Gchil1742.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1742.t1
Unique NameGchil1742.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:2082576..2083343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008607209.1
Preferred nameUBR7
PFAMszf-UBR
Max annot lvl2759|Eukaryota
KEGG koko:K11979,ko:K16261
KEGG TC2.A.3.10
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0048285,GO:0051276,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0071840,GO:0098813,GO:0140014,GO:0140096,GO:1901564,GO:1903047
Evalue3.86e-10
EggNOG OGsKOG2752@1|root,KOG2752@2759|Eukaryota
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase
COG categoryS
BRITEko00000,ko01000,ko02000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1742Gchil1742Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 2082576..2083343 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1742.t1.stop1Gchil1742.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 2082576..2082578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1742.t1.CDS1Gchil1742.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 2082576..2083343 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1742.t1.exon1Gchil1742.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 2082576..2083343 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1742.t1.start1Gchil1742.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 2083341..2083343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1742.t1Gchil1742.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 2082576..2083343 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1742.t1 ID=Gchil1742.t1|Name=Gchil1742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=256bp
MTQCAICEDWFHEKCYILDGLARKRSTQFDMEYELTCKDCVKKVSVLAEY
YEILNVWKKKGYIKKPMGERCFRPKNISVSTKAGSLDYMWRPGFRSYLCR
CQDCMELYKSNDVFYLVDRNDFVSPASEDEDSEDYGVEDIENAVEDGGDE
ILELEEVSEPGSPAPKVFDKDERIPRKPRVQNKARPPKTPLREPTRVGQK
NEPLGVHEIMNIRKRITDFLREAIQTNGGNINRSILLSYMTELKAELLSD
RAETL*
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spliced messenger RNA

>Gchil1742.t1 ID=Gchil1742.t1|Name=Gchil1742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00004403_pilon:2082576..2083343- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAGTGCGCGATATGTGAGGACTGGTTTCATGAGAAATGTTATAT
CCTCGATGGTCTCGCTCGGAAGCGATCAACCCAGTTTGATATGGAGTATG
AGCTAACTTGCAAGGATTGCGTGAAAAAGGTGTCTGTATTAGCGGAGTAT
TACGAAATATTAAACGTTTGGAAGAAGAAGGGGTATATTAAGAAACCTAT
GGGGGAAAGATGTTTTCGCCCTAAGAACATCAGCGTTTCAACGAAAGCAG
GAAGTCTAGATTATATGTGGCGCCCCGGTTTCCGCTCTTACCTCTGCAGA
TGCCAAGATTGTATGGAACTTTACAAATCAAACGATGTGTTTTACTTAGT
GGATAGAAATGATTTCGTTTCACCTGCCTCCGAGGATGAAGACAGTGAGG
ATTATGGGGTTGAAGACATTGAAAATGCAGTTGAGGATGGTGGAGACGAA
ATCTTAGAGCTTGAGGAGGTCAGTGAGCCCGGGTCACCTGCTCCAAAGGT
ATTTGATAAGGATGAGCGTATTCCGCGGAAACCTCGTGTTCAAAACAAAG
CTCGTCCACCGAAGACACCTCTCAGGGAGCCTACGAGGGTAGGGCAGAAA
AATGAACCCCTTGGAGTGCACGAAATCATGAACATCCGGAAAAGGATTAC
AGATTTTCTTCGAGAAGCGATTCAGACGAACGGAGGGAACATAAACCGCA
GCATTCTCCTATCGTATATGACAGAACTGAAGGCAGAATTACTCTCTGAT
CGCGCGGAGACATTGTGA
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protein sequence of Gchil1742.t1

