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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4537.OPUNC06G21970.1 |
| PFAMs | Myb_DNA-binding |
| Max annot lvl | 35493|Streptophyta |
| Evalue | 3.78e-29 |
| EggNOG OGs | KOG0724@1|root,KOG0724@2759|Eukaryota,37MTA@33090|Viridiplantae,3GDH5@35493|Streptophyta,3KYQ9@4447|Liliopsida,3I2G7@38820|Poales |
| Description | SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains |
| COG category | K |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil1700.t1 ID=Gchil1700.t1|Name=Gchil1700.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=856bp MHPSYSVQHASALTYSYPPMHTTPLPSIKSPPQHPYPHPSVPYQLHQHHI VHHPTLPPQSQPQPQSQLPPPPPPQSAHPPASTPVQCASLPPRLAPPAVA PSIPTASCQLQQPPLATPPPPLATKPPAAPISAPSKSKPAGDNQTPSKAT SPTALSTTPARKPRKPYTMTKTRELWSPEEHARFVHALKLYDRDWKKIET YIGSKTVLQIRSHAQKHFGKVTKYKTGEYIPPPRPKKRAAMPYPRTRNPN ASKHAPPSSGTASESGNGSENGTANGTISNANISDRCPPVPNGSLRHPQL VTPQQVALAPAPPTANSKRWVPNGNIAVENADHPSDTSSLYRTIPAVKSR DERGVAHIHNLVDPPRSNPCEPGLGLHTREDFRASDERHPPVEPAPSSHE PANRFAACGDELRLHNGVVNTTRQQSDASNPNSSLHVLSNCVDMMTRDAL PKRQPAAGWASAAAARRAHRAKVVRACKSSSPLSPMRKKEDFAKFETPGG TRGSVAASCMHPHTQTLTSADAGRKNGVLTSELSNTANNLVQKRERSPPI PQMSEEGERVNRPDPQRSSANSSDGNNDTNGDFNESNRPSASDTGNGLSS GGSGTGISPDNSDSGDAEVDPQCSNDGSGDDGNRIRLLNGDFPLTEQISS NSSGNSLKGGSSRSPSLVNPSTAIGQSERASHAARIDVQNQGHQNSTTGM SRTKAEMYESKQCIGTKTEVVQNGKKVNSSHQRHTVSATFRKSVYINGEE KERAGTSVAKQRNGYHANKMILHVNHDLSQHKSVVRYVGAPDVGAKRLRS PSTTEVAGRNEIQNAEGRERKAQRIRQVGESQSLKAKFIGNKDIIRPTLS DARRR* back to topspliced messenger RNA >Gchil1700.t1 ID=Gchil1700.t1|Name=Gchil1700.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2568bp|location=Sequence derived from alignment at tig00004403_pilon:1829295..1831862- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCACCCGTCCTACTCCGTGCAGCACGCCTCGGCCCTCACCTACTCCTA CCCTCCTATGCACACCACCCCGCTACCTTCCATCAAGTCCCCACCGCAAC ACCCTTACCCACACCCATCCGTTCCATACCAACTCCATCAACACCACATC GTACACCATCCCACCCTGCCACCGCAGTCGCAACCGCAACCACAATCGCA ACTGCCGCCGCCGCCGCCGCCCCAGTCCGCCCATCCACCCGCTTCTACAC CAGTCCAGTGTGCCTCCTTGCCCCCGCGCCTCGCTCCGCCTGCCGTCGCC CCGTCGATTCCCACCGCGTCCTGCCAGTTGCAACAACCGCCGCTCGCCAC