Gchil1708.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1708.t1
Unique NameGchil1708.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length458
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1941661..1943034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707849.1
PFAMsGST_N_3
Max annot lvl2759|Eukaryota
KEGG koko:K03354
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Evalue1.27e-92
EggNOG OGs28NCX@1|root,2QUYC@2759|Eukaryota
DescriptionGlutathione S-transferase, N-terminal domain
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1708Gchil1708Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1941661..1943034 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1708.t1.start1Gchil1708.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1941661..1941663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1708.t1.CDS1Gchil1708.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1941661..1943034 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1708.t1.exon1Gchil1708.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1941661..1943034 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1708.t1.stop1Gchil1708.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1943032..1943034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1708.t1Gchil1708.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1941661..1943034 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1708.t1 ID=Gchil1708.t1|Name=Gchil1708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=458bp
MQVPAVPLVPLDASEPIAAACLVSNASQRYGVSLQILQNPPATHSARFVP
SRGSHQPRQSLQRATSFRKVFAPQSGRTPRSPFSTMAFVTSVPVLTTRRR
AAASTKRYASPVAIAKKPEPPKDFSPPSPRPFYVRPDRAIDIAQASASQL
LRTYAGAFVEGYRLKSEDGKLVEYSATLPKSKPDIPLRLFEFEACPFCRK
VREAVSILDLDVLVFPCPKGGVLYRQFVKQIGGKTQFPYLQDPNTEFSGY
ESDDIIKYLYKTYGPSNARIPFVLSNAGTFSAGLAATLRRGRGRARSPKT
VPAAEPLELWGYEASPFVRLVRETLADLELPYYLHTTARGSVKRAELKEL
VGRFQVPYLVDPNTDIAMFESAEICEYLRATYGADAAGAVKEPEAGTAFM
PGDPWYKEPADEQTAEPQVKAAPVPEQSLNPQVETDEVLEQYCEQNPDSD
ECRVYED*
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spliced messenger RNA

>Gchil1708.t1 ID=Gchil1708.t1|Name=Gchil1708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00004403_pilon:1941661..1943034+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTGCCCGCCGTACCTTTGGTACCTCTAGATGCGTCAGAGCCAAT
TGCTGCGGCGTGTTTGGTCAGCAACGCCTCCCAGCGATACGGCGTTTCGC
TCCAGATTTTGCAGAATCCACCAGCCACTCATAGCGCCCGCTTCGTCCCC
TCGCGTGGCTCACACCAACCTCGTCAAAGCCTGCAACGAGCAACTTCTTT
TAGAAAAGTCTTCGCCCCGCAATCTGGCAGAACTCCTCGCTCACCATTCT
CTACCATGGCCTTCGTCACAAGTGTGCCTGTGCTCACAACTCGCAGAAGG
GCTGCAGCGAGTACGAAACGCTACGCGTCTCCGGTAGCCATCGCGAAGAA
