Gchil1758.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1758.t1
Unique Name	Gchil1758.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	363

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2203222..2204310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S55_140V6.1
PFAMs	Epimerase
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009719,GO:0009725,GO:0009735,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010033,GO:0010287,GO:0010319,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032268,GO:0032270,GO:0032544,GO:0032991,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0048046,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Evalue	1.47e-60
EggNOG OGs	28N8Y@1\|root,2QUUA@2759\|Eukaryota,37I9Y@33090\|Viridiplantae,3G980@35493\|Streptophyta
Description	Chloroplast stem-loop binding protein of 41 kDa
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1758	Gchil1758	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2203222..2204310 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1758.t1.start1	Gchil1758.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2203222..2203224 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1758.t1.CDS1	Gchil1758.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2203222..2204310 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1758.t1.exon1	Gchil1758.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2203222..2204310 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1758.t1.stop1	Gchil1758.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2204308..2204310 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1758.t1	Gchil1758.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2203222..2204310 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2203222..2204310+
coding sequence from alignment at tig00004403_pilon:2203222..2204310+

mRNA sequence

>Gchil1758.t1 ID=Gchil1758.t1|Name=Gchil1758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MFAFASSTFVHKRALPNSASISTRPQHAPHRTCSMCSKVLIVNTKGGGHG
HIGLHLARALLEKGLTVDMLQVGKQTSNGPVGKYPQLASEFSSFSVRYGH
VTHESVGSGYDAVFDNNAKSVEEIAPIIKAGKDGAEVFYVSSAGAYKYDP
NVAPHLVGDAANGPTIDVENALRESGVSCVNFRPTYIIGSASSKREYTDF
FFDRIVRHRPIPLPGSGTELTCLTDVRDVASMLAAAVGKGLKNETMNMVN
TRCISFDGIVRMCEKVCGKEAKVVYYDAEDMKAKIEGFQVKKAFPFRPRH
FFADPLEAQVKLGWHPHFSGTSEGLMKTLQLCYDEYLQLGLDKADVSFTV
DEQVLEHVAAAA*

spliced messenger RNA

>Gchil1758.t1 ID=Gchil1758.t1|Name=Gchil1758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004403_pilon:2203222..2204310+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTTCGCCTCATCCACTTTTGTCCACAAGCGCGCGCTGCCGAA
CAGCGCATCGATAAGCACGCGGCCGCAACATGCACCTCATCGTACGTGCT
CAATGTGTTCCAAGGTGCTCATCGTGAACACCAAAGGCGGCGGTCACGGT
CACATCGGTCTACATCTTGCGCGCGCATTGCTGGAAAAGGGCTTGACGGT
TGATATGCTGCAGGTTGGAAAACAAACTTCCAACGGTCCAGTTGGCAAAT
ATCCGCAGCTCGCGTCAGAATTTTCCTCCTTCTCCGTTCGCTATGGCCAT
GTCACACACGAATCCGTGGGCAGTGGCTATGACGCAGTGTTTGATAACAA
TGCCAAATCTGTCGAAGAAATCGCCCCGATTATCAAAGCAGGAAAGGATG
GTGCGGAGGTGTTCTACGTCTCCAGCGCTGGCGCGTACAAGTACGACCCG
AATGTGGCGCCACACTTGGTTGGTGACGCGGCAAACGGCCCCACTATCGA
CGTAGAGAACGCCCTTCGGGAAAGTGGCGTAAGTTGTGTAAACTTTCGAC
CCACTTATATCATTGGCTCTGCCAGTTCAAAGAGAGAGTACACTGATTTC
TTTTTCGACAGAATTGTGCGTCACAGACCAATTCCACTGCCGGGGTCTGG
AACTGAGCTCACATGTCTGACCGACGTGCGCGACGTGGCGTCCATGCTGG
CGGCGGCGGTGGGAAAGGGGTTGAAGAACGAGACAATGAACATGGTCAAC
ACGCGATGCATCTCGTTTGACGGCATCGTGAGGATGTGCGAGAAAGTGTG
TGGTAAGGAGGCAAAAGTAGTGTACTACGACGCCGAAGATATGAAAGCCA
AAATAGAGGGCTTCCAAGTGAAGAAAGCGTTTCCGTTCCGCCCGCGCCAC
TTTTTCGCGGATCCACTTGAAGCACAGGTCAAACTGGGTTGGCACCCGCA
CTTTTCGGGTACCAGCGAGGGGCTGATGAAAACGCTTCAGCTCTGTTACG
ACGAGTATTTACAGCTGGGGCTTGACAAGGCAGACGTGTCGTTCACCGTG
GATGAGCAGGTTTTGGAGCACGTTGCGGCGGCGGCCTAA

protein sequence of Gchil1758.t1

>Gchil1758.t1 ID=Gchil1758.t1|Name=Gchil1758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MFAFASSTFVHKRALPNSASISTRPQHAPHRTCSMCSKVLIVNTKGGGHG
HIGLHLARALLEKGLTVDMLQVGKQTSNGPVGKYPQLASEFSSFSVRYGH
VTHESVGSGYDAVFDNNAKSVEEIAPIIKAGKDGAEVFYVSSAGAYKYDP
NVAPHLVGDAANGPTIDVENALRESGVSCVNFRPTYIIGSASSKREYTDF
FFDRIVRHRPIPLPGSGTELTCLTDVRDVASMLAAAVGKGLKNETMNMVN
TRCISFDGIVRMCEKVCGKEAKVVYYDAEDMKAKIEGFQVKKAFPFRPRH
FFADPLEAQVKLGWHPHFSGTSEGLMKTLQLCYDEYLQLGLDKADVSFTV
DEQVLEHVAAAA*

