Gchil1724.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1724.t1
Unique NameGchil1724.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1986879..1987462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog388467.A19Y_4423
PFAMsDUF1825
Max annot lvl1117|Cyanobacteria
Evalue3.48e-18
EggNOG OGs2C20Q@1|root,31CJR@2|Bacteria,1G709@1117|Cyanobacteria,1HBH1@1150|Oscillatoriales
DescriptionDomain of unknown function (DUF1825)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1724Gchil1724Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1986879..1987462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1724.t1Gchil1724.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1986879..1987462 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1724.t1.stop1Gchil1724.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1986879..1986881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1724.t1.CDS1Gchil1724.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1986879..1987106 -
Gchil1724.t1.CDS2Gchil1724.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1987190..1987462 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1724.t1.exon1Gchil1724.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1986879..1987106 -
Gchil1724.t1.exon2Gchil1724.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1987190..1987462 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1724.t1.intron1Gchil1724.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1987107..1987189 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1724.t1.start1Gchil1724.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1987460..1987462 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1724.t1 ID=Gchil1724.t1|Name=Gchil1724.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=167bp
MTGFMPKKSPAFAIATPLAPRSLNINVCRKRSKIPQTTTTHNHRRARVSM
IGPFFPDFSDSKLMKSEIVRKEMGSLERDYAELAKLGTRYETFDPRGKHL
FIDSALDVVDRFAIFLTRLKLSEEFSAQMFIKQYSVRLQEYGLTIDSLIA
NTKRSLEMMRTEIPEV*
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spliced messenger RNA

>Gchil1724.t1 ID=Gchil1724.t1|Name=Gchil1724.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00004403_pilon:1986879..1987462- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGGTTCATGCCGAAGAAAAGCCCAGCTTTTGCGATTGCAACTCC
CTTAGCGCCGAGGTCGCTTAACATTAACGTTTGCAGAAAACGGAGCAAAA
TCCCGCAAACTACCACCACACACAATCACCGCCGAGCAAGAGTATCCATG
ATAGGCCCTTTCTTTCCAGATTTCTCGGATAGCAAGCTCATGAAGTCTGA
AATAGTGCGAAAAGAAATGGGCTCCCTTGAACGTGACTACGCCGAGCTAG
CGAAGCTAGGGACTCGATATGAGACTTTTGATCCGCGAGGAAAGCATCTA
TTTATTGATTCGGCCTTGGACGTTGTTGATAGATTCGCAATCTTTCTCAC
ACGCCTCAAGCTAAGCGAGGAGTTTTCCGCGCAAATGTTCATCAAACAGT
ATTCTGTCAGACTACAAGAGTATGGTCTCACGATTGACAGTCTCATCGCA
AACACGAAGCGCAGTTTGGAAATGATGCGTACTGAGATCCCGGAAGTTTA
A
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protein sequence of Gchil1724.t1

>Gchil1724.t1 ID=Gchil1724.t1|Name=Gchil1724.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=167bp
MTGFMPKKSPAFAIATPLAPRSLNINVCRKRSKIPQTTTTHNHRRARVSM
IGPFFPDFSDSKLMKSEIVRKEMGSLERDYAELAKLGTRYETFDPRGKHL
FIDSALDVVDRFAIFLTRLKLSEEFSAQMFIKQYSVRLQEYGLTIDSLIA
NTKRSLEMMRTEIPEV*
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mRNA from alignment at tig00004403_pilon:1986879..1987462-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1724.t1 ID=Gchil1724.t1|Name=Gchil1724.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=584bp|location=Sequence derived from alignment at tig00004403_pilon:1986879..1987462- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGGGTTCATGCCGAAGAAAAGCCCAGCTTTTGCGATTGCAACTCC
CTTAGCGCCGAGGTCGCTTAACATTAACGTTTGCAGAAAACGGAGCAAAA
TCCCGCAAACTACCACCACACACAATCACCGCCGAGCAAGAGTATCCATG
ATAGGCCCTTTCTTTCCAGATTTCTCGGATAGCAAGCTCATGAAGTCTGA
AATAGTGCGAAAAGAAATGGGCTCCCTTGAACGTGACTACGCCGAGCTAG
CGAAGCTAGGGACTCGATATGAGGTACGTCGGTCCACAATACATTTAAAC
ACGGCTTAGAGCGTCGTTATGTGTGGCTTCTAACCTAGTCCTTGTTTTGC
GCTCAGACTTTTGATCCGCGAGGAAAGCATCTATTTATTGATTCGGCCTT
GGACGTTGTTGATAGATTCGCAATCTTTCTCACACGCCTCAAGCTAAGCG
AGGAGTTTTCCGCGCAAATGTTCATCAAACAGTATTCTGTCAGACTACAA
GAGTATGGTCTCACGATTGACAGTCTCATCGCAAACACGAAGCGCAGTTT
GGAAATGATGCGTACTGAGATCCCGGAAGTTTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1986879..1987462-

>Gchil1724.t1 ID=Gchil1724.t1|Name=Gchil1724.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00004403_pilon:1986879..1987462- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGGGTTCATGCCGAAGAAAAGCCCAGCTTTTGCGATTGCAACTCC
CTTAGCGCCGAGGTCGCTTAACATTAACGTTTGCAGAAAACGGAGCAAAA
TCCCGCAAACTACCACCACACACAATCACCGCCGAGCAAGAGTATCCATG
ATAGGCCCTTTCTTTCCAGATTTCTCGGATAGCAAGCTCATGAAGTCTGA
AATAGTGCGAAAAGAAATGGGCTCCCTTGAACGTGACTACGCCGAGCTAG
CGAAGCTAGGGACTCGATATGAGACTTTTGATCCGCGAGGAAAGCATCTA
TTTATTGATTCGGCCTTGGACGTTGTTGATAGATTCGCAATCTTTCTCAC
ACGCCTCAAGCTAAGCGAGGAGTTTTCCGCGCAAATGTTCATCAAACAGT
ATTCTGTCAGACTACAAGAGTATGGTCTCACGATTGACAGTCTCATCGCA
AACACGAAGCGCAGTTTGGAAATGATGCGTACTGAGATCCCGGAAGTTTA
A
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