Gchil1756.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1756.t1
Unique NameGchil1756.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2201472..2202347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1756Gchil1756Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2201472..2202347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1756.t1Gchil1756.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2201472..2202347 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1756.t1.start1Gchil1756.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2201472..2201474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1756.t1.CDS1Gchil1756.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2201472..2202116 +
Gchil1756.t1.CDS2Gchil1756.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2202261..2202347 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1756.t1.exon1Gchil1756.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2201472..2202116 +
Gchil1756.t1.exon2Gchil1756.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2202261..2202347 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1756.t1.intron1Gchil1756.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 2202117..2202260 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1756.t1.stop1Gchil1756.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2202345..2202347 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1756.t1 ID=Gchil1756.t1|Name=Gchil1756.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=244bp
MQLPLDHQHLIARKPCGKSHFSDLFRIAVELSKMTSKPRRAMNESAALVA
RRTQSERDALRRRQKEKKARIVKKHVHYKQKKKLLSQLAASEKDAPIVAP
ELGGIDADAEDQPKEERTEGKGSTANEPSALPTQNKGEGKKTPEKLKQTK
SGKKANGNSAESETGSKTKYTPFAKEMKEFEEAKRKQAQQQKERVEKIKE
REAMLKNSKKNRNKQSKQYRAKTHRGQPKMKHRVNALLARIEK*
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spliced messenger RNA

>Gchil1756.t1 ID=Gchil1756.t1|Name=Gchil1756.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00004403_pilon:2201472..2202347+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTGCCTCTTGATCATCAGCATTTGATCGCTCGCAAGCCATGCGG
CAAGAGTCACTTCTCTGACTTGTTTCGAATCGCAGTTGAGCTTTCAAAAA
TGACTTCAAAGCCTCGTCGAGCGATGAATGAATCAGCAGCCCTGGTTGCC
CGTCGAACGCAGTCCGAGCGAGACGCTCTGCGACGCCGACAAAAAGAGAA
AAAAGCTCGTATCGTGAAGAAACATGTGCACTACAAACAAAAGAAGAAGC
TGCTCTCTCAATTGGCCGCATCTGAAAAAGATGCGCCCATAGTGGCCCCG
GAGCTGGGCGGAATAGACGCTGATGCAGAGGATCAGCCTAAGGAAGAGCG
AACAGAAGGGAAAGGAAGCACAGCAAATGAGCCATCTGCACTGCCCACAC
AGAATAAAGGGGAGGGAAAGAAGACGCCTGAAAAGTTGAAGCAAACAAAG
TCAGGGAAGAAGGCCAATGGTAACAGTGCAGAGAGCGAAACGGGAAGCAA
AACTAAATATACTCCATTTGCCAAGGAGATGAAAGAGTTTGAAGAAGCAA
AGAGGAAACAAGCGCAGCAGCAAAAGGAACGTGTGGAAAAAATCAAAGAA
AGGGAGGCAATGTTGAAAAACTCCAAGAAGAATAGAAACAAACAGTCAAA
GCAATATCGGGCGAAAACGCACAGGGGCCAGCCGAAAATGAAACATCGTG
TTAACGCATTATTGGCTCGTATTGAAAAGTAA
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protein sequence of Gchil1756.t1