>Gchil1742.t1 ID=Gchil1742.t1|Name=Gchil1742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=256bp
MTQCAICEDWFHEKCYILDGLARKRSTQFDMEYELTCKDCVKKVSVLAEY
YEILNVWKKKGYIKKPMGERCFRPKNISVSTKAGSLDYMWRPGFRSYLCR
CQDCMELYKSNDVFYLVDRNDFVSPASEDEDSEDYGVEDIENAVEDGGDE
ILELEEVSEPGSPAPKVFDKDERIPRKPRVQNKARPPKTPLREPTRVGQK
NEPLGVHEIMNIRKRITDFLREAIQTNGGNINRSILLSYMTELKAELLSD
RAETL*
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mRNA from alignment at tig00004403_pilon:2082576..2083343-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1742.t1 ID=Gchil1742.t1|Name=Gchil1742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp|location=Sequence derived from alignment at tig00004403_pilon:2082576..2083343- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCAGTGCGCGATATGTGAGGACTGGTTTCATGAGAAATGTTATAT
CCTCGATGGTCTCGCTCGGAAGCGATCAACCCAGTTTGATATGGAGTATG
AGCTAACTTGCAAGGATTGCGTGAAAAAGGTGTCTGTATTAGCGGAGTAT
TACGAAATATTAAACGTTTGGAAGAAGAAGGGGTATATTAAGAAACCTAT
GGGGGAAAGATGTTTTCGCCCTAAGAACATCAGCGTTTCAACGAAAGCAG
GAAGTCTAGATTATATGTGGCGCCCCGGTTTCCGCTCTTACCTCTGCAGA
TGCCAAGATTGTATGGAACTTTACAAATCAAACGATGTGTTTTACTTAGT
GGATAGAAATGATTTCGTTTCACCTGCCTCCGAGGATGAAGACAGTGAGG
ATTATGGGGTTGAAGACATTGAAAATGCAGTTGAGGATGGTGGAGACGAA
ATCTTAGAGCTTGAGGAGGTCAGTGAGCCCGGGTCACCTGCTCCAAAGGT
ATTTGATAAGGATGAGCGTATTCCGCGGAAACCTCGTGTTCAAAACAAAG
CTCGTCCACCGAAGACACCTCTCAGGGAGCCTACGAGGGTAGGGCAGAAA
AATGAACCCCTTGGAGTGCACGAAATCATGAACATCCGGAAAAGGATTAC
AGATTTTCTTCGAGAAGCGATTCAGACGAACGGAGGGAACATAAACCGCA
GCATTCTCCTATCGTATATGACAGAACTGAAGGCAGAATTACTCTCTGAT
CGCGCGGAGACATTGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:2082576..2083343-

>Gchil1742.t1 ID=Gchil1742.t1|Name=Gchil1742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=768bp|location=Sequence derived from alignment at tig00004403_pilon:2082576..2083343- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCAGTGCGCGATATGTGAGGACTGGTTTCATGAGAAATGTTATAT
CCTCGATGGTCTCGCTCGGAAGCGATCAACCCAGTTTGATATGGAGTATG
AGCTAACTTGCAAGGATTGCGTGAAAAAGGTGTCTGTATTAGCGGAGTAT
TACGAAATATTAAACGTTTGGAAGAAGAAGGGGTATATTAAGAAACCTAT
GGGGGAAAGATGTTTTCGCCCTAAGAACATCAGCGTTTCAACGAAAGCAG
GAAGTCTAGATTATATGTGGCGCCCCGGTTTCCGCTCTTACCTCTGCAGA
TGCCAAGATTGTATGGAACTTTACAAATCAAACGATGTGTTTTACTTAGT
GGATAGAAATGATTTCGTTTCACCTGCCTCCGAGGATGAAGACAGTGAGG
ATTATGGGGTTGAAGACATTGAAAATGCAGTTGAGGATGGTGGAGACGAA
ATCTTAGAGCTTGAGGAGGTCAGTGAGCCCGGGTCACCTGCTCCAAAGGT
ATTTGATAAGGATGAGCGTATTCCGCGGAAACCTCGTGTTCAAAACAAAG
CTCGTCCACCGAAGACACCTCTCAGGGAGCCTACGAGGGTAGGGCAGAAA
AATGAACCCCTTGGAGTGCACGAAATCATGAACATCCGGAAAAGGATTAC
AGATTTTCTTCGAGAAGCGATTCAGACGAACGGAGGGAACATAAACCGCA
GCATTCTCCTATCGTATATGACAGAACTGAAGGCAGAATTACTCTCTGAT
CGCGCGGAGACATTGTGA
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