GCCACCACCCCCCCTCGCGACCAAACCGCCCGCGGCTCCCATTTCCGCCC CGTCCAAGTCCAAGCCCGCCGGGGACAATCAGACGCCGTCCAAAGCCACC AGCCCCACCGCCCTTTCCACCACACCCGCCCGCAAGCCGCGAAAACCCTA CACCATGACAAAGACGCGAGAGCTGTGGTCCCCCGAAGAGCACGCCCGCT TCGTCCACGCTCTCAAGTTGTACGACAGAGACTGGAAAAAGATAGAGACA TACATTGGCTCTAAGACCGTCTTGCAGATCCGCTCACACGCTCAAAAACA CTTTGGAAAGGTTACCAAGTACAAGACTGGGGAGTACATCCCACCGCCGC GACCTAAAAAACGCGCCGCTATGCCGTATCCAAGAACGCGAAACCCCAAT GCTTCAAAACATGCACCACCGTCCAGTGGTACTGCTAGTGAAAGCGGTAA TGGCAGCGAAAATGGTACCGCCAATGGAACCATCTCAAATGCCAACATCT CAGATCGCTGTCCCCCCGTGCCAAACGGATCACTCCGACATCCACAACTT GTCACGCCTCAGCAAGTTGCCCTCGCTCCTGCTCCTCCCACAGCCAACAG CAAACGATGGGTTCCCAACGGCAACATTGCCGTGGAGAACGCCGATCATC CGAGCGACACGTCCTCCCTGTACAGAACAATTCCAGCCGTCAAATCGCGT GACGAACGGGGTGTTGCACATATTCATAACCTCGTTGATCCGCCGCGCTC AAATCCATGCGAGCCCGGATTGGGCTTGCATACCCGTGAGGACTTTCGTG CCTCTGATGAGCGGCATCCGCCAGTCGAGCCTGCCCCGTCGTCACACGAG CCAGCGAATCGTTTCGCTGCTTGTGGTGATGAACTGCGACTGCACAACGG CGTCGTTAACACAACCAGGCAACAGTCTGATGCGTCAAATCCAAACAGTT CGCTGCACGTCCTATCAAACTGCGTTGACATGATGACCAGAGATGCTCTA CCAAAGCGTCAACCCGCTGCTGGATGGGCTTCCGCTGCAGCTGCCCGAAG AGCTCATCGCGCAAAAGTGGTGCGTGCTTGCAAGAGCTCGAGCCCGCTTT CGCCCATGCGAAAGAAGGAAGACTTCGCCAAGTTCGAAACGCCTGGTGGA ACGCGTGGCTCGGTAGCTGCTAGTTGCATGCATCCTCATACGCAGACATT GACTTCCGCCGACGCTGGCAGAAAGAATGGTGTTTTGACGAGTGAACTTT CAAACACCGCAAACAATTTGGTGCAGAAACGAGAACGCAGCCCGCCCATC CCTCAGATGAGCGAGGAAGGAGAGCGTGTCAATAGGCCAGATCCCCAGAG AAGCTCGGCCAATTCTTCAGATGGAAATAATGATACCAACGGCGACTTTA ATGAAAGCAATCGCCCTTCGGCCAGCGACACAGGAAACGGCTTGTCGTCT GGTGGAAGCGGTACCGGTATCAGCCCTGACAACAGTGACAGTGGTGATGC TGAAGTGGATCCGCAGTGTAGCAACGACGGAAGTGGGGATGATGGGAACA GAATACGTCTCTTAAACGGTGACTTTCCTCTTACGGAGCAAATTTCGTCT AATTCGAGTGGAAACTCGCTCAAGGGGGGGTCTTCAAGGAGCCCATCGTT GGTAAACCCGAGCACAGCGATCGGGCAAAGTGAACGTGCCAGCCACGCAG CAAGAATCGATGTGCAGAACCAAGGGCATCAAAACTCAACCACAGGAATG AGCAGGACTAAGGCAGAGATGTATGAGTCCAAACAATGCATCGGAACAAA GACGGAAGTTGTGCAAAATGGGAAGAAAGTGAACAGCTCTCATCAGAGGC ATACTGTCTCAGCTACGTTCCGCAAATCAGTGTATATAAACGGAGAAGAA AAAGAGAGAGCGGGAACAAGTGTTGCAAAACAAAGGAATGGCTATCACGC GAATAAGATGATACTTCATGTGAACCACGACTTATCCCAGCACAAAAGTG TTGTGAGGTACGTAGGTGCTCCAGATGTTGGGGCGAAGAGACTTCGGAGT CCTTCCACAACTGAAGTAGCCGGTCGCAATGAAATTCAGAACGCAGAAGG AAGAGAACGCAAAGCACAGCGAATACGACAGGTGGGTGAGTCGCAATCGC TGAAAGCAAAGTTCATAGGAAACAAAGACATAATAAGACCAACACTAAGC GATGCTCGGCGGCGGTAG back to topprotein sequence of Gchil1700.t1 >Gchil1700.t1 ID=Gchil1700.t1|Name=Gchil1700.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=856bp
