gchil1764.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2216313..2216315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1764.t1Gchil1764.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2215011..2216315 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1764.t1 ID=Gchil1764.t1|Name=Gchil1764.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MPPKYQSRAFLPTYEHLDRRDSAAVLLEFEHQTRLSLESPTESSATEIHR
KLVRLNGATDEELSNDLQVVHGVGIRTLNKITTERALNGSFQGAADFDRR
VKGIKFSKLEKACAEQDLVLSFETSTTKRSVRTRRGRPYIHPSLLRGASS
FAEEKRQQVKEDIVLSSWNAGRMSVYSERYEEKIGHLFRFITDAQTDILS
LQEVCEGVAEDLCDRLREKSGVIWRCCEAYGGDEVLGSGLATLYRLDKFF
EYRGVRQLESLLIALPFKRAPEIILLGTSERSDEYIALINVHLDQVDPRE
EIRAVASIVRKLRQLLQDDLMNDTIIVLGDFNMNSDSVAFSPLREAALVE
LVRPPAEPGLLWHPYGTIQSATTIGNQWYDNIWISEGSRGRVKDAWCFDF
GGRRQSLGQSGHKHAAQKRASCSDHLPVVVRVQI*
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spliced messenger RNA

>Gchil1764.t1 ID=Gchil1764.t1|Name=Gchil1764.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004403_pilon:2215011..2216315- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCCAAATACCAGTCTCGAGCATTTCTTCCAACATATGAGCACCT
TGATCGAAGAGACTCGGCTGCAGTTCTCTTGGAATTCGAACATCAAACGA
GACTTTCCTTAGAATCGCCGACTGAATCATCCGCGACTGAGATCCATCGA
AAACTTGTGCGACTTAACGGAGCAACAGACGAAGAGCTCTCGAACGATCT
GCAAGTGGTGCACGGAGTCGGAATAAGAACGTTGAACAAAATTACAACCG
AGCGAGCGCTTAATGGAAGCTTCCAAGGAGCTGCTGATTTTGACAGACGC
GTCAAAGGTATCAAGTTTTCTAAACTAGAAAAAGCATGTGCTGAGCAGGA
TTTAGTCCTGTCTTTCGAAACATCAACGACCAAGCGCTCAGTGCGAACAA
GAAGAGGAAGACCGTACATTCATCCCTCACTCTTGCGAGGAGCTTCGTCA
TTTGCTGAAGAAAAAAGGCAACAAGTCAAGGAAGATATCGTCTTATCCTC
GTGGAACGCGGGTAGAATGTCAGTATACAGCGAACGATACGAAGAGAAGA
TTGGCCATCTTTTTCGATTTATTACTGATGCCCAAACCGATATTCTCTCT
CTTCAAGAAGTGTGTGAAGGCGTTGCTGAAGATTTGTGTGATCGATTGCG
GGAAAAATCAGGAGTAATTTGGCGTTGTTGCGAGGCTTACGGTGGTGACG
AGGTGTTGGGAAGTGGGTTGGCCACTCTATATCGTCTTGACAAGTTTTTC
GAGTACCGTGGTGTCAGGCAACTGGAAAGTCTTCTAATTGCACTGCCTTT
CAAACGTGCTCCTGAAATAATACTTTTAGGTACGAGCGAAAGGAGCGATG
AATATATAGCTTTGATAAACGTACATCTCGACCAAGTCGACCCGCGGGAA
GAAATTAGGGCAGTTGCTTCGATTGTGCGCAAGCTTCGCCAGCTTCTTCA
AGATGACTTGATGAACGACACGATTATTGTGCTTGGGGATTTCAACATGA
ACTCTGATTCCGTCGCATTTTCTCCGTTGAGAGAGGCAGCGCTTGTTGAA
