Gchil1733.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1733.t1
Unique Name	Gchil1733.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:2008435..2010075 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8090.ENSORLP00000015604
PFAMs	DNA_photolyase,FAD_binding_7
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K02295
KEGG Pathway	ko04710,map04710
GOs	GO:0003674,GO:0003824,GO:0003904,GO:0003913,GO:0016829,GO:0016830,GO:0140097
Evalue	9.65e-146
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota,38BKX@33154\|Opisthokonta,3B995@33208\|Metazoa,3CXCK@33213\|Bilateria,48BKK@7711\|Chordata,499WT@7742\|Vertebrata,4A0N0@7898\|Actinopterygii
Description	Cryptochrome 5
COG category	LT
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1733	Gchil1733	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 2008435..2010075 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1733.t1.start1	Gchil1733.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 2008435..2008437 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1733.t1.CDS1	Gchil1733.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 2008435..2010075 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1733.t1.exon1	Gchil1733.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 2008435..2010075 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1733.t1.stop1	Gchil1733.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 2010073..2010075 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1733.t1	Gchil1733.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 2008435..2010075 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:2008435..2010075+
coding sequence from alignment at tig00004403_pilon:2008435..2010075+

mRNA sequence

>Gchil1733.t1 ID=Gchil1733.t1|Name=Gchil1733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=547bp
MKNGIAYVTASECVLHWFRRDLRLTDNLALNAAVRLARCTKCPLIPLYIL
DPSLDPENCSAVRMRFLRESVCNLQSNLLEHDLHLRVVTGNANEVLPQLA
RRWNAKNVFWEREYAPEPRKRDELIRSDLLTLDIHVNTFPGFLLYDPDEL
LKHCDGVAPRNMNSMFNLLDRVGEPQKPKKFADGDTVSLVEDPFVSRDKT
ENMFDIPSFTELGYEDVKGQWTIFKGGEDEGLRRMENFLRRKNGRTAANF
SKPKTSPAAFSPRETTVLSPYLALGCVSCRSFFSKLREIEQRHKLNEMRQ
TTLVGQLTWREHFWLLAYTVENFHQMTGNVVCRQISWRKDEESLKLLKCW
AQARTGFPWIDALMTQLQKEGFVHHLGRHSLACFLTRGDLWISWEEGFKV
FEKYLMDYDYALNSANWMWLSCSAFFVMYYRVYSPIAFGKKWDKDGAFIR
RYLPVLKNMPSKYIYEPWKAPETVQRKAGCIIGKDYPEPMVDHAKASKEN
IEKMKKDYAKKEFGKLKQIKDASESEKNGRTPRTSDDRPRRKRRRL*

