Gchil1730.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1730.t1
Unique NameGchil1730.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1998871..1999724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010508107.1
Preferred namePMM
PFAMsPMM
Max annot lvl35493|Streptophyta
KEGG rclassRC00408
KEGG koko:K17497
KEGG ReactionR01818
KEGG Pathwayko00051,ko00520,ko01100,ko01110,ko01130,map00051,map00520,map01100,map01110,map01130
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0004615,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006013,GO:0006082,GO:0006464,GO:0006486,GO:0006487,GO:0006605,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009110,GO:0009628,GO:0009651,GO:0009987,GO:0015031,GO:0015833,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0019318,GO:0019538,GO:0019752,GO:0019852,GO:0019853,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0036211,GO:0042364,GO:0042886,GO:0043170,GO:0043412,GO:0043413,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045047,GO:0045184,GO:0046364,GO:0046394,GO:0046907,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0070085,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue1.45e-114
EggNOG OGsCOG0561@1|root,KOG3189@2759|Eukaryota,37JBP@33090|Viridiplantae,3G95V@35493|Streptophyta,3HNN0@3699|Brassicales
EC5.4.2.8
Descriptionin the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1730Gchil1730Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1998871..1999724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1730.t1Gchil1730.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1998871..1999724 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1730.t1.start1Gchil1730.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1998871..1998873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1730.t1.CDS1Gchil1730.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1998871..1998948 +
Gchil1730.t1.CDS2Gchil1730.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1999053..1999724 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1730.t1.exon1Gchil1730.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1998871..1998948 +
Gchil1730.t1.exon2Gchil1730.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1999053..1999724 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1730.t1.intron1Gchil1730.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1998949..1999052 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1730.t1.stop1Gchil1730.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1999722..1999724 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1730.t1 ID=Gchil1730.t1|Name=Gchil1730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=250bp
MNPSDDRPQHVIALFDVDGTLTLPRLTATKEMIDFLAELRKSILIGMVGG
SDLKKQKEQLGDQVLDMFDYTFSENGLVAYKGTQLVAEASITAHLGEQRL
QKLINFCLRYIADLQIPIKRGTFVEFRKGMLNVSPIGRNCSQKERCEFEL
YDKQQNIREQFVDVLKKEFADYSLTFSIGGQISFDVFPVGWDKTYALQFV
DHIKEIHFFGDKTYPGGNDYEIYETPRTIGHSVKNPDETMQLCRELFLS*
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spliced messenger RNA

>Gchil1730.t1 ID=Gchil1730.t1|Name=Gchil1730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=750bp|location=Sequence derived from alignment at tig00004403_pilon:1998871..1999724+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTTCTGATGATCGCCCGCAGCATGTCATTGCGCTTTTCGATGT
CGATGGCACTCTCACATTGCCGCGTCTCACTGCCACGAAGGAGATGATTG
ATTTTCTGGCGGAGCTGCGCAAGTCGATCCTCATCGGCATGGTAGGTGGC
TCCGACCTCAAGAAACAGAAGGAACAGCTTGGCGATCAAGTGCTCGACAT
GTTCGACTACACCTTCTCGGAGAACGGCTTGGTGGCCTACAAGGGCACTC
AGCTGGTTGCCGAGGCTAGCATCACCGCTCACCTTGGCGAGCAGCGGCTT
CAAAAACTTATTAACTTTTGTTTGCGTTACATTGCTGACTTGCAGATTCC
CATCAAGCGCGGTACCTTTGTGGAGTTCCGAAAGGGAATGTTGAACGTGT
CGCCAATTGGAAGGAATTGTAGCCAGAAGGAGCGCTGCGAGTTTGAGCTG
TACGATAAGCAACAAAACATTAGAGAACAGTTTGTTGATGTGCTCAAGAA
GGAGTTTGCCGATTACAGCCTCACTTTTTCAATTGGCGGTCAGATTTCGT
TTGATGTCTTCCCCGTTGGCTGGGATAAGACGTATGCGTTGCAGTTCGTC
GATCACATCAAGGAGATTCACTTCTTCGGCGACAAGACATATCCCGGCGG
GAATGACTACGAGATATACGAGACGCCTAGGACCATTGGTCATAGCGTGA
AGAATCCAGATGAGACTATGCAGCTTTGTCGCGAGCTGTTCTTGTCGTAA
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protein sequence of Gchil1730.t1

