Gchil1713.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1713.t1
Unique NameGchil1713.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1957855..1959337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706453.1
PFAMsQueuosine_synth
Max annot lvl2759|Eukaryota
KEGG koko:K07568
Evalue2.96e-96
EggNOG OGsCOG0809@1|root,2S12P@2759|Eukaryota
EC2.4.99.17
DescriptionQueuosine biosynthesis protein
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1713Gchil1713Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1957855..1959337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1713.t1Gchil1713.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1957855..1959337 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1713.t1.stop1Gchil1713.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1957855..1957857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1713.t1.CDS1Gchil1713.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1957855..1958041 -
Gchil1713.t1.CDS2Gchil1713.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1958145..1958398 -
Gchil1713.t1.CDS3Gchil1713.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1958471..1959337 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1713.t1.exon1Gchil1713.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1957855..1958041 -
Gchil1713.t1.exon2Gchil1713.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1958145..1958398 -
Gchil1713.t1.exon3Gchil1713.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1958471..1959337 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1713.t1.intron1Gchil1713.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1958042..1958144 -
Gchil1713.t1.intron2Gchil1713.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1958399..1958470 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1713.t1.start1Gchil1713.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1959335..1959337 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1713.t1 ID=Gchil1713.t1|Name=Gchil1713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=436bp
MSAPHFRTVSSALQRAQSLITKAFTYDLPQSQIATHPLPDRSSSKLLVVA
RGRQPSHAKFNELPNLLPKNSLLLLNSSRVIPARLRMRKPSGGKAEILLL
NHVTDTTAQAMHSPLHGQRWRALIGGKNIRVGHVLHLMNSSSCSQVEAHV
IERHQNHAVVDFQCPSRADSLRAVEFLNQEGSPPLPPYMKRPSIPQDTET
YQTVYASEHGSVAAPTAGLHITDNLLDDIQKKGIRTREIVLHIGIGTFQQ
IETPIAGTHDMHEESLSVSGRVIAEIWAQLRNRAPIVAVGTTCVRTVESL
YWFGVRLIHQPEQNNSHLAVGQWEPYEVVDKIGITRLPDPEEALGAVLDW
CGGSKGYVHGRTKLMIVPGYPRKMIDALITNFHQPRSTLLMLVSAFHGGE
PDELVSLYQHALEHKYRFLSYGDSSIYATPEFFEN*
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spliced messenger RNA

>Gchil1713.t1 ID=Gchil1713.t1|Name=Gchil1713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at tig00004403_pilon:1957855..1959337- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCACCGCATTTCAGAACAGTGTCATCGGCCCTGCAGCGCGCGCA