CTGGTGAGACCACCGGCGGAGCCAGGTTTGCTTTGGCACCCCTACGGCAC
GATACAGTCTGCAACCACAATTGGAAACCAATGGTACGATAATATATGGA
TTTCCGAAGGCTCTCGCGGTCGAGTGAAGGACGCATGGTGCTTTGATTTT
GGCGGACGCCGCCAAAGCCTTGGCCAAAGCGGACACAAACATGCCGCACA
AAAGCGGGCATCTTGCAGCGACCACCTGCCGGTTGTGGTCAGAGTCCAGA
TCTGA
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protein sequence of Gchil1764.t1

>Gchil1764.t1 ID=Gchil1764.t1|Name=Gchil1764.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MPPKYQSRAFLPTYEHLDRRDSAAVLLEFEHQTRLSLESPTESSATEIHR
KLVRLNGATDEELSNDLQVVHGVGIRTLNKITTERALNGSFQGAADFDRR
VKGIKFSKLEKACAEQDLVLSFETSTTKRSVRTRRGRPYIHPSLLRGASS
FAEEKRQQVKEDIVLSSWNAGRMSVYSERYEEKIGHLFRFITDAQTDILS
LQEVCEGVAEDLCDRLREKSGVIWRCCEAYGGDEVLGSGLATLYRLDKFF
EYRGVRQLESLLIALPFKRAPEIILLGTSERSDEYIALINVHLDQVDPRE
EIRAVASIVRKLRQLLQDDLMNDTIIVLGDFNMNSDSVAFSPLREAALVE
LVRPPAEPGLLWHPYGTIQSATTIGNQWYDNIWISEGSRGRVKDAWCFDF
GGRRQSLGQSGHKHAAQKRASCSDHLPVVVRVQI*
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mRNA from alignment at tig00004403_pilon:2215011..2216315-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1764.t1 ID=Gchil1764.t1|Name=Gchil1764.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004403_pilon:2215011..2216315- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCCAAATACCAGTCTCGAGCATTTCTTCCAACATATGAGCACCT
TGATCGAAGAGACTCGGCTGCAGTTCTCTTGGAATTCGAACATCAAACGA
GACTTTCCTTAGAATCGCCGACTGAATCATCCGCGACTGAGATCCATCGA
AAACTTGTGCGACTTAACGGAGCAACAGACGAAGAGCTCTCGAACGATCT
GCAAGTGGTGCACGGAGTCGGAATAAGAACGTTGAACAAAATTACAACCG
AGCGAGCGCTTAATGGAAGCTTCCAAGGAGCTGCTGATTTTGACAGACGC
GTCAAAGGTATCAAGTTTTCTAAACTAGAAAAAGCATGTGCTGAGCAGGA
TTTAGTCCTGTCTTTCGAAACATCAACGACCAAGCGCTCAGTGCGAACAA
GAAGAGGAAGACCGTACATTCATCCCTCACTCTTGCGAGGAGCTTCGTCA
TTTGCTGAAGAAAAAAGGCAACAAGTCAAGGAAGATATCGTCTTATCCTC
GTGGAACGCGGGTAGAATGTCAGTATACAGCGAACGATACGAAGAGAAGA
TTGGCCATCTTTTTCGATTTATTACTGATGCCCAAACCGATATTCTCTCT
CTTCAAGAAGTGTGTGAAGGCGTTGCTGAAGATTTGTGTGATCGATTGCG
GGAAAAATCAGGAGTAATTTGGCGTTGTTGCGAGGCTTACGGTGGTGACG
AGGTGTTGGGAAGTGGGTTGGCCACTCTATATCGTCTTGACAAGTTTTTC
GAGTACCGTGGTGTCAGGCAACTGGAAAGTCTTCTAATTGCACTGCCTTT
CAAACGTGCTCCTGAAATAATACTTTTAGGTACGAGCGAAAGGAGCGATG
