Gchil1720.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1720.t1
Unique NameGchil1720.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1977298..1978346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM2G408242_P04
PFAMsCyclin_N
Max annot lvl35493|Streptophyta
KEGG koko:K15161
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue3.53e-56
EggNOG OGsCOG5333@1|root,KOG0794@2759|Eukaryota,37M1X@33090|Viridiplantae,3GC6F@35493|Streptophyta,3KRP6@4447|Liliopsida,3ICKH@38820|Poales
DescriptionBelongs to the cyclin family
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1720Gchil1720Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1977298..1978346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1720.t1Gchil1720.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1977298..1978346 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1720.t1.start1Gchil1720.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1977298..1977300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1720.t1.CDS1Gchil1720.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1977298..1977389 +
Gchil1720.t1.CDS2Gchil1720.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1977479..1977671 +
Gchil1720.t1.CDS3Gchil1720.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1977768..1978346 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1720.t1.exon1Gchil1720.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1977298..1977389 +
Gchil1720.t1.exon2Gchil1720.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1977479..1977671 +
Gchil1720.t1.exon3Gchil1720.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1977768..1978346 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1720.t1.intron1Gchil1720.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1977390..1977478 +
Gchil1720.t1.intron2Gchil1720.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1977672..1977767 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1720.t1.stop1Gchil1720.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1978344..1978346 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1720.t1 ID=Gchil1720.t1|Name=Gchil1720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=288bp
MAANFWNSTHYRHWLRRVDEVYKQADAMMKKDQSAFKEEEQNSIKVIYSQ
IISALAMNSNLRQRVAATAIVYYRRFFARNAVRDHDPRLIAPVALYLAAK
AEEHTLQAKIVVQQMVELYQADHPYPYTVGHVYDYEFKLIAALEFDLIIY
HPYRPMIQYCAEASFHDLVTAAWPILNDSYRTDACLRYPPYLIAIACIYI
AGTLQDREMTSWVKKMNIDLQELADIIQYLSVIYANPNTIRTSGPQVERI
NNKLQTHFGPKIQLAPISLSKKPPSSSRPKISLKVVE*
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spliced messenger RNA

>Gchil1720.t1 ID=Gchil1720.t1|Name=Gchil1720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00004403_pilon:1977298..1978346+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCAACTTTTGGAATTCGACCCATTATCGTCATTGGCTTCGAAG
GGTTGACGAAGTATACAAACAAGCAGATGCCATGATGAAGAAAGACCAAA
GTGCTTTCAAAGAAGAAGAACAGAACAGCATCAAAGTCATTTACTCACAG
ATTATCTCCGCTTTGGCAATGAATTCAAACCTACGGCAACGCGTTGCAGC
CACCGCTATTGTGTACTATAGAAGATTTTTCGCGAGGAATGCTGTCAGAG
ACCACGACCCCAGGCTCATTGCACCCGTCGCACTGTATCTGGCGGCAAAG
GCAGAAGAACACACACTTCAGGCGAAAATTGTGGTTCAGCAGATGGTGGA
ACTCTATCAAGCAGATCATCCTTACCCCTACACTGTCGGTCATGTCTACG
ATTACGAGTTCAAACTCATCGCTGCCCTGGAGTTTGATCTCATCATATAT
CATCCTTACCGACCGATGATTCAATACTGCGCAGAAGCATCTTTTCATGA
CTTGGTCACTGCAGCCTGGCCCATACTCAATGACTCATATAGAACCGATG
CATGCTTGAGATATCCACCTTACCTAATTGCAATTGCGTGTATATATATC
GCTGGAACGCTTCAAGACCGGGAAATGACAAGCTGGGTGAAGAAGATGAA
TATCGATTTGCAGGAACTCGCAGACATAATCCAATATCTCTCTGTGATAT
ATGCCAACCCAAACACAATTCGAACGAGTGGACCACAAGTGGAAAGGATA
AACAACAAGCTACAAACGCATTTTGGCCCCAAGATACAACTTGCTCCAAT
TAGTCTGTCAAAAAAGCCCCCCTCATCGAGCCGCCCGAAAATATCTCTGA
AGGTGGTAGAATGA
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protein sequence of Gchil1720.t1