spliced messenger RNA

>Gchil1733.t1 ID=Gchil1733.t1|Name=Gchil1733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00004403_pilon:2008435..2010075+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAACGGAATCGCTTATGTAACGGCATCGGAATGTGTTTTACACTG
GTTTCGAAGGGATCTCCGCCTCACTGACAATCTTGCCTTAAATGCGGCAG
TTAGACTTGCGAGGTGCACCAAATGTCCGCTCATTCCTCTCTACATCTTG
GATCCATCTCTAGACCCGGAGAACTGCAGTGCAGTTCGAATGCGGTTTTT
GCGCGAGTCTGTGTGCAACCTACAATCAAACCTGTTGGAACACGATCTTC
ATCTCAGAGTAGTAACCGGTAATGCCAATGAAGTCTTGCCTCAGCTCGCT
CGGCGCTGGAATGCGAAAAATGTATTCTGGGAGAGGGAGTACGCGCCCGA
ACCACGAAAGAGAGATGAACTTATCAGGTCTGATCTTTTAACGCTCGATA
TTCACGTGAATACATTTCCCGGGTTTCTTCTGTACGATCCTGATGAGCTT
CTCAAACACTGTGATGGAGTTGCCCCAAGAAATATGAACAGTATGTTCAA
TCTTTTGGATCGCGTGGGAGAACCGCAGAAGCCGAAGAAATTTGCCGATG
GGGACACCGTGAGTCTTGTGGAAGATCCCTTTGTTTCTAGAGATAAAACT
GAAAATATGTTCGACATTCCGTCTTTCACAGAACTTGGATATGAAGACGT
GAAAGGTCAATGGACGATTTTCAAAGGGGGAGAGGATGAGGGCTTGCGGC
GGATGGAAAATTTCTTGCGGCGGAAGAACGGCCGTACCGCTGCCAACTTC
TCAAAACCTAAAACTAGTCCAGCCGCTTTTTCTCCTCGAGAGACCACTGT
CTTATCGCCCTATCTGGCTCTTGGATGTGTCAGTTGTCGGTCATTCTTCT
CTAAATTGCGAGAGATTGAGCAACGTCACAAGCTGAATGAGATGCGTCAA
ACTACTTTGGTGGGGCAGCTCACATGGCGGGAACACTTTTGGCTATTGGC
TTACACAGTTGAGAATTTCCACCAGATGACAGGCAACGTTGTGTGTAGAC
AGATTAGTTGGCGCAAGGACGAAGAATCATTGAAGTTACTCAAATGCTGG
GCTCAAGCCCGAACGGGATTTCCTTGGATTGACGCTTTGATGACTCAATT
GCAGAAAGAGGGTTTCGTTCATCACCTAGGAAGACATAGTTTGGCCTGTT
TTTTAACAAGAGGCGATCTGTGGATCAGCTGGGAAGAAGGCTTCAAAGTC
TTTGAAAAGTATCTGATGGATTACGACTACGCCCTGAATTCTGCGAATTG
GATGTGGCTCAGCTGCAGTGCATTTTTTGTCATGTACTACCGCGTTTACT
CACCAATTGCGTTTGGAAAAAAGTGGGATAAAGATGGGGCATTCATTCGA
CGATACCTTCCCGTGCTGAAAAATATGCCATCGAAGTATATCTACGAACC
GTGGAAAGCGCCGGAAACTGTGCAAAGGAAAGCCGGTTGTATCATTGGAA
AAGACTACCCAGAGCCCATGGTCGATCATGCCAAGGCAAGCAAGGAAAAT
ATAGAGAAAATGAAGAAGGATTATGCGAAGAAGGAGTTCGGTAAACTGAA
ACAAATCAAAGACGCGTCTGAATCGGAGAAAAACGGTCGCACACCTCGAA
CAAGTGATGATCGTCCACGCAGGAAAAGAAGACGGCTCTGA

protein sequence of Gchil1733.t1

>Gchil1733.t1 ID=Gchil1733.t1|Name=Gchil1733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=547bp
MKNGIAYVTASECVLHWFRRDLRLTDNLALNAAVRLARCTKCPLIPLYIL
DPSLDPENCSAVRMRFLRESVCNLQSNLLEHDLHLRVVTGNANEVLPQLA
RRWNAKNVFWEREYAPEPRKRDELIRSDLLTLDIHVNTFPGFLLYDPDEL
LKHCDGVAPRNMNSMFNLLDRVGEPQKPKKFADGDTVSLVEDPFVSRDKT
ENMFDIPSFTELGYEDVKGQWTIFKGGEDEGLRRMENFLRRKNGRTAANF
SKPKTSPAAFSPRETTVLSPYLALGCVSCRSFFSKLREIEQRHKLNEMRQ
TTLVGQLTWREHFWLLAYTVENFHQMTGNVVCRQISWRKDEESLKLLKCW
AQARTGFPWIDALMTQLQKEGFVHHLGRHSLACFLTRGDLWISWEEGFKV
FEKYLMDYDYALNSANWMWLSCSAFFVMYYRVYSPIAFGKKWDKDGAFIR
RYLPVLKNMPSKYIYEPWKAPETVQRKAGCIIGKDYPEPMVDHAKASKEN
IEKMKKDYAKKEFGKLKQIKDASESEKNGRTPRTSDDRPRRKRRRL*