GTCCTTGATCACCAAGGCTTTCACCTACGACCTTCCACAGTCTCAAATCG
CCACTCACCCTCTACCGGATCGCTCATCATCAAAACTTCTTGTAGTTGCG
CGCGGTCGACAACCATCACACGCCAAGTTCAATGAGCTTCCGAATCTTCT
GCCAAAAAACTCTCTATTGCTTCTGAACTCGAGTCGAGTGATTCCAGCGA
GACTACGAATGCGAAAGCCATCTGGGGGAAAGGCTGAGATACTACTACTC
AATCATGTTACAGACACAACGGCGCAAGCAATGCATTCCCCACTTCACGG
CCAACGCTGGCGCGCCTTGATCGGCGGAAAGAACATTCGAGTGGGACATG
TTTTGCACCTTATGAATAGTTCATCATGTAGCCAGGTTGAAGCTCATGTA
ATTGAGCGCCATCAGAATCATGCTGTTGTAGATTTTCAGTGTCCATCGCG
AGCTGATTCGCTTCGAGCTGTCGAATTCCTGAATCAGGAAGGCAGTCCAC
CCTTGCCGCCTTATATGAAGCGCCCATCGATTCCGCAAGACACTGAAACT
TATCAAACTGTGTATGCATCGGAGCATGGCTCTGTGGCCGCTCCGACAGC
CGGGCTGCATATCACCGACAATCTGCTCGACGATATCCAAAAAAAGGGGA
TACGTACCAGAGAAATTGTGTTGCACATCGGGATCGGTACTTTTCAACAA
ATCGAAACCCCAATCGCTGGAACCCATGACATGCACGAAGAATCTCTGTC
TGTCTCTGGACGGGTAATCGCGGAAATTTGGGCCCAGTTACGCAATAGAG
CTCCCATCGTTGCGGTGGGCACAACATGCGTGCGAACTGTGGAAAGCCTG
TACTGGTTTGGAGTGCGGCTGATCCATCAACCAGAACAGAACAACTCTCA
TTTGGCTGTTGGGCAGTGGGAGCCGTACGAGGTGGTGGACAAAATTGGCA
TAACACGTCTCCCTGATCCTGAGGAAGCATTAGGAGCGGTGCTCGATTGG
TGTGGGGGATCGAAAGGATACGTTCATGGCCGAACGAAGCTAATGATTGT
TCCTGGATATCCACGCAAGATGATTGACGCTTTGATCACAAATTTTCACC
AACCACGATCGACGCTTTTGATGCTTGTTTCCGCCTTTCATGGCGGAGAG
CCAGATGAGCTTGTCTCTCTCTATCAGCACGCTCTCGAACACAAGTACAG
GTTTCTCAGCTACGGAGACAGCTCTATTTACGCGACGCCGGAATTCTTCG
AAAATTAA
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protein sequence of Gchil1713.t1

>Gchil1713.t1 ID=Gchil1713.t1|Name=Gchil1713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=436bp
MSAPHFRTVSSALQRAQSLITKAFTYDLPQSQIATHPLPDRSSSKLLVVA
RGRQPSHAKFNELPNLLPKNSLLLLNSSRVIPARLRMRKPSGGKAEILLL
NHVTDTTAQAMHSPLHGQRWRALIGGKNIRVGHVLHLMNSSSCSQVEAHV
IERHQNHAVVDFQCPSRADSLRAVEFLNQEGSPPLPPYMKRPSIPQDTET
YQTVYASEHGSVAAPTAGLHITDNLLDDIQKKGIRTREIVLHIGIGTFQQ
IETPIAGTHDMHEESLSVSGRVIAEIWAQLRNRAPIVAVGTTCVRTVESL
YWFGVRLIHQPEQNNSHLAVGQWEPYEVVDKIGITRLPDPEEALGAVLDW
CGGSKGYVHGRTKLMIVPGYPRKMIDALITNFHQPRSTLLMLVSAFHGGE
PDELVSLYQHALEHKYRFLSYGDSSIYATPEFFEN*
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mRNA from alignment at tig00004403_pilon:1957855..1959337-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1713.t1 ID=Gchil1713.t1|Name=Gchil1713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1483bp|location=Sequence derived from alignment at tig00004403_pilon:1957855..1959337- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCACCGCATTTCAGAACAGTGTCATCGGCCCTGCAGCGCGCGCA
GTCCTTGATCACCAAGGCTTTCACCTACGACCTTCCACAGTCTCAAATCG
CCACTCACCCTCTACCGGATCGCTCATCATCAAAACTTCTTGTAGTTGCG
CGCGGTCGACAACCATCACACGCCAAGTTCAATGAGCTTCCGAATCTTCT
GCCAAAAAACTCTCTATTGCTTCTGAACTCGAGTCGAGTGATTCCAGCGA
GACTACGAATGCGAAAGCCATCTGGGGGAAAGGCTGAGATACTACTACTC
AATCATGTTACAGACACAACGGCGCAAGCAATGCATTCCCCACTTCACGG
CCAACGCTGGCGCGCCTTGATCGGCGGAAAGAACATTCGAGTGGGACATG
