Gchil1761.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1761.t1
Unique NameGchil1761.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2208815..2209630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5811.TGME49_105490
PFAMsPDCD2_C
Max annot lvl5794|Apicomplexa
KEGG koko:K14801
Evalue1.41e-14
EggNOG OGsKOG2061@1|root,KOG2061@2759|Eukaryota,3YAZN@5794|Apicomplexa,3YKZT@5796|Coccidia,3YR4K@5809|Sarcocystidae
DescriptionProgrammed cell death protein
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1761Gchil1761Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2208815..2209630 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1761.t1.start1Gchil1761.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2208815..2208817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1761.t1.CDS1Gchil1761.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2208815..2209630 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1761.t1.exon1Gchil1761.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2208815..2209630 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1761.t1.stop1Gchil1761.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2209628..2209630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1761.t1Gchil1761.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2208815..2209630 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1761.t1 ID=Gchil1761.t1|Name=Gchil1761.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=272bp
MRCPSCRDVVYCGRACQLVHWRSDHHALPADADADADADAGAGDASTLRF
REVRIVTDVHPDVSDDSSSADSHSADSHSADSHSTDSHSTDSQHEHSVDQ
PQQQPPPHGTFQDADEHELPEELFHARTRDTDHTYKRFARVVAAAPHQVI
RYERGGVPLWGAAARQCEQPPTCERCGAARVFELQLMPQLLYFVCGAGRV
RTACARRDAAIQTKKTTTKKTTTKKTLELDDDDDIDLDWLTVCIFCCERS
CGGDAPYVREFAWLQSGVPQH*
back to top

spliced messenger RNA

>Gchil1761.t1 ID=Gchil1761.t1|Name=Gchil1761.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00004403_pilon:2208815..2209630+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTGCCCGAGCTGCCGAGATGTTGTGTATTGCGGACGCGCGTGTCA
GCTTGTGCATTGGCGGAGTGACCACCATGCTCTCCCTgctgacgccgacg
ctgacgctgatgctgatgctggcgctggcgatgcttcgacgctgcgctTC
CGCGAGGTGCGCATCGTCACCGACGTGCACCCCGACGTATCCGATGATTC
CAGCAGCGCCGACTCGCACAGCGCCGACTCGCACAGCGCCGACTCGCACA
GCACCGACTCGCACAGCACCGACTCACAGCACGAGCACTCAGTCGACCAA
CCCCAACAGCAGCCGCCGCCCCACGGTACGTTTCAGGACGCGGACGAGCA
CGAGTTACCCGAAGAGTTGTTCCACGCGCGCACGCGCGACACAGACCACA
CGTACAAACGCTTCGCACGAGTCGTGGCCGCCGCTCCACACCAGGTGATA
CGCTACGAGCGCGGCGGGGTTCCATTGTGGGGTGCGGCTGCGCGCCAGTG
CGAACAGCCGCCAACATGTGAGCGATGCGGCGCGGCACGCGTGTTCGAGC
TGCAACTTATGCCGCAGTTGTTGTACTTTGTGTGCGGTGCCGGACGCGTG
CGCACGGCGTGTGCGCGGCGAGACGCGGCAATtcagacgaagaagacgac
gacgaagaagacgacgacgaagaagacgcttgaattggacgatgacgatg
acattgatttggactgGCTCACCGTGTGTATCTTCTGCTGTGAGCGTAGC
TGTGGTGGCGACGCGCCGTACGTGCGCGAGTTTGCGTGGCTGCAGTCGGG
TGTCCCGCAGCATTGA
back to top

protein sequence of Gchil1761.t1

>Gchil1761.t1 ID=Gchil1761.t1|Name=Gchil1761.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=272bp
MRCPSCRDVVYCGRACQLVHWRSDHHALPADADADADADAGAGDASTLRF
REVRIVTDVHPDVSDDSSSADSHSADSHSADSHSTDSHSTDSQHEHSVDQ
PQQQPPPHGTFQDADEHELPEELFHARTRDTDHTYKRFARVVAAAPHQVI
RYERGGVPLWGAAARQCEQPPTCERCGAARVFELQLMPQLLYFVCGAGRV
RTACARRDAAIQTKKTTTKKTTTKKTLELDDDDDIDLDWLTVCIFCCERS
CGGDAPYVREFAWLQSGVPQH*
back to top

