Gchil1760.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1760.t1
Unique NameGchil1760.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2206980..2208038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMA041CT
Preferred nameUGE1
PFAMsGDP_Man_Dehyd
Max annot lvl2759|Eukaryota
KEGG rclassRC00289
KEGG koko:K01784
KEGG ReactionR00291,R02984
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00361,M00362,M00632
GOsGO:0000271,GO:0003674,GO:0003824,GO:0003978,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0006073,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009555,GO:0009653,GO:0009832,GO:0009888,GO:0009969,GO:0009987,GO:0010015,GO:0010053,GO:0010383,GO:0010410,GO:0010411,GO:0012505,GO:0016020,GO:0016051,GO:0016853,GO:0016854,GO:0016857,GO:0022622,GO:0030154,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0048869,GO:0050373,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0090558,GO:0090627,GO:0098791,GO:0099402,GO:1901576,GO:1905392
Evalue3.8e-160
EggNOG OGsCOG1087@1|root,KOG1371@2759|Eukaryota
EC5.1.3.2
Descriptionracemase and epimerase activity, acting on carbohydrates and derivatives
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1760Gchil1760Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2206980..2208038 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1760.t1.stop1Gchil1760.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2206980..2206982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1760.t1.CDS1Gchil1760.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2206980..2208038 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1760.t1.exon1Gchil1760.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2206980..2208038 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1760.t1.start1Gchil1760.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2208036..2208038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1760.t1Gchil1760.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2206980..2208038 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1760.t1 ID=Gchil1760.t1|Name=Gchil1760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=353bp
MATANDAENKTILVTGGAGYIGSHTVLELVSLGFTAVVVDNLDNSSEESL
LRVAQITNRAELIVFRKVDLLNFDDLEAVFKQFSFFACIHFAGLKAVGES
VKQPIRYYHNNLTGTLHLLNLLTKYKCKRFVFSSSATVYGLVKQMPVTEQ
VQIGATNPYGRTKLFIEEFLRDLQNADQSWNILILRYFNPCGAHSSGRIG
EDPTGIPNNLMPYVAQVAVRRRPHLTVFGNDYDTHDGTGVRDYIHVVDLA
KGHVAALNKLRDTNPGCISVNLGTGNGYSVLDMLNGMSKACGRKLPYEVA
PRRDGDVAVLYADPSFAQRFLGWTAKLGVDDMCADTWRWQSNNPNGYADS
DA*
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spliced messenger RNA

>Gchil1760.t1 ID=Gchil1760.t1|Name=Gchil1760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004403_pilon:2206980..2208038- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTGCCAACGACGCCGAAAACAAGACCATCCTGGTGACGGGCGG
CGCCGGCTACATCGGATCGCACACCGTGCTGGAGCTGGTGTCGCTCGGTT
TCACCGCCGTCGTGGTCGACAACCTGGACAACTCCTCCGAGGAGTCGCTG
TTGCGCGTGGCGCAGATCACCAACCGTGCCGAGCTCATCGTGTTCCGCAA
AGTGGATCTGCTCAATTTTGACGACCTCGAAGCCGTGTTCAAGCAGTTCA
GCTTCTTTGCGTGCATCCACTTCGCAGGGCTCAAGGCGGTGGGCGAGAGC
GTCAAGCAGCCCATCCGCTACTATCACAATAACCTCACCGGCACGCTGCA
CCTGCTCAACCTTCTCACCAAGTACAAGTGCAAGCGCTTTGTGTTCTCGT
CGTCGGCCACCGTGTACGGGCTGGTCAAACAAATGCCGGTGACGGAACAG
GTGCAGATCGGTGCCACCAATCCGTATGGTCGTACCAAGCTGTTCATCGA
GGAGTTTTTGCGCGATCTACAAAACGCAGATCAATCGTGGAACATACTCA
TCCTACGTTACTTCAACCCATGCGGGGCGCATAGCTCGGGGCGCATCGGC
GAGGATCCGACGGGCATTCCAAACAACCTGATGCCGTACGTGGCGCAGGT
GGCAGTGCGTCGTCGCCCGCATCTCACCGTGTTTGGAAACGACTACGACA
CGCACGACGGCACGGGCGTGCGCGATTACATCCACGTGGTGGATCTGGCC
AAGGGGCACGTGGCCGCACTCAACAAGCTGCGCGACACCAATCCCGGCTG
CATATCGGTCAATCTGGGCACGGGCAACGGCTACTCCGTGCTGGACATGC
TCAACGGCATGTCGAAGGCGTGCGGACGAAAGTTACCGTACGAGGTGGCA
CCGCGACGCGATGGTGATGTGGCCGTGTTGTACGCCGACCCCAGCTTTGC
GCAACGCTTCCTCGGCTGGACGGCCAAGCTGGGTGTGGACGACATGTGCG
CCGATACGTGGCGCTGGCAATCTAACAACCCCAACGGCTACGCCGACAGC
GACGCGTAG
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protein sequence of Gchil1760.t1