mRNA from alignment at tig00004403_pilon:2008435..2010075+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1733.t1 ID=Gchil1733.t1|Name=Gchil1733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at tig00004403_pilon:2008435..2010075+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAACGGAATCGCTTATGTAACGGCATCGGAATGTGTTTTACACTG
GTTTCGAAGGGATCTCCGCCTCACTGACAATCTTGCCTTAAATGCGGCAG
TTAGACTTGCGAGGTGCACCAAATGTCCGCTCATTCCTCTCTACATCTTG
GATCCATCTCTAGACCCGGAGAACTGCAGTGCAGTTCGAATGCGGTTTTT
GCGCGAGTCTGTGTGCAACCTACAATCAAACCTGTTGGAACACGATCTTC
ATCTCAGAGTAGTAACCGGTAATGCCAATGAAGTCTTGCCTCAGCTCGCT
CGGCGCTGGAATGCGAAAAATGTATTCTGGGAGAGGGAGTACGCGCCCGA
ACCACGAAAGAGAGATGAACTTATCAGGTCTGATCTTTTAACGCTCGATA
TTCACGTGAATACATTTCCCGGGTTTCTTCTGTACGATCCTGATGAGCTT
CTCAAACACTGTGATGGAGTTGCCCCAAGAAATATGAACAGTATGTTCAA
TCTTTTGGATCGCGTGGGAGAACCGCAGAAGCCGAAGAAATTTGCCGATG
GGGACACCGTGAGTCTTGTGGAAGATCCCTTTGTTTCTAGAGATAAAACT
GAAAATATGTTCGACATTCCGTCTTTCACAGAACTTGGATATGAAGACGT
GAAAGGTCAATGGACGATTTTCAAAGGGGGAGAGGATGAGGGCTTGCGGC
GGATGGAAAATTTCTTGCGGCGGAAGAACGGCCGTACCGCTGCCAACTTC
TCAAAACCTAAAACTAGTCCAGCCGCTTTTTCTCCTCGAGAGACCACTGT
CTTATCGCCCTATCTGGCTCTTGGATGTGTCAGTTGTCGGTCATTCTTCT
CTAAATTGCGAGAGATTGAGCAACGTCACAAGCTGAATGAGATGCGTCAA
ACTACTTTGGTGGGGCAGCTCACATGGCGGGAACACTTTTGGCTATTGGC
TTACACAGTTGAGAATTTCCACCAGATGACAGGCAACGTTGTGTGTAGAC
AGATTAGTTGGCGCAAGGACGAAGAATCATTGAAGTTACTCAAATGCTGG
GCTCAAGCCCGAACGGGATTTCCTTGGATTGACGCTTTGATGACTCAATT
GCAGAAAGAGGGTTTCGTTCATCACCTAGGAAGACATAGTTTGGCCTGTT
TTTTAACAAGAGGCGATCTGTGGATCAGCTGGGAAGAAGGCTTCAAAGTC
TTTGAAAAGTATCTGATGGATTACGACTACGCCCTGAATTCTGCGAATTG
GATGTGGCTCAGCTGCAGTGCATTTTTTGTCATGTACTACCGCGTTTACT
CACCAATTGCGTTTGGAAAAAAGTGGGATAAAGATGGGGCATTCATTCGA
CGATACCTTCCCGTGCTGAAAAATATGCCATCGAAGTATATCTACGAACC
GTGGAAAGCGCCGGAAACTGTGCAAAGGAAAGCCGGTTGTATCATTGGAA
AAGACTACCCAGAGCCCATGGTCGATCATGCCAAGGCAAGCAAGGAAAAT
ATAGAGAAAATGAAGAAGGATTATGCGAAGAAGGAGTTCGGTAAACTGAA
ACAAATCAAAGACGCGTCTGAATCGGAGAAAAACGGTCGCACACCTCGAA
CAAGTGATGATCGTCCACGCAGGAAAAGAAGACGGCTCTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:2008435..2010075+