mRNA from alignment at tig00004403_pilon:2208815..2209630+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1761.t1 ID=Gchil1761.t1|Name=Gchil1761.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00004403_pilon:2208815..2209630+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTGCCCGAGCTGCCGAGATGTTGTGTATTGCGGACGCGCGTGTCA
GCTTGTGCATTGGCGGAGTGACCACCATGCTCTCCCTgctgacgccgacg
ctgacgctgatgctgatgctggcgctggcgatgcttcgacgctgcgctTC
CGCGAGGTGCGCATCGTCACCGACGTGCACCCCGACGTATCCGATGATTC
CAGCAGCGCCGACTCGCACAGCGCCGACTCGCACAGCGCCGACTCGCACA
GCACCGACTCGCACAGCACCGACTCACAGCACGAGCACTCAGTCGACCAA
CCCCAACAGCAGCCGCCGCCCCACGGTACGTTTCAGGACGCGGACGAGCA
CGAGTTACCCGAAGAGTTGTTCCACGCGCGCACGCGCGACACAGACCACA
CGTACAAACGCTTCGCACGAGTCGTGGCCGCCGCTCCACACCAGGTGATA
CGCTACGAGCGCGGCGGGGTTCCATTGTGGGGTGCGGCTGCGCGCCAGTG
CGAACAGCCGCCAACATGTGAGCGATGCGGCGCGGCACGCGTGTTCGAGC
TGCAACTTATGCCGCAGTTGTTGTACTTTGTGTGCGGTGCCGGACGCGTG
CGCACGGCGTGTGCGCGGCGAGACGCGGCAATtcagacgaagaagacgac
gacgaagaagacgacgacgaagaagacgcttgaattggacgatgacgatg
acattgatttggactgGCTCACCGTGTGTATCTTCTGCTGTGAGCGTAGC
TGTGGTGGCGACGCGCCGTACGTGCGCGAGTTTGCGTGGCTGCAGTCGGG
TGTCCCGCAGCATTGA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:2208815..2209630+

>Gchil1761.t1 ID=Gchil1761.t1|Name=Gchil1761.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00004403_pilon:2208815..2209630+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTGCCCGAGCTGCCGAGATGTTGTGTATTGCGGACGCGCGTGTCA
GCTTGTGCATTGGCGGAGTGACCACCATGCTCTCCCTgctgacgccgacg
ctgacgctgatgctgatgctggcgctggcgatgcttcgacgctgcgctTC
CGCGAGGTGCGCATCGTCACCGACGTGCACCCCGACGTATCCGATGATTC
CAGCAGCGCCGACTCGCACAGCGCCGACTCGCACAGCGCCGACTCGCACA
GCACCGACTCGCACAGCACCGACTCACAGCACGAGCACTCAGTCGACCAA
CCCCAACAGCAGCCGCCGCCCCACGGTACGTTTCAGGACGCGGACGAGCA
CGAGTTACCCGAAGAGTTGTTCCACGCGCGCACGCGCGACACAGACCACA
CGTACAAACGCTTCGCACGAGTCGTGGCCGCCGCTCCACACCAGGTGATA
CGCTACGAGCGCGGCGGGGTTCCATTGTGGGGTGCGGCTGCGCGCCAGTG
CGAACAGCCGCCAACATGTGAGCGATGCGGCGCGGCACGCGTGTTCGAGC
TGCAACTTATGCCGCAGTTGTTGTACTTTGTGTGCGGTGCCGGACGCGTG
CGCACGGCGTGTGCGCGGCGAGACGCGGCAATtcagacgaagaagacgac
gacgaagaagacgacgacgaagaagacgcttgaattggacgatgacgatg
acattgatttggactgGCTCACCGTGTGTATCTTCTGCTGTGAGCGTAGC
TGTGGTGGCGACGCGCCGTACGTGCGCGAGTTTGCGTGGCTGCAGTCGGG
TGTCCCGCAGCATTGA
back to top