>Gchil1760.t1 ID=Gchil1760.t1|Name=Gchil1760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=353bp
MATANDAENKTILVTGGAGYIGSHTVLELVSLGFTAVVVDNLDNSSEESL
LRVAQITNRAELIVFRKVDLLNFDDLEAVFKQFSFFACIHFAGLKAVGES
VKQPIRYYHNNLTGTLHLLNLLTKYKCKRFVFSSSATVYGLVKQMPVTEQ
VQIGATNPYGRTKLFIEEFLRDLQNADQSWNILILRYFNPCGAHSSGRIG
EDPTGIPNNLMPYVAQVAVRRRPHLTVFGNDYDTHDGTGVRDYIHVVDLA
KGHVAALNKLRDTNPGCISVNLGTGNGYSVLDMLNGMSKACGRKLPYEVA
PRRDGDVAVLYADPSFAQRFLGWTAKLGVDDMCADTWRWQSNNPNGYADS
DA*
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mRNA from alignment at tig00004403_pilon:2206980..2208038-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1760.t1 ID=Gchil1760.t1|Name=Gchil1760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004403_pilon:2206980..2208038- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACTGCCAACGACGCCGAAAACAAGACCATCCTGGTGACGGGCGG
CGCCGGCTACATCGGATCGCACACCGTGCTGGAGCTGGTGTCGCTCGGTT
TCACCGCCGTCGTGGTCGACAACCTGGACAACTCCTCCGAGGAGTCGCTG
TTGCGCGTGGCGCAGATCACCAACCGTGCCGAGCTCATCGTGTTCCGCAA
AGTGGATCTGCTCAATTTTGACGACCTCGAAGCCGTGTTCAAGCAGTTCA
GCTTCTTTGCGTGCATCCACTTCGCAGGGCTCAAGGCGGTGGGCGAGAGC
GTCAAGCAGCCCATCCGCTACTATCACAATAACCTCACCGGCACGCTGCA
CCTGCTCAACCTTCTCACCAAGTACAAGTGCAAGCGCTTTGTGTTCTCGT
CGTCGGCCACCGTGTACGGGCTGGTCAAACAAATGCCGGTGACGGAACAG
GTGCAGATCGGTGCCACCAATCCGTATGGTCGTACCAAGCTGTTCATCGA
GGAGTTTTTGCGCGATCTACAAAACGCAGATCAATCGTGGAACATACTCA
TCCTACGTTACTTCAACCCATGCGGGGCGCATAGCTCGGGGCGCATCGGC
GAGGATCCGACGGGCATTCCAAACAACCTGATGCCGTACGTGGCGCAGGT
GGCAGTGCGTCGTCGCCCGCATCTCACCGTGTTTGGAAACGACTACGACA
CGCACGACGGCACGGGCGTGCGCGATTACATCCACGTGGTGGATCTGGCC
AAGGGGCACGTGGCCGCACTCAACAAGCTGCGCGACACCAATCCCGGCTG
CATATCGGTCAATCTGGGCACGGGCAACGGCTACTCCGTGCTGGACATGC
TCAACGGCATGTCGAAGGCGTGCGGACGAAAGTTACCGTACGAGGTGGCA
CCGCGACGCGATGGTGATGTGGCCGTGTTGTACGCCGACCCCAGCTTTGC
GCAACGCTTCCTCGGCTGGACGGCCAAGCTGGGTGTGGACGACATGTGCG
CCGATACGTGGCGCTGGCAATCTAACAACCCCAACGGCTACGCCGACAGC
GACGCGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:2206980..2208038-

>Gchil1760.t1 ID=Gchil1760.t1|Name=Gchil1760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00004403_pilon:2206980..2208038- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACTGCCAACGACGCCGAAAACAAGACCATCCTGGTGACGGGCGG
CGCCGGCTACATCGGATCGCACACCGTGCTGGAGCTGGTGTCGCTCGGTT
TCACCGCCGTCGTGGTCGACAACCTGGACAACTCCTCCGAGGAGTCGCTG
TTGCGCGTGGCGCAGATCACCAACCGTGCCGAGCTCATCGTGTTCCGCAA
AGTGGATCTGCTCAATTTTGACGACCTCGAAGCCGTGTTCAAGCAGTTCA
GCTTCTTTGCGTGCATCCACTTCGCAGGGCTCAAGGCGGTGGGCGAGAGC
GTCAAGCAGCCCATCCGCTACTATCACAATAACCTCACCGGCACGCTGCA
CCTGCTCAACCTTCTCACCAAGTACAAGTGCAAGCGCTTTGTGTTCTCGT
CGTCGGCCACCGTGTACGGGCTGGTCAAACAAATGCCGGTGACGGAACAG
GTGCAGATCGGTGCCACCAATCCGTATGGTCGTACCAAGCTGTTCATCGA
GGAGTTTTTGCGCGATCTACAAAACGCAGATCAATCGTGGAACATACTCA
TCCTACGTTACTTCAACCCATGCGGGGCGCATAGCTCGGGGCGCATCGGC
GAGGATCCGACGGGCATTCCAAACAACCTGATGCCGTACGTGGCGCAGGT
GGCAGTGCGTCGTCGCCCGCATCTCACCGTGTTTGGAAACGACTACGACA
CGCACGACGGCACGGGCGTGCGCGATTACATCCACGTGGTGGATCTGGCC
AAGGGGCACGTGGCCGCACTCAACAAGCTGCGCGACACCAATCCCGGCTG
CATATCGGTCAATCTGGGCACGGGCAACGGCTACTCCGTGCTGGACATGC
TCAACGGCATGTCGAAGGCGTGCGGACGAAAGTTACCGTACGAGGTGGCA
CCGCGACGCGATGGTGATGTGGCCGTGTTGTACGCCGACCCCAGCTTTGC
GCAACGCTTCCTCGGCTGGACGGCCAAGCTGGGTGTGGACGACATGTGCG
CCGATACGTGGCGCTGGCAATCTAACAACCCCAACGGCTACGCCGACAGC
GACGCGTAG
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