GCCCGAGCCTCCGAAAGACTTTTCACCACCCAGCCCGCGCCCATTTTACG
TTCGTCCCGACAGGGCGATTGACATAGCTCAGGCAAGCGCTAGTCAGCTT
CTTAGAACCTATGCCGGAGCATTCGTGGAGGGCTACCGTCTGAAATCTGA
AGATGGAAAACTCGTTGAGTATTCAGCAACGCTTCCAAAGTCAAAACCAG
ACATTCCGTTGCGACTCTTCGAATTTGAGGCCTGCCCGTTTTGCAGAAAG
GTTCGGGAGGCCGTTTCCATTCTCGATCTGGATGTGCTCGTCTTCCCCTG
TCCAAAGGGAGGTGTTCTGTATCGCCAGTTTGTCAAGCAAATCGGTGGAA
AAACGCAGTTCCCGTATCTGCAAGATCCCAACACCGAATTTTCTGGCTAC
GAATCAGATGACATCATCAAGTACTTGTACAAGACTTACGGACCGTCCAA
TGCGCGCATTCCATTTGTTCTCAGCAATGCCGGTACTTTTTCTGCGGGGC
TCGCCGCTACATTGCGAAGGGGACGTGGCCGAGCTCGCAGCCCCAAGACG
GTACCGGCTGCCGAACCGCTTGAGCTCTGGGGGTACGAGGCATCCCCTTT
TGTCCGCCTTGTACGCGAAACGCTTGCTGATCTGGAACTGCCGTATTATC
TGCATACCACGGCAAGGGGCTCGGTGAAGAGGGCTGAGTTGAAAGAGTTG
GTCGGAAGGTTCCAGGTGCCGTACCTAGTGGACCCCAACACCGATATTGC
CATGTTCGAAAGTGCTGAAATTTGTGAGTATCTGCGCGCAACCTACGGTG
CTGACGCCGCTGGCGCGGTCAAAGAACCGGAGGCTGGTACTGCGTTCATG
CCTGGGGATCCATGGTATAAAGAACCTGCTGATGAGCAAACAGCGGAGCC
CCAAGTCAAAGCGGCACCAGTTCCTGAGCAATCGCTAAATCCTCAGGTCG
AGACTGACGAGGTACTTGAGCAATACTGCGAGCAAAATCCAGACAGCGAC
GAATGTCGTGTGTATGAAGATTAG
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protein sequence of Gchil1708.t1

>Gchil1708.t1 ID=Gchil1708.t1|Name=Gchil1708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=458bp
MQVPAVPLVPLDASEPIAAACLVSNASQRYGVSLQILQNPPATHSARFVP
SRGSHQPRQSLQRATSFRKVFAPQSGRTPRSPFSTMAFVTSVPVLTTRRR
AAASTKRYASPVAIAKKPEPPKDFSPPSPRPFYVRPDRAIDIAQASASQL
LRTYAGAFVEGYRLKSEDGKLVEYSATLPKSKPDIPLRLFEFEACPFCRK
VREAVSILDLDVLVFPCPKGGVLYRQFVKQIGGKTQFPYLQDPNTEFSGY
ESDDIIKYLYKTYGPSNARIPFVLSNAGTFSAGLAATLRRGRGRARSPKT
VPAAEPLELWGYEASPFVRLVRETLADLELPYYLHTTARGSVKRAELKEL
VGRFQVPYLVDPNTDIAMFESAEICEYLRATYGADAAGAVKEPEAGTAFM
PGDPWYKEPADEQTAEPQVKAAPVPEQSLNPQVETDEVLEQYCEQNPDSD
ECRVYED*
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mRNA from alignment at tig00004403_pilon:1941661..1943034+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1708.t1 ID=Gchil1708.t1|Name=Gchil1708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00004403_pilon:1941661..1943034+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTGCCCGCCGTACCTTTGGTACCTCTAGATGCGTCAGAGCCAAT
TGCTGCGGCGTGTTTGGTCAGCAACGCCTCCCAGCGATACGGCGTTTCGC
TCCAGATTTTGCAGAATCCACCAGCCACTCATAGCGCCCGCTTCGTCCCC
TCGCGTGGCTCACACCAACCTCGTCAAAGCCTGCAACGAGCAACTTCTTT
TAGAAAAGTCTTCGCCCCGCAATCTGGCAGAACTCCTCGCTCACCATTCT
CTACCATGGCCTTCGTCACAAGTGTGCCTGTGCTCACAACTCGCAGAAGG
GCTGCAGCGAGTACGAAACGCTACGCGTCTCCGGTAGCCATCGCGAAGAA
GCCCGAGCCTCCGAAAGACTTTTCACCACCCAGCCCGCGCCCATTTTACG
TTCGTCCCGACAGGGCGATTGACATAGCTCAGGCAAGCGCTAGTCAGCTT
CTTAGAACCTATGCCGGAGCATTCGTGGAGGGCTACCGTCTGAAATCTGA
AGATGGAAAACTCGTTGAGTATTCAGCAACGCTTCCAAAGTCAAAACCAG
