Gchil1729.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1729.t1
Unique NameGchil1729.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1997331..1998371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709322.1
PFAMsROK
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00847
KEGG ReactionR00760,R00867,R03920
KEGG Pathwayko00051,ko00500,ko00520,ko01100,map00051,map00500,map00520,map01100
Evalue7.41e-83
EggNOG OGsCOG1940@1|root,2QRD3@2759|Eukaryota
EC2.7.1.4
DescriptionROK family
COG categoryGK
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1729Gchil1729Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1997331..1998371 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1729.t1.stop1Gchil1729.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1997331..1997333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1729.t1.CDS1Gchil1729.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1997331..1998371 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1729.t1.exon1Gchil1729.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1997331..1998371 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1729.t1.start1Gchil1729.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1998369..1998371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1729.t1Gchil1729.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1997331..1998371 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1729.t1 ID=Gchil1729.t1|Name=Gchil1729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=347bp
MPSLSTPAWRGAALTAAFVSGAALSHLYHKRRAHLLSPISHDDMVLPPNS
LLAAVELGGTTCRAAMAFSDEPTKLVDSTEVRTTDPHTTLSHIVRFLRTH
APFVSLGIASFGPLDLDHSSPTYGYVTSTNKPGWRYTNVMSFFKEFNVAI
GFDTDVNAPAMAEVLYGNHTGDSCAYITVGTGIGVGMVVHGNPVHGLVHP
EAGHVMPLRKEGDQYGGWLSDHPFSVESMASAKACADRAGVEANNLASVS
DEHGAWDDVAYYLAQLCHSICMIASPHVIVLSGGVMKRSLLFDKIRQHFV
QINNEYLSIDRLTKDIDKYIMPSKFGNDMGIIGAVELARRAAVGIK*
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spliced messenger RNA

>Gchil1729.t1 ID=Gchil1729.t1|Name=Gchil1729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00004403_pilon:1997331..1998371- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCCCTCTCCACCCCCGCTTGGCGTGGCGCGGCGCTCACTGCTGC
CTTTGTGTCAGGAGCGGCGCTCAGCCATCTGTACCACAAGCGCAGAGCGC
ACCTCCTCTCGCCCATCTCTCATGATGACATGGTGTTGCCGCCCAATTCG
CTGCTCGCAGCAGTGGAGCTCGGCGGTACCACGTGTCGCGCTGCGATGGC
CTTTTCCGACGAACCCACCAAGTTGGTGGACAGCACGGAGGTTCGTACCA
CCGATCCTCATACCACTCTCTCACACATCGTGCGCTTTCTACGAACGCAC
GCGCCCTTTGTCTCGCTCGGTATCGCCTCTTTTGGCCCATTAGATCTCGA
TCACTCTTCGCCGACGTACGGCTACGTGACGTCCACCAATAAGCCCGGCT
GGAGATACACGAATGTGATGTCCTTTTTCAAAGAATTCAACGTTGCCATT
GGTTTCGATACAGACGTGAACGCGCCCGCTATGGCAGAAGTGCTGTATGG
TAATCACACGGGCGATAGCTGTGCGTACATCACGGTGGGCACCGGTATTG
GCGTCGGAATGGTGGTACACGGTAATCCGGTACACGGTCTCGTGCACCCG
GAGGCGGGCCACGTGATGCCACTGAGGAAAGAGGGAGACCAGTATGGAGG
ATGGCTCAGCGACCACCCGTTTTCCGTAGAATCGATGGCGAGCGCAAAGG
CGTGCGCCGATCGGGCGGGCGTCGAGGCCAACAATCTGGCGTCGGTGAGC
GACGAGCATGGTGCGTGGGATGATGTGGCATACTACCTTGCGCAGCTTTG
CCATTCGATTTGCATGATAGCCTCGCCGCACGTTATCGTCTTGTCGGGCG
GAGTGATGAAGAGAAGCTTGTTGTTCGACAAGATCCGGCAGCACTTTGTG
CAAATCAACAATGAATATCTTTCAATCGATAGGCTGACCAAGGACATCGA
CAAGTACATTATGCCCAGTAAATTTGGCAATGACATGGGCATCATTGGTG
CGGTGGAGCTGGCGCGGCGGGCTGCGGTAGGAATAAAGTGA
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protein sequence of Gchil1729.t1

