Gchil1712.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1712.t1
Unique NameGchil1712.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1956410..1957696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog160860.XP_007356854.1
Preferred nameFPR3
PFAMsFKBP_C
Max annot lvl4751|Fungi
KEGG koko:K14826
GOsGO:0000003,GO:0000075,GO:0000412,GO:0000413,GO:0000414,GO:0000415,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006457,GO:0006464,GO:0006807,GO:0006996,GO:0007049,GO:0008144,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0016043,GO:0016569,GO:0016570,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022607,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0033043,GO:0033044,GO:0033313,GO:0034622,GO:0034728,GO:0036211,GO:0040020,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045835,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0061077,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1902275,GO:1903046,GO:1905268,GO:2000241,GO:2000242,GO:2001251
Evalue9.11e-09
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota,38CQE@33154|Opisthokonta,3NVTP@4751|Fungi,3V0UI@5204|Basidiomycota,227AS@155619|Agaricomycetes,3H174@355688|Agaricomycetes incertae sedis
EC5.2.1.8
DescriptionFKBP-type peptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1712Gchil1712Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1956410..1957696 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1712.t1.start1Gchil1712.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1956410..1956412 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1712.t1.CDS1Gchil1712.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1956410..1957696 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1712.t1.exon1Gchil1712.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1956410..1957696 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1712.t1.stop1Gchil1712.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1957694..1957696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1712.t1Gchil1712.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1956410..1957696 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1712.t1 ID=Gchil1712.t1|Name=Gchil1712.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=429bp
MDAEKVAFWGIVLKPGEPADLDLDDGETLRVTTASYGEDLSDSSGRSVIT
ASIRPDDDSSPRKFAVAVLSAGKTETVTMDVAFVGEENVSFEVSGKNAVH
LVGNFSFENDLDDEDSEDENEENHLIGLYEDTMSSESEEDAEDGKVKALP
EKDKPIITELPDEDDEDDDEDEDDEVEEHPVEVKKSPVVSKKKGKKGKMA
NGESARPTKKVANASAEPLSKPEKKVTEDVGKNQHTASQKKSGKGKKKKS
GHKHEVNTDVQPSGGSANDGGNVDMKNDGGDVDMKDDGKRSAKVPKKLKS
KSAADDVKMPPKDDDDAVEIVTKGIEEENVAPSSKKDKKRRRKQSVTVNV
PEQAPTPPSAKKTKISERIATPAPSRMTRQGAASERTPKPNGSADANGVQ
GAKDSGTKTPPTDAPSSKRRRRTRKNKA*
back to top

spliced messenger RNA

>Gchil1712.t1 ID=Gchil1712.t1|Name=Gchil1712.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00004403_pilon:1956410..1957696+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAGAGAAAGTTGCCTTCTGGGGCATTGTGCTCAAGCCCGGGGA
GCCAGCCGATCTAGACTTAGACGACGGAGAAACACTCAGAGTCACCACTG
CTTCTTATGGTGAGGATCTCAGTGATAGTTCAGGCCGATCTGTGATCACT
GCATCGATTCGTCCCGATGATGATTCCTCACCTAGGAAGTTTGCTGTGGC
GGTGCTCTCGGCAGGGAAGACAGAAACCGTCACTATGGATGTTGCTTTCG
TTGGAGAGGAAAACGTCAGCTTCGAAGTGAGTGGAAAGAATGCTGTTCAC
CTTGTCGGTAACTTTTCCTTCGAGAATGACCTCGATGACGAAGATTCAGA
AGATGAAAACGAGGAGAATCATCTCATTGGACTCTACGAAGATACAATGT
CTTCAGAAAGTGAAGAAGACGCTGAAGACGGAAAAGTAAAGGCCCTTCCA
GAAAAAGACAAGCCTATCATCACAGAGCTACCGgatgaagatgacgagga
tgatgacgaagacgaggatgatgaGGTAGAAGAACATCCTGTAGAAGTTA
AAAAATCACCCGTTGTTTCCAAAAAGAAGGGCAAGAAAGGAAAGATGGCG
AATGGTGAATCTGCACGTCCTACAAAAAAGGTGGCGAATGCTTCGGCAGA
GCCATTATCTAAACCAGAGAAAAAGGTCACAGAGGACGTAGGGAAAAATC
AGCATACTGCGTCTCAAAAGAAAAGCGGAAAAGGTAAGAAGAAAAAGTCG
GGACACAAACACGAGGTGAATACTGATGTACAGCCGTCTGGTGGTTCGGC
AAATGATGGGGGTAATGTGGACATGAAAAATGATGGGGGTGATGTGGACA
TGAAAGATGATGGCAAGCGTAGTGCCAAGGTTCCCAAGAAACTTAAAAGC
AAATCTGCTGCTGATGATGTGAAGATGCCTCCGAAGGATGACGATGACGC
AGTCGAAATAGTTACGAAAGGCATTGAGGAGGAAAACGTCGCGCCATCCT
CTAAAAAAGACAAGAAGAGGCGCCGTAAGCAAAGTGTCACCGTCAACGTT
CCGGAGCAGGCACCGACACCACCCTCAGCGAAAAAGACGAAAATAAGCGA
GCGAATCGCTACTCCTGCACCGTCTAGGATGACGAGACAAGGCGCAGCAT
CCGAGCGCACGCCAAAGCCAAATGGAAGTGCAGATGCAAACGGAGTTCAA
GGGGCGAAAGATAGCGGAACCAAGACACCGCCAACTGACGCTCCGTCTTC
CAAGCGACGAAGGCGGACAAGAAAGAATAAGGCTTAA
back to top