MHPSYSVQHASALTYSYPPMHTTPLPSIKSPPQHPYPHPSVPYQLHQHHI VHHPTLPPQSQPQPQSQLPPPPPPQSAHPPASTPVQCASLPPRLAPPAVA PSIPTASCQLQQPPLATPPPPLATKPPAAPISAPSKSKPAGDNQTPSKAT SPTALSTTPARKPRKPYTMTKTRELWSPEEHARFVHALKLYDRDWKKIET YIGSKTVLQIRSHAQKHFGKVTKYKTGEYIPPPRPKKRAAMPYPRTRNPN ASKHAPPSSGTASESGNGSENGTANGTISNANISDRCPPVPNGSLRHPQL VTPQQVALAPAPPTANSKRWVPNGNIAVENADHPSDTSSLYRTIPAVKSR DERGVAHIHNLVDPPRSNPCEPGLGLHTREDFRASDERHPPVEPAPSSHE PANRFAACGDELRLHNGVVNTTRQQSDASNPNSSLHVLSNCVDMMTRDAL PKRQPAAGWASAAAARRAHRAKVVRACKSSSPLSPMRKKEDFAKFETPGG TRGSVAASCMHPHTQTLTSADAGRKNGVLTSELSNTANNLVQKRERSPPI PQMSEEGERVNRPDPQRSSANSSDGNNDTNGDFNESNRPSASDTGNGLSS GGSGTGISPDNSDSGDAEVDPQCSNDGSGDDGNRIRLLNGDFPLTEQISS NSSGNSLKGGSSRSPSLVNPSTAIGQSERASHAARIDVQNQGHQNSTTGM SRTKAEMYESKQCIGTKTEVVQNGKKVNSSHQRHTVSATFRKSVYINGEE KERAGTSVAKQRNGYHANKMILHVNHDLSQHKSVVRYVGAPDVGAKRLRS PSTTEVAGRNEIQNAEGRERKAQRIRQVGESQSLKAKFIGNKDIIRPTLS DARRR* back to topmRNA from alignment at tig00004403_pilon:1829295..1831862- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil1700.t1 ID=Gchil1700.t1|Name=Gchil1700.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2568bp|location=Sequence derived from alignment at tig00004403_pilon:1829295..1831862- (Gracilaria chilensis NLEC103_M9 male) ATGCACCCGTCCTACTCCGTGCAGCACGCCTCGGCCCTCACCTACTCCTA
CCCTCCTATGCACACCACCCCGCTACCTTCCATCAAGTCCCCACCGCAAC
ACCCTTACCCACACCCATCCGTTCCATACCAACTCCATCAACACCACATC
GTACACCATCCCACCCTGCCACCGCAGTCGCAACCGCAACCACAATCGCA
ACTGCCGCCGCCGCCGCCGCCCCAGTCCGCCCATCCACCCGCTTCTACAC
CAGTCCAGTGTGCCTCCTTGCCCCCGCGCCTCGCTCCGCCTGCCGTCGCC
CCGTCGATTCCCACCGCGTCCTGCCAGTTGCAACAACCGCCGCTCGCCAC
GCCACCACCCCCCCTCGCGACCAAACCGCCCGCGGCTCCCATTTCCGCCC
CGTCCAAGTCCAAGCCCGCCGGGGACAATCAGACGCCGTCCAAAGCCACC
AGCCCCACCGCCCTTTCCACCACACCCGCCCGCAAGCCGCGAAAACCCTA
CACCATGACAAAGACGCGAGAGCTGTGGTCCCCCGAAGAGCACGCCCGCT