>Gchil1729.t1 ID=Gchil1729.t1|Name=Gchil1729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=347bp
MPSLSTPAWRGAALTAAFVSGAALSHLYHKRRAHLLSPISHDDMVLPPNS
LLAAVELGGTTCRAAMAFSDEPTKLVDSTEVRTTDPHTTLSHIVRFLRTH
APFVSLGIASFGPLDLDHSSPTYGYVTSTNKPGWRYTNVMSFFKEFNVAI
GFDTDVNAPAMAEVLYGNHTGDSCAYITVGTGIGVGMVVHGNPVHGLVHP
EAGHVMPLRKEGDQYGGWLSDHPFSVESMASAKACADRAGVEANNLASVS
DEHGAWDDVAYYLAQLCHSICMIASPHVIVLSGGVMKRSLLFDKIRQHFV
QINNEYLSIDRLTKDIDKYIMPSKFGNDMGIIGAVELARRAAVGIK*
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mRNA from alignment at tig00004403_pilon:1997331..1998371-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1729.t1 ID=Gchil1729.t1|Name=Gchil1729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00004403_pilon:1997331..1998371- (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCCCTCTCCACCCCCGCTTGGCGTGGCGCGGCGCTCACTGCTGC
CTTTGTGTCAGGAGCGGCGCTCAGCCATCTGTACCACAAGCGCAGAGCGC
ACCTCCTCTCGCCCATCTCTCATGATGACATGGTGTTGCCGCCCAATTCG
CTGCTCGCAGCAGTGGAGCTCGGCGGTACCACGTGTCGCGCTGCGATGGC
CTTTTCCGACGAACCCACCAAGTTGGTGGACAGCACGGAGGTTCGTACCA
CCGATCCTCATACCACTCTCTCACACATCGTGCGCTTTCTACGAACGCAC
GCGCCCTTTGTCTCGCTCGGTATCGCCTCTTTTGGCCCATTAGATCTCGA
TCACTCTTCGCCGACGTACGGCTACGTGACGTCCACCAATAAGCCCGGCT
GGAGATACACGAATGTGATGTCCTTTTTCAAAGAATTCAACGTTGCCATT
GGTTTCGATACAGACGTGAACGCGCCCGCTATGGCAGAAGTGCTGTATGG
TAATCACACGGGCGATAGCTGTGCGTACATCACGGTGGGCACCGGTATTG
GCGTCGGAATGGTGGTACACGGTAATCCGGTACACGGTCTCGTGCACCCG
GAGGCGGGCCACGTGATGCCACTGAGGAAAGAGGGAGACCAGTATGGAGG
ATGGCTCAGCGACCACCCGTTTTCCGTAGAATCGATGGCGAGCGCAAAGG
CGTGCGCCGATCGGGCGGGCGTCGAGGCCAACAATCTGGCGTCGGTGAGC
GACGAGCATGGTGCGTGGGATGATGTGGCATACTACCTTGCGCAGCTTTG
CCATTCGATTTGCATGATAGCCTCGCCGCACGTTATCGTCTTGTCGGGCG
GAGTGATGAAGAGAAGCTTGTTGTTCGACAAGATCCGGCAGCACTTTGTG
CAAATCAACAATGAATATCTTTCAATCGATAGGCTGACCAAGGACATCGA
CAAGTACATTATGCCCAGTAAATTTGGCAATGACATGGGCATCATTGGTG
CGGTGGAGCTGGCGCGGCGGGCTGCGGTAGGAATAAAGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1997331..1998371-

>Gchil1729.t1 ID=Gchil1729.t1|Name=Gchil1729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00004403_pilon:1997331..1998371- (Gracilaria chilensis NLEC103_M9 male)
ATGCCATCCCTCTCCACCCCCGCTTGGCGTGGCGCGGCGCTCACTGCTGC
CTTTGTGTCAGGAGCGGCGCTCAGCCATCTGTACCACAAGCGCAGAGCGC
ACCTCCTCTCGCCCATCTCTCATGATGACATGGTGTTGCCGCCCAATTCG
CTGCTCGCAGCAGTGGAGCTCGGCGGTACCACGTGTCGCGCTGCGATGGC
CTTTTCCGACGAACCCACCAAGTTGGTGGACAGCACGGAGGTTCGTACCA
CCGATCCTCATACCACTCTCTCACACATCGTGCGCTTTCTACGAACGCAC
GCGCCCTTTGTCTCGCTCGGTATCGCCTCTTTTGGCCCATTAGATCTCGA
TCACTCTTCGCCGACGTACGGCTACGTGACGTCCACCAATAAGCCCGGCT
GGAGATACACGAATGTGATGTCCTTTTTCAAAGAATTCAACGTTGCCATT
GGTTTCGATACAGACGTGAACGCGCCCGCTATGGCAGAAGTGCTGTATGG
TAATCACACGGGCGATAGCTGTGCGTACATCACGGTGGGCACCGGTATTG
GCGTCGGAATGGTGGTACACGGTAATCCGGTACACGGTCTCGTGCACCCG
GAGGCGGGCCACGTGATGCCACTGAGGAAAGAGGGAGACCAGTATGGAGG
ATGGCTCAGCGACCACCCGTTTTCCGTAGAATCGATGGCGAGCGCAAAGG
CGTGCGCCGATCGGGCGGGCGTCGAGGCCAACAATCTGGCGTCGGTGAGC
GACGAGCATGGTGCGTGGGATGATGTGGCATACTACCTTGCGCAGCTTTG
CCATTCGATTTGCATGATAGCCTCGCCGCACGTTATCGTCTTGTCGGGCG
GAGTGATGAAGAGAAGCTTGTTGTTCGACAAGATCCGGCAGCACTTTGTG
CAAATCAACAATGAATATCTTTCAATCGATAGGCTGACCAAGGACATCGA
CAAGTACATTATGCCCAGTAAATTTGGCAATGACATGGGCATCATTGGTG
CGGTGGAGCTGGCGCGGCGGGCTGCGGTAGGAATAAAGTGA
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