protein sequence of Gchil1712.t1

>Gchil1712.t1 ID=Gchil1712.t1|Name=Gchil1712.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=429bp
MDAEKVAFWGIVLKPGEPADLDLDDGETLRVTTASYGEDLSDSSGRSVIT
ASIRPDDDSSPRKFAVAVLSAGKTETVTMDVAFVGEENVSFEVSGKNAVH
LVGNFSFENDLDDEDSEDENEENHLIGLYEDTMSSESEEDAEDGKVKALP
EKDKPIITELPDEDDEDDDEDEDDEVEEHPVEVKKSPVVSKKKGKKGKMA
NGESARPTKKVANASAEPLSKPEKKVTEDVGKNQHTASQKKSGKGKKKKS
GHKHEVNTDVQPSGGSANDGGNVDMKNDGGDVDMKDDGKRSAKVPKKLKS
KSAADDVKMPPKDDDDAVEIVTKGIEEENVAPSSKKDKKRRRKQSVTVNV
PEQAPTPPSAKKTKISERIATPAPSRMTRQGAASERTPKPNGSADANGVQ
GAKDSGTKTPPTDAPSSKRRRRTRKNKA*
back to top

mRNA from alignment at tig00004403_pilon:1956410..1957696+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1712.t1 ID=Gchil1712.t1|Name=Gchil1712.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00004403_pilon:1956410..1957696+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCAGAGAAAGTTGCCTTCTGGGGCATTGTGCTCAAGCCCGGGGA
GCCAGCCGATCTAGACTTAGACGACGGAGAAACACTCAGAGTCACCACTG
CTTCTTATGGTGAGGATCTCAGTGATAGTTCAGGCCGATCTGTGATCACT
GCATCGATTCGTCCCGATGATGATTCCTCACCTAGGAAGTTTGCTGTGGC
GGTGCTCTCGGCAGGGAAGACAGAAACCGTCACTATGGATGTTGCTTTCG
TTGGAGAGGAAAACGTCAGCTTCGAAGTGAGTGGAAAGAATGCTGTTCAC
CTTGTCGGTAACTTTTCCTTCGAGAATGACCTCGATGACGAAGATTCAGA
AGATGAAAACGAGGAGAATCATCTCATTGGACTCTACGAAGATACAATGT
CTTCAGAAAGTGAAGAAGACGCTGAAGACGGAAAAGTAAAGGCCCTTCCA
GAAAAAGACAAGCCTATCATCACAGAGCTACCGgatgaagatgacgagga
tgatgacgaagacgaggatgatgaGGTAGAAGAACATCCTGTAGAAGTTA
AAAAATCACCCGTTGTTTCCAAAAAGAAGGGCAAGAAAGGAAAGATGGCG
AATGGTGAATCTGCACGTCCTACAAAAAAGGTGGCGAATGCTTCGGCAGA
GCCATTATCTAAACCAGAGAAAAAGGTCACAGAGGACGTAGGGAAAAATC
AGCATACTGCGTCTCAAAAGAAAAGCGGAAAAGGTAAGAAGAAAAAGTCG
GGACACAAACACGAGGTGAATACTGATGTACAGCCGTCTGGTGGTTCGGC
AAATGATGGGGGTAATGTGGACATGAAAAATGATGGGGGTGATGTGGACA
TGAAAGATGATGGCAAGCGTAGTGCCAAGGTTCCCAAGAAACTTAAAAGC
AAATCTGCTGCTGATGATGTGAAGATGCCTCCGAAGGATGACGATGACGC
AGTCGAAATAGTTACGAAAGGCATTGAGGAGGAAAACGTCGCGCCATCCT
CTAAAAAAGACAAGAAGAGGCGCCGTAAGCAAAGTGTCACCGTCAACGTT
CCGGAGCAGGCACCGACACCACCCTCAGCGAAAAAGACGAAAATAAGCGA
GCGAATCGCTACTCCTGCACCGTCTAGGATGACGAGACAAGGCGCAGCAT
CCGAGCGCACGCCAAAGCCAAATGGAAGTGCAGATGCAAACGGAGTTCAA
GGGGCGAAAGATAGCGGAACCAAGACACCGCCAACTGACGCTCCGTCTTC
CAAGCGACGAAGGCGGACAAGAAAGAATAAGGCTTAA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1956410..1957696+