AATATATAGCTTTGATAAACGTACATCTCGACCAAGTCGACCCGCGGGAA
GAAATTAGGGCAGTTGCTTCGATTGTGCGCAAGCTTCGCCAGCTTCTTCA
AGATGACTTGATGAACGACACGATTATTGTGCTTGGGGATTTCAACATGA
ACTCTGATTCCGTCGCATTTTCTCCGTTGAGAGAGGCAGCGCTTGTTGAA
CTGGTGAGACCACCGGCGGAGCCAGGTTTGCTTTGGCACCCCTACGGCAC
GATACAGTCTGCAACCACAATTGGAAACCAATGGTACGATAATATATGGA
TTTCCGAAGGCTCTCGCGGTCGAGTGAAGGACGCATGGTGCTTTGATTTT
GGCGGACGCCGCCAAAGCCTTGGCCAAAGCGGACACAAACATGCCGCACA
AAAGCGGGCATCTTGCAGCGACCACCTGCCGGTTGTGGTCAGAGTCCAGA
TCTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2215011..2216315-

>Gchil1764.t1 ID=Gchil1764.t1|Name=Gchil1764.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00004403_pilon:2215011..2216315- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCCCAAATACCAGTCTCGAGCATTTCTTCCAACATATGAGCACCT
TGATCGAAGAGACTCGGCTGCAGTTCTCTTGGAATTCGAACATCAAACGA
GACTTTCCTTAGAATCGCCGACTGAATCATCCGCGACTGAGATCCATCGA
AAACTTGTGCGACTTAACGGAGCAACAGACGAAGAGCTCTCGAACGATCT
GCAAGTGGTGCACGGAGTCGGAATAAGAACGTTGAACAAAATTACAACCG
AGCGAGCGCTTAATGGAAGCTTCCAAGGAGCTGCTGATTTTGACAGACGC
GTCAAAGGTATCAAGTTTTCTAAACTAGAAAAAGCATGTGCTGAGCAGGA
TTTAGTCCTGTCTTTCGAAACATCAACGACCAAGCGCTCAGTGCGAACAA
GAAGAGGAAGACCGTACATTCATCCCTCACTCTTGCGAGGAGCTTCGTCA
TTTGCTGAAGAAAAAAGGCAACAAGTCAAGGAAGATATCGTCTTATCCTC
GTGGAACGCGGGTAGAATGTCAGTATACAGCGAACGATACGAAGAGAAGA
TTGGCCATCTTTTTCGATTTATTACTGATGCCCAAACCGATATTCTCTCT
CTTCAAGAAGTGTGTGAAGGCGTTGCTGAAGATTTGTGTGATCGATTGCG
GGAAAAATCAGGAGTAATTTGGCGTTGTTGCGAGGCTTACGGTGGTGACG
AGGTGTTGGGAAGTGGGTTGGCCACTCTATATCGTCTTGACAAGTTTTTC
GAGTACCGTGGTGTCAGGCAACTGGAAAGTCTTCTAATTGCACTGCCTTT
CAAACGTGCTCCTGAAATAATACTTTTAGGTACGAGCGAAAGGAGCGATG
AATATATAGCTTTGATAAACGTACATCTCGACCAAGTCGACCCGCGGGAA
GAAATTAGGGCAGTTGCTTCGATTGTGCGCAAGCTTCGCCAGCTTCTTCA
AGATGACTTGATGAACGACACGATTATTGTGCTTGGGGATTTCAACATGA
ACTCTGATTCCGTCGCATTTTCTCCGTTGAGAGAGGCAGCGCTTGTTGAA
CTGGTGAGACCACCGGCGGAGCCAGGTTTGCTTTGGCACCCCTACGGCAC
GATACAGTCTGCAACCACAATTGGAAACCAATGGTACGATAATATATGGA
TTTCCGAAGGCTCTCGCGGTCGAGTGAAGGACGCATGGTGCTTTGATTTT
GGCGGACGCCGCCAAAGCCTTGGCCAAAGCGGACACAAACATGCCGCACA
AAAGCGGGCATCTTGCAGCGACCACCTGCCGGTTGTGGTCAGAGTCCAGA
TCTGA
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