>Gchil1730.t1 ID=Gchil1730.t1|Name=Gchil1730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=250bp
MNPSDDRPQHVIALFDVDGTLTLPRLTATKEMIDFLAELRKSILIGMVGG
SDLKKQKEQLGDQVLDMFDYTFSENGLVAYKGTQLVAEASITAHLGEQRL
QKLINFCLRYIADLQIPIKRGTFVEFRKGMLNVSPIGRNCSQKERCEFEL
YDKQQNIREQFVDVLKKEFADYSLTFSIGGQISFDVFPVGWDKTYALQFV
DHIKEIHFFGDKTYPGGNDYEIYETPRTIGHSVKNPDETMQLCRELFLS*
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mRNA from alignment at tig00004403_pilon:1998871..1999724+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1730.t1 ID=Gchil1730.t1|Name=Gchil1730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=854bp|location=Sequence derived from alignment at tig00004403_pilon:1998871..1999724+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTTCTGATGATCGCCCGCAGCATGTCATTGCGCTTTTCGATGT
CGATGGCACTCTCACATTGCCGCGTCTCGTACGTGATTTACTCTTTGTTA
TACGCCGGTTTGCCGCCGGTTTGCCGCCGTTGCGCTGCTTCGTTTGTACT
GACTGTATCATGACTTTTTGGCACTTAAAAAGACTGCCACGAAGGAGATG
ATTGATTTTCTGGCGGAGCTGCGCAAGTCGATCCTCATCGGCATGGTAGG
TGGCTCCGACCTCAAGAAACAGAAGGAACAGCTTGGCGATCAAGTGCTCG
ACATGTTCGACTACACCTTCTCGGAGAACGGCTTGGTGGCCTACAAGGGC
ACTCAGCTGGTTGCCGAGGCTAGCATCACCGCTCACCTTGGCGAGCAGCG
GCTTCAAAAACTTATTAACTTTTGTTTGCGTTACATTGCTGACTTGCAGA
TTCCCATCAAGCGCGGTACCTTTGTGGAGTTCCGAAAGGGAATGTTGAAC
GTGTCGCCAATTGGAAGGAATTGTAGCCAGAAGGAGCGCTGCGAGTTTGA
GCTGTACGATAAGCAACAAAACATTAGAGAACAGTTTGTTGATGTGCTCA
AGAAGGAGTTTGCCGATTACAGCCTCACTTTTTCAATTGGCGGTCAGATT
TCGTTTGATGTCTTCCCCGTTGGCTGGGATAAGACGTATGCGTTGCAGTT
CGTCGATCACATCAAGGAGATTCACTTCTTCGGCGACAAGACATATCCCG
GCGGGAATGACTACGAGATATACGAGACGCCTAGGACCATTGGTCATAGC
GTGAAGAATCCAGATGAGACTATGCAGCTTTGTCGCGAGCTGTTCTTGTC
GTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1998871..1999724+

>Gchil1730.t1 ID=Gchil1730.t1|Name=Gchil1730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=750bp|location=Sequence derived from alignment at tig00004403_pilon:1998871..1999724+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTTCTGATGATCGCCCGCAGCATGTCATTGCGCTTTTCGATGT
CGATGGCACTCTCACATTGCCGCGTCTCACTGCCACGAAGGAGATGATTG
ATTTTCTGGCGGAGCTGCGCAAGTCGATCCTCATCGGCATGGTAGGTGGC
TCCGACCTCAAGAAACAGAAGGAACAGCTTGGCGATCAAGTGCTCGACAT
GTTCGACTACACCTTCTCGGAGAACGGCTTGGTGGCCTACAAGGGCACTC
AGCTGGTTGCCGAGGCTAGCATCACCGCTCACCTTGGCGAGCAGCGGCTT
CAAAAACTTATTAACTTTTGTTTGCGTTACATTGCTGACTTGCAGATTCC
CATCAAGCGCGGTACCTTTGTGGAGTTCCGAAAGGGAATGTTGAACGTGT
CGCCAATTGGAAGGAATTGTAGCCAGAAGGAGCGCTGCGAGTTTGAGCTG
TACGATAAGCAACAAAACATTAGAGAACAGTTTGTTGATGTGCTCAAGAA
GGAGTTTGCCGATTACAGCCTCACTTTTTCAATTGGCGGTCAGATTTCGT
TTGATGTCTTCCCCGTTGGCTGGGATAAGACGTATGCGTTGCAGTTCGTC
GATCACATCAAGGAGATTCACTTCTTCGGCGACAAGACATATCCCGGCGG
GAATGACTACGAGATATACGAGACGCCTAGGACCATTGGTCATAGCGTGA
AGAATCCAGATGAGACTATGCAGCTTTGTCGCGAGCTGTTCTTGTCGTAA
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