TCGTCCACGCTCTCAAGTTGTACGACAGAGACTGGAAAAAGATAGAGACA
TACATTGGCTCTAAGACCGTCTTGCAGATCCGCTCACACGCTCAAAAACA
CTTTGGAAAGGTTACCAAGTACAAGACTGGGGAGTACATCCCACCGCCGC
GACCTAAAAAACGCGCCGCTATGCCGTATCCAAGAACGCGAAACCCCAAT
GCTTCAAAACATGCACCACCGTCCAGTGGTACTGCTAGTGAAAGCGGTAA
TGGCAGCGAAAATGGTACCGCCAATGGAACCATCTCAAATGCCAACATCT
CAGATCGCTGTCCCCCCGTGCCAAACGGATCACTCCGACATCCACAACTT
GTCACGCCTCAGCAAGTTGCCCTCGCTCCTGCTCCTCCCACAGCCAACAG
CAAACGATGGGTTCCCAACGGCAACATTGCCGTGGAGAACGCCGATCATC
CGAGCGACACGTCCTCCCTGTACAGAACAATTCCAGCCGTCAAATCGCGT
GACGAACGGGGTGTTGCACATATTCATAACCTCGTTGATCCGCCGCGCTC
AAATCCATGCGAGCCCGGATTGGGCTTGCATACCCGTGAGGACTTTCGTG
CCTCTGATGAGCGGCATCCGCCAGTCGAGCCTGCCCCGTCGTCACACGAG
CCAGCGAATCGTTTCGCTGCTTGTGGTGATGAACTGCGACTGCACAACGG
CGTCGTTAACACAACCAGGCAACAGTCTGATGCGTCAAATCCAAACAGTT
CGCTGCACGTCCTATCAAACTGCGTTGACATGATGACCAGAGATGCTCTA
CCAAAGCGTCAACCCGCTGCTGGATGGGCTTCCGCTGCAGCTGCCCGAAG
AGCTCATCGCGCAAAAGTGGTGCGTGCTTGCAAGAGCTCGAGCCCGCTTT
CGCCCATGCGAAAGAAGGAAGACTTCGCCAAGTTCGAAACGCCTGGTGGA
ACGCGTGGCTCGGTAGCTGCTAGTTGCATGCATCCTCATACGCAGACATT
GACTTCCGCCGACGCTGGCAGAAAGAATGGTGTTTTGACGAGTGAACTTT
CAAACACCGCAAACAATTTGGTGCAGAAACGAGAACGCAGCCCGCCCATC
CCTCAGATGAGCGAGGAAGGAGAGCGTGTCAATAGGCCAGATCCCCAGAG
AAGCTCGGCCAATTCTTCAGATGGAAATAATGATACCAACGGCGACTTTA
ATGAAAGCAATCGCCCTTCGGCCAGCGACACAGGAAACGGCTTGTCGTCT
GGTGGAAGCGGTACCGGTATCAGCCCTGACAACAGTGACAGTGGTGATGC
TGAAGTGGATCCGCAGTGTAGCAACGACGGAAGTGGGGATGATGGGAACA
GAATACGTCTCTTAAACGGTGACTTTCCTCTTACGGAGCAAATTTCGTCT
AATTCGAGTGGAAACTCGCTCAAGGGGGGGTCTTCAAGGAGCCCATCGTT
GGTAAACCCGAGCACAGCGATCGGGCAAAGTGAACGTGCCAGCCACGCAG
CAAGAATCGATGTGCAGAACCAAGGGCATCAAAACTCAACCACAGGAATG
AGCAGGACTAAGGCAGAGATGTATGAGTCCAAACAATGCATCGGAACAAA
GACGGAAGTTGTGCAAAATGGGAAGAAAGTGAACAGCTCTCATCAGAGGC
ATACTGTCTCAGCTACGTTCCGCAAATCAGTGTATATAAACGGAGAAGAA
AAAGAGAGAGCGGGAACAAGTGTTGCAAAACAAAGGAATGGCTATCACGC
GAATAAGATGATACTTCATGTGAACCACGACTTATCCCAGCACAAAAGTG
TTGTGAGGTACGTAGGTGCTCCAGATGTTGGGGCGAAGAGACTTCGGAGT
CCTTCCACAACTGAAGTAGCCGGTCGCAATGAAATTCAGAACGCAGAAGG
AAGAGAACGCAAAGCACAGCGAATACGACAGGTGGGTGAGTCGCAATCGC
TGAAAGCAAAGTTCATAGGAAACAAAGACATAATAAGACCAACACTAAGC