mRNA from alignment at tig00004403_pilon:2203222..2204310+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1758.t1 ID=Gchil1758.t1|Name=Gchil1758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004403_pilon:2203222..2204310+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGCCTTCGCCTCATCCACTTTTGTCCACAAGCGCGCGCTGCCGAA
CAGCGCATCGATAAGCACGCGGCCGCAACATGCACCTCATCGTACGTGCT
CAATGTGTTCCAAGGTGCTCATCGTGAACACCAAAGGCGGCGGTCACGGT
CACATCGGTCTACATCTTGCGCGCGCATTGCTGGAAAAGGGCTTGACGGT
TGATATGCTGCAGGTTGGAAAACAAACTTCCAACGGTCCAGTTGGCAAAT
ATCCGCAGCTCGCGTCAGAATTTTCCTCCTTCTCCGTTCGCTATGGCCAT
GTCACACACGAATCCGTGGGCAGTGGCTATGACGCAGTGTTTGATAACAA
TGCCAAATCTGTCGAAGAAATCGCCCCGATTATCAAAGCAGGAAAGGATG
GTGCGGAGGTGTTCTACGTCTCCAGCGCTGGCGCGTACAAGTACGACCCG
AATGTGGCGCCACACTTGGTTGGTGACGCGGCAAACGGCCCCACTATCGA
CGTAGAGAACGCCCTTCGGGAAAGTGGCGTAAGTTGTGTAAACTTTCGAC
CCACTTATATCATTGGCTCTGCCAGTTCAAAGAGAGAGTACACTGATTTC
TTTTTCGACAGAATTGTGCGTCACAGACCAATTCCACTGCCGGGGTCTGG
AACTGAGCTCACATGTCTGACCGACGTGCGCGACGTGGCGTCCATGCTGG
CGGCGGCGGTGGGAAAGGGGTTGAAGAACGAGACAATGAACATGGTCAAC
ACGCGATGCATCTCGTTTGACGGCATCGTGAGGATGTGCGAGAAAGTGTG
TGGTAAGGAGGCAAAAGTAGTGTACTACGACGCCGAAGATATGAAAGCCA
AAATAGAGGGCTTCCAAGTGAAGAAAGCGTTTCCGTTCCGCCCGCGCCAC
TTTTTCGCGGATCCACTTGAAGCACAGGTCAAACTGGGTTGGCACCCGCA
CTTTTCGGGTACCAGCGAGGGGCTGATGAAAACGCTTCAGCTCTGTTACG
ACGAGTATTTACAGCTGGGGCTTGACAAGGCAGACGTGTCGTTCACCGTG
GATGAGCAGGTTTTGGAGCACGTTGCGGCGGCGGCCTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:2203222..2204310+

>Gchil1758.t1 ID=Gchil1758.t1|Name=Gchil1758.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00004403_pilon:2203222..2204310+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGCCTTCGCCTCATCCACTTTTGTCCACAAGCGCGCGCTGCCGAA
CAGCGCATCGATAAGCACGCGGCCGCAACATGCACCTCATCGTACGTGCT
CAATGTGTTCCAAGGTGCTCATCGTGAACACCAAAGGCGGCGGTCACGGT
CACATCGGTCTACATCTTGCGCGCGCATTGCTGGAAAAGGGCTTGACGGT
TGATATGCTGCAGGTTGGAAAACAAACTTCCAACGGTCCAGTTGGCAAAT
ATCCGCAGCTCGCGTCAGAATTTTCCTCCTTCTCCGTTCGCTATGGCCAT
GTCACACACGAATCCGTGGGCAGTGGCTATGACGCAGTGTTTGATAACAA
TGCCAAATCTGTCGAAGAAATCGCCCCGATTATCAAAGCAGGAAAGGATG
GTGCGGAGGTGTTCTACGTCTCCAGCGCTGGCGCGTACAAGTACGACCCG
AATGTGGCGCCACACTTGGTTGGTGACGCGGCAAACGGCCCCACTATCGA
CGTAGAGAACGCCCTTCGGGAAAGTGGCGTAAGTTGTGTAAACTTTCGAC
CCACTTATATCATTGGCTCTGCCAGTTCAAAGAGAGAGTACACTGATTTC
TTTTTCGACAGAATTGTGCGTCACAGACCAATTCCACTGCCGGGGTCTGG
AACTGAGCTCACATGTCTGACCGACGTGCGCGACGTGGCGTCCATGCTGG
CGGCGGCGGTGGGAAAGGGGTTGAAGAACGAGACAATGAACATGGTCAAC
ACGCGATGCATCTCGTTTGACGGCATCGTGAGGATGTGCGAGAAAGTGTG
TGGTAAGGAGGCAAAAGTAGTGTACTACGACGCCGAAGATATGAAAGCCA
AAATAGAGGGCTTCCAAGTGAAGAAAGCGTTTCCGTTCCGCCCGCGCCAC
TTTTTCGCGGATCCACTTGAAGCACAGGTCAAACTGGGTTGGCACCCGCA
CTTTTCGGGTACCAGCGAGGGGCTGATGAAAACGCTTCAGCTCTGTTACG
ACGAGTATTTACAGCTGGGGCTTGACAAGGCAGACGTGTCGTTCACCGTG
GATGAGCAGGTTTTGGAGCACGTTGCGGCGGCGGCCTAA