>Gchil1756.t1 ID=Gchil1756.t1|Name=Gchil1756.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=244bp
MQLPLDHQHLIARKPCGKSHFSDLFRIAVELSKMTSKPRRAMNESAALVA
RRTQSERDALRRRQKEKKARIVKKHVHYKQKKKLLSQLAASEKDAPIVAP
ELGGIDADAEDQPKEERTEGKGSTANEPSALPTQNKGEGKKTPEKLKQTK
SGKKANGNSAESETGSKTKYTPFAKEMKEFEEAKRKQAQQQKERVEKIKE
REAMLKNSKKNRNKQSKQYRAKTHRGQPKMKHRVNALLARIEK*
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mRNA from alignment at tig00004403_pilon:2201472..2202347+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1756.t1 ID=Gchil1756.t1|Name=Gchil1756.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004403_pilon:2201472..2202347+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATTGCCTCTTGATCATCAGCATTTGATCGCTCGCAAGCCATGCGG
CAAGAGTCACTTCTCTGACTTGTTTCGAATCGCAGTTGAGCTTTCAAAAA
TGACTTCAAAGCCTCGTCGAGCGATGAATGAATCAGCAGCCCTGGTTGCC
CGTCGAACGCAGTCCGAGCGAGACGCTCTGCGACGCCGACAAAAAGAGAA
AAAAGCTCGTATCGTGAAGAAACATGTGCACTACAAACAAAAGAAGAAGC
TGCTCTCTCAATTGGCCGCATCTGAAAAAGATGCGCCCATAGTGGCCCCG
GAGCTGGGCGGAATAGACGCTGATGCAGAGGATCAGCCTAAGGAAGAGCG
AACAGAAGGGAAAGGAAGCACAGCAAATGAGCCATCTGCACTGCCCACAC
AGAATAAAGGGGAGGGAAAGAAGACGCCTGAAAAGTTGAAGCAAACAAAG
TCAGGGAAGAAGGCCAATGGTAACAGTGCAGAGAGCGAAACGGGAAGCAA
AACTAAATATACTCCATTTGCCAAGGAGATGAAAGAGTTTGAAGAAGCAA
AGAGGAAACAAGCGCAGCAGCAAAAGGAACGTGTGGAAAAAATCAAAGAA
AGGGAGGCAATGTTGAAAAACTCCAAGAAGAATAGAAACAAACAGGTGCG
TGTACTGGTGACATGTGTTACAAACGATTTACGCAGCAAAGTTGTAGGGC
GTAAAGCACAGCTCCGACGATTAAGGCGCGTAATAGAGACTAACTCTCCA
AGTACCTCCCGTTGCGTTTCATTTGGTTTCTTGTAACAGTCAAAGCAATA
TCGGGCGAAAACGCACAGGGGCCAGCCGAAAATGAAACATCGTGTTAACG
CATTATTGGCTCGTATTGAAAAGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2201472..2202347+

>Gchil1756.t1 ID=Gchil1756.t1|Name=Gchil1756.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00004403_pilon:2201472..2202347+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATTGCCTCTTGATCATCAGCATTTGATCGCTCGCAAGCCATGCGG
CAAGAGTCACTTCTCTGACTTGTTTCGAATCGCAGTTGAGCTTTCAAAAA
TGACTTCAAAGCCTCGTCGAGCGATGAATGAATCAGCAGCCCTGGTTGCC
CGTCGAACGCAGTCCGAGCGAGACGCTCTGCGACGCCGACAAAAAGAGAA
AAAAGCTCGTATCGTGAAGAAACATGTGCACTACAAACAAAAGAAGAAGC
TGCTCTCTCAATTGGCCGCATCTGAAAAAGATGCGCCCATAGTGGCCCCG
GAGCTGGGCGGAATAGACGCTGATGCAGAGGATCAGCCTAAGGAAGAGCG
AACAGAAGGGAAAGGAAGCACAGCAAATGAGCCATCTGCACTGCCCACAC
AGAATAAAGGGGAGGGAAAGAAGACGCCTGAAAAGTTGAAGCAAACAAAG
TCAGGGAAGAAGGCCAATGGTAACAGTGCAGAGAGCGAAACGGGAAGCAA
AACTAAATATACTCCATTTGCCAAGGAGATGAAAGAGTTTGAAGAAGCAA
AGAGGAAACAAGCGCAGCAGCAAAAGGAACGTGTGGAAAAAATCAAAGAA
AGGGAGGCAATGTTGAAAAACTCCAAGAAGAATAGAAACAAACAGTCAAA
GCAATATCGGGCGAAAACGCACAGGGGCCAGCCGAAAATGAAACATCGTG
TTAACGCATTATTGGCTCGTATTGAAAAGTAA
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