TTTTGCACCTTATGAATAGTTCATCATGTAGCCAGGTTGAAGCTCATGTA
ATTGAGCGCCATCAGAATCATGCTGTTGTAGATTTTCAGTGTCCATCGCG
AGCTGATTCGCTTCGAGCTGTCGAATTCCTGAATCAGGAAGGCAGTCCAC
CCTTGCCGCCTTATATGAAGCGCCCATCGATTCCGCAAGACACTGAAACT
TATCAAACTGTGTATGCATCGGAGCATGGCTCTGTGGCCGCTCCGACAGC
CGGGCTGCATATCACCGACAATCTGCTCGACGATATCCAAAAAAAGGGGA
TACGTACCAGAGAAATTGTGTTGCACATCGGGATCGGTACTTTTCAACAA
ATCGAAACCCCAATCGCTGGAACCCATGACATGCACGAAGAATCTCTGTC
TGTCTCTGGACGGGTAATCGCGGAAATTTGGGCCCAGTTACGCAATAGAG
CTCCCATCGTTGCGGTGGTGCGTTCATGAATCCTGTACCCGACTGTTTAC
TCTTACACGACTGACCATATTCTTCTCATGTCAATGAAGGGCACAACATG
CGTGCGAACTGTGGAAAGCCTGTACTGGTTTGGAGTGCGGCTGATCCATC
AACCAGAACAGAACAACTCTCATTTGGCTGTTGGGCAGTGGGAGCCGTAC
GAGGTGGTGGACAAAATTGGCATAACACGTCTCCCTGATCCTGAGGAAGC
ATTAGGAGCGGTGCTCGATTGGTGTGGGGGATCGAAAGGATACGTTCATG
GCCGAACGAAGCTAATGATTGTTCCTGGATATCCACGCAAGATGTAAGAT
TAATCTACTGTGCATTTTGGTCGCGTGGCGTGACGATGAGGAGTGAATGT
ATCACTGACCGTTTTCACACCCTTTGACGCCGAATTGCTACTGAAGGATT
GACGCTTTGATCACAAATTTTCACCAACCACGATCGACGCTTTTGATGCT
TGTTTCCGCCTTTCATGGCGGAGAGCCAGATGAGCTTGTCTCTCTCTATC
AGCACGCTCTCGAACACAAGTACAGGTTTCTCAGCTACGGAGACAGCTCT
ATTTACGCGACGCCGGAATTCTTCGAAAATTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1957855..1959337-

>Gchil1713.t1 ID=Gchil1713.t1|Name=Gchil1713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1308bp|location=Sequence derived from alignment at tig00004403_pilon:1957855..1959337- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCACCGCATTTCAGAACAGTGTCATCGGCCCTGCAGCGCGCGCA
GTCCTTGATCACCAAGGCTTTCACCTACGACCTTCCACAGTCTCAAATCG
CCACTCACCCTCTACCGGATCGCTCATCATCAAAACTTCTTGTAGTTGCG
CGCGGTCGACAACCATCACACGCCAAGTTCAATGAGCTTCCGAATCTTCT
GCCAAAAAACTCTCTATTGCTTCTGAACTCGAGTCGAGTGATTCCAGCGA
GACTACGAATGCGAAAGCCATCTGGGGGAAAGGCTGAGATACTACTACTC
AATCATGTTACAGACACAACGGCGCAAGCAATGCATTCCCCACTTCACGG
CCAACGCTGGCGCGCCTTGATCGGCGGAAAGAACATTCGAGTGGGACATG
TTTTGCACCTTATGAATAGTTCATCATGTAGCCAGGTTGAAGCTCATGTA
ATTGAGCGCCATCAGAATCATGCTGTTGTAGATTTTCAGTGTCCATCGCG
AGCTGATTCGCTTCGAGCTGTCGAATTCCTGAATCAGGAAGGCAGTCCAC
CCTTGCCGCCTTATATGAAGCGCCCATCGATTCCGCAAGACACTGAAACT
TATCAAACTGTGTATGCATCGGAGCATGGCTCTGTGGCCGCTCCGACAGC
CGGGCTGCATATCACCGACAATCTGCTCGACGATATCCAAAAAAAGGGGA
TACGTACCAGAGAAATTGTGTTGCACATCGGGATCGGTACTTTTCAACAA
ATCGAAACCCCAATCGCTGGAACCCATGACATGCACGAAGAATCTCTGTC
TGTCTCTGGACGGGTAATCGCGGAAATTTGGGCCCAGTTACGCAATAGAG
CTCCCATCGTTGCGGTGGGCACAACATGCGTGCGAACTGTGGAAAGCCTG
TACTGGTTTGGAGTGCGGCTGATCCATCAACCAGAACAGAACAACTCTCA
TTTGGCTGTTGGGCAGTGGGAGCCGTACGAGGTGGTGGACAAAATTGGCA
TAACACGTCTCCCTGATCCTGAGGAAGCATTAGGAGCGGTGCTCGATTGG
TGTGGGGGATCGAAAGGATACGTTCATGGCCGAACGAAGCTAATGATTGT
TCCTGGATATCCACGCAAGATGATTGACGCTTTGATCACAAATTTTCACC
AACCACGATCGACGCTTTTGATGCTTGTTTCCGCCTTTCATGGCGGAGAG
CCAGATGAGCTTGTCTCTCTCTATCAGCACGCTCTCGAACACAAGTACAG
GTTTCTCAGCTACGGAGACAGCTCTATTTACGCGACGCCGGAATTCTTCG
AAAATTAA
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