ACATTCCGTTGCGACTCTTCGAATTTGAGGCCTGCCCGTTTTGCAGAAAG
GTTCGGGAGGCCGTTTCCATTCTCGATCTGGATGTGCTCGTCTTCCCCTG
TCCAAAGGGAGGTGTTCTGTATCGCCAGTTTGTCAAGCAAATCGGTGGAA
AAACGCAGTTCCCGTATCTGCAAGATCCCAACACCGAATTTTCTGGCTAC
GAATCAGATGACATCATCAAGTACTTGTACAAGACTTACGGACCGTCCAA
TGCGCGCATTCCATTTGTTCTCAGCAATGCCGGTACTTTTTCTGCGGGGC
TCGCCGCTACATTGCGAAGGGGACGTGGCCGAGCTCGCAGCCCCAAGACG
GTACCGGCTGCCGAACCGCTTGAGCTCTGGGGGTACGAGGCATCCCCTTT
TGTCCGCCTTGTACGCGAAACGCTTGCTGATCTGGAACTGCCGTATTATC
TGCATACCACGGCAAGGGGCTCGGTGAAGAGGGCTGAGTTGAAAGAGTTG
GTCGGAAGGTTCCAGGTGCCGTACCTAGTGGACCCCAACACCGATATTGC
CATGTTCGAAAGTGCTGAAATTTGTGAGTATCTGCGCGCAACCTACGGTG
CTGACGCCGCTGGCGCGGTCAAAGAACCGGAGGCTGGTACTGCGTTCATG
CCTGGGGATCCATGGTATAAAGAACCTGCTGATGAGCAAACAGCGGAGCC
CCAAGTCAAAGCGGCACCAGTTCCTGAGCAATCGCTAAATCCTCAGGTCG
AGACTGACGAGGTACTTGAGCAATACTGCGAGCAAAATCCAGACAGCGAC
GAATGTCGTGTGTATGAAGATTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1941661..1943034+

>Gchil1708.t1 ID=Gchil1708.t1|Name=Gchil1708.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1374bp|location=Sequence derived from alignment at tig00004403_pilon:1941661..1943034+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTGCCCGCCGTACCTTTGGTACCTCTAGATGCGTCAGAGCCAAT
TGCTGCGGCGTGTTTGGTCAGCAACGCCTCCCAGCGATACGGCGTTTCGC
TCCAGATTTTGCAGAATCCACCAGCCACTCATAGCGCCCGCTTCGTCCCC
TCGCGTGGCTCACACCAACCTCGTCAAAGCCTGCAACGAGCAACTTCTTT
TAGAAAAGTCTTCGCCCCGCAATCTGGCAGAACTCCTCGCTCACCATTCT
CTACCATGGCCTTCGTCACAAGTGTGCCTGTGCTCACAACTCGCAGAAGG
GCTGCAGCGAGTACGAAACGCTACGCGTCTCCGGTAGCCATCGCGAAGAA
GCCCGAGCCTCCGAAAGACTTTTCACCACCCAGCCCGCGCCCATTTTACG
TTCGTCCCGACAGGGCGATTGACATAGCTCAGGCAAGCGCTAGTCAGCTT
CTTAGAACCTATGCCGGAGCATTCGTGGAGGGCTACCGTCTGAAATCTGA
AGATGGAAAACTCGTTGAGTATTCAGCAACGCTTCCAAAGTCAAAACCAG
ACATTCCGTTGCGACTCTTCGAATTTGAGGCCTGCCCGTTTTGCAGAAAG
GTTCGGGAGGCCGTTTCCATTCTCGATCTGGATGTGCTCGTCTTCCCCTG
TCCAAAGGGAGGTGTTCTGTATCGCCAGTTTGTCAAGCAAATCGGTGGAA
AAACGCAGTTCCCGTATCTGCAAGATCCCAACACCGAATTTTCTGGCTAC
GAATCAGATGACATCATCAAGTACTTGTACAAGACTTACGGACCGTCCAA
TGCGCGCATTCCATTTGTTCTCAGCAATGCCGGTACTTTTTCTGCGGGGC
TCGCCGCTACATTGCGAAGGGGACGTGGCCGAGCTCGCAGCCCCAAGACG
GTACCGGCTGCCGAACCGCTTGAGCTCTGGGGGTACGAGGCATCCCCTTT
TGTCCGCCTTGTACGCGAAACGCTTGCTGATCTGGAACTGCCGTATTATC
TGCATACCACGGCAAGGGGCTCGGTGAAGAGGGCTGAGTTGAAAGAGTTG
GTCGGAAGGTTCCAGGTGCCGTACCTAGTGGACCCCAACACCGATATTGC
CATGTTCGAAAGTGCTGAAATTTGTGAGTATCTGCGCGCAACCTACGGTG
CTGACGCCGCTGGCGCGGTCAAAGAACCGGAGGCTGGTACTGCGTTCATG
CCTGGGGATCCATGGTATAAAGAACCTGCTGATGAGCAAACAGCGGAGCC
CCAAGTCAAAGCGGCACCAGTTCCTGAGCAATCGCTAAATCCTCAGGTCG
AGACTGACGAGGTACTTGAGCAATACTGCGAGCAAAATCCAGACAGCGAC
GAATGTCGTGTGTATGAAGATTAG
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