>Gchil1733.t1 ID=Gchil1733.t1|Name=Gchil1733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1641bp|location=Sequence derived from alignment at tig00004403_pilon:2008435..2010075+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAACGGAATCGCTTATGTAACGGCATCGGAATGTGTTTTACACTG
GTTTCGAAGGGATCTCCGCCTCACTGACAATCTTGCCTTAAATGCGGCAG
TTAGACTTGCGAGGTGCACCAAATGTCCGCTCATTCCTCTCTACATCTTG
GATCCATCTCTAGACCCGGAGAACTGCAGTGCAGTTCGAATGCGGTTTTT
GCGCGAGTCTGTGTGCAACCTACAATCAAACCTGTTGGAACACGATCTTC
ATCTCAGAGTAGTAACCGGTAATGCCAATGAAGTCTTGCCTCAGCTCGCT
CGGCGCTGGAATGCGAAAAATGTATTCTGGGAGAGGGAGTACGCGCCCGA
ACCACGAAAGAGAGATGAACTTATCAGGTCTGATCTTTTAACGCTCGATA
TTCACGTGAATACATTTCCCGGGTTTCTTCTGTACGATCCTGATGAGCTT
CTCAAACACTGTGATGGAGTTGCCCCAAGAAATATGAACAGTATGTTCAA
TCTTTTGGATCGCGTGGGAGAACCGCAGAAGCCGAAGAAATTTGCCGATG
GGGACACCGTGAGTCTTGTGGAAGATCCCTTTGTTTCTAGAGATAAAACT
GAAAATATGTTCGACATTCCGTCTTTCACAGAACTTGGATATGAAGACGT
GAAAGGTCAATGGACGATTTTCAAAGGGGGAGAGGATGAGGGCTTGCGGC
GGATGGAAAATTTCTTGCGGCGGAAGAACGGCCGTACCGCTGCCAACTTC
TCAAAACCTAAAACTAGTCCAGCCGCTTTTTCTCCTCGAGAGACCACTGT
CTTATCGCCCTATCTGGCTCTTGGATGTGTCAGTTGTCGGTCATTCTTCT
CTAAATTGCGAGAGATTGAGCAACGTCACAAGCTGAATGAGATGCGTCAA
ACTACTTTGGTGGGGCAGCTCACATGGCGGGAACACTTTTGGCTATTGGC
TTACACAGTTGAGAATTTCCACCAGATGACAGGCAACGTTGTGTGTAGAC
AGATTAGTTGGCGCAAGGACGAAGAATCATTGAAGTTACTCAAATGCTGG
GCTCAAGCCCGAACGGGATTTCCTTGGATTGACGCTTTGATGACTCAATT
GCAGAAAGAGGGTTTCGTTCATCACCTAGGAAGACATAGTTTGGCCTGTT
TTTTAACAAGAGGCGATCTGTGGATCAGCTGGGAAGAAGGCTTCAAAGTC
TTTGAAAAGTATCTGATGGATTACGACTACGCCCTGAATTCTGCGAATTG
GATGTGGCTCAGCTGCAGTGCATTTTTTGTCATGTACTACCGCGTTTACT
CACCAATTGCGTTTGGAAAAAAGTGGGATAAAGATGGGGCATTCATTCGA
CGATACCTTCCCGTGCTGAAAAATATGCCATCGAAGTATATCTACGAACC
GTGGAAAGCGCCGGAAACTGTGCAAAGGAAAGCCGGTTGTATCATTGGAA
AAGACTACCCAGAGCCCATGGTCGATCATGCCAAGGCAAGCAAGGAAAAT
ATAGAGAAAATGAAGAAGGATTATGCGAAGAAGGAGTTCGGTAAACTGAA
ACAAATCAAAGACGCGTCTGAATCGGAGAAAAACGGTCGCACACCTCGAA
CAAGTGATGATCGTCCACGCAGGAAAAGAAGACGGCTCTGA