>Gchil1720.t1 ID=Gchil1720.t1|Name=Gchil1720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=288bp
MAANFWNSTHYRHWLRRVDEVYKQADAMMKKDQSAFKEEEQNSIKVIYSQ
IISALAMNSNLRQRVAATAIVYYRRFFARNAVRDHDPRLIAPVALYLAAK
AEEHTLQAKIVVQQMVELYQADHPYPYTVGHVYDYEFKLIAALEFDLIIY
HPYRPMIQYCAEASFHDLVTAAWPILNDSYRTDACLRYPPYLIAIACIYI
AGTLQDREMTSWVKKMNIDLQELADIIQYLSVIYANPNTIRTSGPQVERI
NNKLQTHFGPKIQLAPISLSKKPPSSSRPKISLKVVE*
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mRNA from alignment at tig00004403_pilon:1977298..1978346+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1720.t1 ID=Gchil1720.t1|Name=Gchil1720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1049bp|location=Sequence derived from alignment at tig00004403_pilon:1977298..1978346+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCCAACTTTTGGAATTCGACCCATTATCGTCATTGGCTTCGAAG
GGTTGACGAAGTATACAAACAAGCAGATGCCATGATGAAGAAGTAAGTGC
TTACGCTTTGGTTGTTGCCCCCACAAAATAAGGTTCATTTCACTAACATA
CAAGACCGCAATCGTTTTTAATCTGCCACAGAGACCAAAGTGCTTTCAAA
GAAGAAGAACAGAACAGCATCAAAGTCATTTACTCACAGATTATCTCCGC
TTTGGCAATGAATTCAAACCTACGGCAACGCGTTGCAGCCACCGCTATTG
TGTACTATAGAAGATTTTTCGCGAGGAATGCTGTCAGAGACCACGACCCC
AGGCTCATTGCACCCGTCGCACTGGTAAGTTGTATTGTATCTGCCCTGTG
TTCTCAGTCATAATTTGAACAAGAAACTGACGAAGGTCTCTGTTTCACTG
GGGTTTGATGCAAATCCTAGTATCTGGCGGCAAAGGCAGAAGAACACACA
CTTCAGGCGAAAATTGTGGTTCAGCAGATGGTGGAACTCTATCAAGCAGA
TCATCCTTACCCCTACACTGTCGGTCATGTCTACGATTACGAGTTCAAAC
TCATCGCTGCCCTGGAGTTTGATCTCATCATATATCATCCTTACCGACCG
ATGATTCAATACTGCGCAGAAGCATCTTTTCATGACTTGGTCACTGCAGC
CTGGCCCATACTCAATGACTCATATAGAACCGATGCATGCTTGAGATATC
CACCTTACCTAATTGCAATTGCGTGTATATATATCGCTGGAACGCTTCAA
GACCGGGAAATGACAAGCTGGGTGAAGAAGATGAATATCGATTTGCAGGA
ACTCGCAGACATAATCCAATATCTCTCTGTGATATATGCCAACCCAAACA
CAATTCGAACGAGTGGACCACAAGTGGAAAGGATAAACAACAAGCTACAA
ACGCATTTTGGCCCCAAGATACAACTTGCTCCAATTAGTCTGTCAAAAAA
GCCCCCCTCATCGAGCCGCCCGAAAATATCTCTGAAGGTGGTAGAATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1977298..1978346+

>Gchil1720.t1 ID=Gchil1720.t1|Name=Gchil1720.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00004403_pilon:1977298..1978346+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGCCAACTTTTGGAATTCGACCCATTATCGTCATTGGCTTCGAAG
GGTTGACGAAGTATACAAACAAGCAGATGCCATGATGAAGAAAGACCAAA
GTGCTTTCAAAGAAGAAGAACAGAACAGCATCAAAGTCATTTACTCACAG
ATTATCTCCGCTTTGGCAATGAATTCAAACCTACGGCAACGCGTTGCAGC
CACCGCTATTGTGTACTATAGAAGATTTTTCGCGAGGAATGCTGTCAGAG
ACCACGACCCCAGGCTCATTGCACCCGTCGCACTGTATCTGGCGGCAAAG
GCAGAAGAACACACACTTCAGGCGAAAATTGTGGTTCAGCAGATGGTGGA
ACTCTATCAAGCAGATCATCCTTACCCCTACACTGTCGGTCATGTCTACG
ATTACGAGTTCAAACTCATCGCTGCCCTGGAGTTTGATCTCATCATATAT
CATCCTTACCGACCGATGATTCAATACTGCGCAGAAGCATCTTTTCATGA
CTTGGTCACTGCAGCCTGGCCCATACTCAATGACTCATATAGAACCGATG
CATGCTTGAGATATCCACCTTACCTAATTGCAATTGCGTGTATATATATC
GCTGGAACGCTTCAAGACCGGGAAATGACAAGCTGGGTGAAGAAGATGAA
TATCGATTTGCAGGAACTCGCAGACATAATCCAATATCTCTCTGTGATAT
ATGCCAACCCAAACACAATTCGAACGAGTGGACCACAAGTGGAAAGGATA
AACAACAAGCTACAAACGCATTTTGGCCCCAAGATACAACTTGCTCCAAT
TAGTCTGTCAAAAAAGCCCCCCTCATCGAGCCGCCCGAAAATATCTCTGA
AGGTGGTAGAATGA
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