>Gchil1712.t1 ID=Gchil1712.t1|Name=Gchil1712.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00004403_pilon:1956410..1957696+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCAGAGAAAGTTGCCTTCTGGGGCATTGTGCTCAAGCCCGGGGA
GCCAGCCGATCTAGACTTAGACGACGGAGAAACACTCAGAGTCACCACTG
CTTCTTATGGTGAGGATCTCAGTGATAGTTCAGGCCGATCTGTGATCACT
GCATCGATTCGTCCCGATGATGATTCCTCACCTAGGAAGTTTGCTGTGGC
GGTGCTCTCGGCAGGGAAGACAGAAACCGTCACTATGGATGTTGCTTTCG
TTGGAGAGGAAAACGTCAGCTTCGAAGTGAGTGGAAAGAATGCTGTTCAC
CTTGTCGGTAACTTTTCCTTCGAGAATGACCTCGATGACGAAGATTCAGA
AGATGAAAACGAGGAGAATCATCTCATTGGACTCTACGAAGATACAATGT
CTTCAGAAAGTGAAGAAGACGCTGAAGACGGAAAAGTAAAGGCCCTTCCA
GAAAAAGACAAGCCTATCATCACAGAGCTACCGgatgaagatgacgagga
tgatgacgaagacgaggatgatgaGGTAGAAGAACATCCTGTAGAAGTTA
AAAAATCACCCGTTGTTTCCAAAAAGAAGGGCAAGAAAGGAAAGATGGCG
AATGGTGAATCTGCACGTCCTACAAAAAAGGTGGCGAATGCTTCGGCAGA
GCCATTATCTAAACCAGAGAAAAAGGTCACAGAGGACGTAGGGAAAAATC
AGCATACTGCGTCTCAAAAGAAAAGCGGAAAAGGTAAGAAGAAAAAGTCG
GGACACAAACACGAGGTGAATACTGATGTACAGCCGTCTGGTGGTTCGGC
AAATGATGGGGGTAATGTGGACATGAAAAATGATGGGGGTGATGTGGACA
TGAAAGATGATGGCAAGCGTAGTGCCAAGGTTCCCAAGAAACTTAAAAGC
AAATCTGCTGCTGATGATGTGAAGATGCCTCCGAAGGATGACGATGACGC
AGTCGAAATAGTTACGAAAGGCATTGAGGAGGAAAACGTCGCGCCATCCT
CTAAAAAAGACAAGAAGAGGCGCCGTAAGCAAAGTGTCACCGTCAACGTT
CCGGAGCAGGCACCGACACCACCCTCAGCGAAAAAGACGAAAATAAGCGA
GCGAATCGCTACTCCTGCACCGTCTAGGATGACGAGACAAGGCGCAGCAT
CCGAGCGCACGCCAAAGCCAAATGGAAGTGCAGATGCAAACGGAGTTCAA
GGGGCGAAAGATAGCGGAACCAAGACACCGCCAACTGACGCTCCGTCTTC
CAAGCGACGAAGGCGGACAAGAAAGAATAAGGCTTAA
back to top