Gchil1717.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1717.t1
Unique NameGchil1717.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1971403..1972071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog330214.NIDE0211
PFAMsDUF1365
Max annot lvl2|Bacteria
KEGG koko:K00574,ko:K09701
Evalue2.87e-35
EggNOG OGsCOG3496@1|root,COG3496@2|Bacteria
EC2.1.1.79
DescriptionProtein of unknown function (DUF1365)
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1717Gchil1717Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1971403..1972071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1717.t1.stop1Gchil1717.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1971403..1971405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1717.t1.CDS1Gchil1717.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1971403..1972071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1717.t1.exon1Gchil1717.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1971403..1972071 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1717.t1.start1Gchil1717.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1972069..1972071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1717.t1Gchil1717.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1971403..1972071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1717.t1 ID=Gchil1717.t1|Name=Gchil1717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=223bp
MICERPGDLYRTVCDLVERETERRPSGPIRLLTNPRVSGIEFNPVSFYYV
FEPDGTTLQCVVAEVGNFPWFEQHNYVVTTTTSSAFNTNKKEFHVSPFMQ
MENIAYDWVFHPPAENLRVRIAVSKQRQHFFTATLDAQKMEWSLFNLIRM
QLLYPLHSFRVMIGILYEAAKLFRSGFAFHPHPDGTQTKFSRAVEAIVGA
VNGLRSFLQKPCSMSRIVGRQH*
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spliced messenger RNA

>Gchil1717.t1 ID=Gchil1717.t1|Name=Gchil1717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004403_pilon:1971403..1972071- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGTGAGCGTCCTGGAGATCTGTATCGAACCGTGTGCGACCTTGT
AGAGCGGGAAACTGAAAGAAGGCCGTCAGGACCAATACGACTTCTGACTA
ATCCGCGAGTTTCAGGGATTGAGTTCAATCCAGTATCCTTTTACTACGTT
TTTGAACCTGATGGTACCACTCTTCAATGCGTAGTTGCAGAAGTGGGTAA
CTTTCCATGGTTTGAACAACATAACTATGTGGTAACAACAACAACATCTT
CCGCATTCAATACGAACAAGAAAGAGTTCCATGTTTCACCGTTCATGCAA
ATGGAAAACATAGCCTACGATTGGGTGTTTCACCCGCCTGCAGAGAACTT
AAGAGTTCGAATAGCGGTTTCCAAACAGCGTCAACATTTCTTCACAGCCA
CGCTTGATGCCCAAAAGATGGAATGGTCTCTGTTCAATTTGATTCGAATG
CAACTGCTATATCCTCTGCATTCTTTTCGCGTAATGATTGGAATTCTCTA
CGAAGCCGCAAAGCTTTTCCGAAGTGGTTTTGCTTTCCATCCACACCCAG
ATGGTACCCAAACAAAATTTTCTCGAGCTGTTGAAGCCATTGTTGGTGCA
GTCAATGGCCTGCGATCTTTTTTGCAGAAACCATGCAGCATGTCCAGGAT
TGTTGGCAGGCAACATTGA
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protein sequence of Gchil1717.t1

>Gchil1717.t1 ID=Gchil1717.t1|Name=Gchil1717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=223bp
MICERPGDLYRTVCDLVERETERRPSGPIRLLTNPRVSGIEFNPVSFYYV
FEPDGTTLQCVVAEVGNFPWFEQHNYVVTTTTSSAFNTNKKEFHVSPFMQ
MENIAYDWVFHPPAENLRVRIAVSKQRQHFFTATLDAQKMEWSLFNLIRM
QLLYPLHSFRVMIGILYEAAKLFRSGFAFHPHPDGTQTKFSRAVEAIVGA
VNGLRSFLQKPCSMSRIVGRQH*
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mRNA from alignment at tig00004403_pilon:1971403..1972071-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1717.t1 ID=Gchil1717.t1|Name=Gchil1717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004403_pilon:1971403..1972071- (Gracilaria chilensis NLEC103_M9 male)
ATGATTTGTGAGCGTCCTGGAGATCTGTATCGAACCGTGTGCGACCTTGT
AGAGCGGGAAACTGAAAGAAGGCCGTCAGGACCAATACGACTTCTGACTA
ATCCGCGAGTTTCAGGGATTGAGTTCAATCCAGTATCCTTTTACTACGTT
TTTGAACCTGATGGTACCACTCTTCAATGCGTAGTTGCAGAAGTGGGTAA
CTTTCCATGGTTTGAACAACATAACTATGTGGTAACAACAACAACATCTT
CCGCATTCAATACGAACAAGAAAGAGTTCCATGTTTCACCGTTCATGCAA
ATGGAAAACATAGCCTACGATTGGGTGTTTCACCCGCCTGCAGAGAACTT
AAGAGTTCGAATAGCGGTTTCCAAACAGCGTCAACATTTCTTCACAGCCA
CGCTTGATGCCCAAAAGATGGAATGGTCTCTGTTCAATTTGATTCGAATG
CAACTGCTATATCCTCTGCATTCTTTTCGCGTAATGATTGGAATTCTCTA
CGAAGCCGCAAAGCTTTTCCGAAGTGGTTTTGCTTTCCATCCACACCCAG
ATGGTACCCAAACAAAATTTTCTCGAGCTGTTGAAGCCATTGTTGGTGCA
GTCAATGGCCTGCGATCTTTTTTGCAGAAACCATGCAGCATGTCCAGGAT
TGTTGGCAGGCAACATTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1971403..1972071-

>Gchil1717.t1 ID=Gchil1717.t1|Name=Gchil1717.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=669bp|location=Sequence derived from alignment at tig00004403_pilon:1971403..1972071- (Gracilaria chilensis NLEC103_M9 male)
ATGATTTGTGAGCGTCCTGGAGATCTGTATCGAACCGTGTGCGACCTTGT
AGAGCGGGAAACTGAAAGAAGGCCGTCAGGACCAATACGACTTCTGACTA
ATCCGCGAGTTTCAGGGATTGAGTTCAATCCAGTATCCTTTTACTACGTT
TTTGAACCTGATGGTACCACTCTTCAATGCGTAGTTGCAGAAGTGGGTAA
CTTTCCATGGTTTGAACAACATAACTATGTGGTAACAACAACAACATCTT
CCGCATTCAATACGAACAAGAAAGAGTTCCATGTTTCACCGTTCATGCAA
ATGGAAAACATAGCCTACGATTGGGTGTTTCACCCGCCTGCAGAGAACTT
AAGAGTTCGAATAGCGGTTTCCAAACAGCGTCAACATTTCTTCACAGCCA
CGCTTGATGCCCAAAAGATGGAATGGTCTCTGTTCAATTTGATTCGAATG
CAACTGCTATATCCTCTGCATTCTTTTCGCGTAATGATTGGAATTCTCTA
CGAAGCCGCAAAGCTTTTCCGAAGTGGTTTTGCTTTCCATCCACACCCAG
ATGGTACCCAAACAAAATTTTCTCGAGCTGTTGAAGCCATTGTTGGTGCA
GTCAATGGCCTGCGATCTTTTTTGCAGAAACCATGCAGCATGTCCAGGAT
TGTTGGCAGGCAACATTGA
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