GATGCTCGGCGGCGGTAG back to topCoding sequence (CDS) from alignment at tig00004403_pilon:1829295..1831862- >Gchil1700.t1 ID=Gchil1700.t1|Name=Gchil1700.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2568bp|location=Sequence derived from alignment at tig00004403_pilon:1829295..1831862- (Gracilaria chilensis NLEC103_M9 male) ATGCACCCGTCCTACTCCGTGCAGCACGCCTCGGCCCTCACCTACTCCTA CCCTCCTATGCACACCACCCCGCTACCTTCCATCAAGTCCCCACCGCAAC ACCCTTACCCACACCCATCCGTTCCATACCAACTCCATCAACACCACATC GTACACCATCCCACCCTGCCACCGCAGTCGCAACCGCAACCACAATCGCA ACTGCCGCCGCCGCCGCCGCCCCAGTCCGCCCATCCACCCGCTTCTACAC CAGTCCAGTGTGCCTCCTTGCCCCCGCGCCTCGCTCCGCCTGCCGTCGCC CCGTCGATTCCCACCGCGTCCTGCCAGTTGCAACAACCGCCGCTCGCCAC GCCACCACCCCCCCTCGCGACCAAACCGCCCGCGGCTCCCATTTCCGCCC CGTCCAAGTCCAAGCCCGCCGGGGACAATCAGACGCCGTCCAAAGCCACC AGCCCCACCGCCCTTTCCACCACACCCGCCCGCAAGCCGCGAAAACCCTA CACCATGACAAAGACGCGAGAGCTGTGGTCCCCCGAAGAGCACGCCCGCT TCGTCCACGCTCTCAAGTTGTACGACAGAGACTGGAAAAAGATAGAGACA TACATTGGCTCTAAGACCGTCTTGCAGATCCGCTCACACGCTCAAAAACA CTTTGGAAAGGTTACCAAGTACAAGACTGGGGAGTACATCCCACCGCCGC GACCTAAAAAACGCGCCGCTATGCCGTATCCAAGAACGCGAAACCCCAAT GCTTCAAAACATGCACCACCGTCCAGTGGTACTGCTAGTGAAAGCGGTAA TGGCAGCGAAAATGGTACCGCCAATGGAACCATCTCAAATGCCAACATCT CAGATCGCTGTCCCCCCGTGCCAAACGGATCACTCCGACATCCACAACTT GTCACGCCTCAGCAAGTTGCCCTCGCTCCTGCTCCTCCCACAGCCAACAG CAAACGATGGGTTCCCAACGGCAACATTGCCGTGGAGAACGCCGATCATC CGAGCGACACGTCCTCCCTGTACAGAACAATTCCAGCCGTCAAATCGCGT GACGAACGGGGTGTTGCACATATTCATAACCTCGTTGATCCGCCGCGCTC AAATCCATGCGAGCCCGGATTGGGCTTGCATACCCGTGAGGACTTTCGTG CCTCTGATGAGCGGCATCCGCCAGTCGAGCCTGCCCCGTCGTCACACGAG CCAGCGAATCGTTTCGCTGCTTGTGGTGATGAACTGCGACTGCACAACGG CGTCGTTAACACAACCAGGCAACAGTCTGATGCGTCAAATCCAAACAGTT CGCTGCACGTCCTATCAAACTGCGTTGACATGATGACCAGAGATGCTCTA CCAAAGCGTCAACCCGCTGCTGGATGGGCTTCCGCTGCAGCTGCCCGAAG AGCTCATCGCGCAAAAGTGGTGCGTGCTTGCAAGAGCTCGAGCCCGCTTT CGCCCATGCGAAAGAAGGAAGACTTCGCCAAGTTCGAAACGCCTGGTGGA ACGCGTGGCTCGGTAGCTGCTAGTTGCATGCATCCTCATACGCAGACATT GACTTCCGCCGACGCTGGCAGAAAGAATGGTGTTTTGACGAGTGAACTTT CAAACACCGCAAACAATTTGGTGCAGAAACGAGAACGCAGCCCGCCCATC CCTCAGATGAGCGAGGAAGGAGAGCGTGTCAATAGGCCAGATCCCCAGAG AAGCTCGGCCAATTCTTCAGATGGAAATAATGATACCAACGGCGACTTTA ATGAAAGCAATCGCCCTTCGGCCAGCGACACAGGAAACGGCTTGTCGTCT GGTGGAAGCGGTACCGGTATCAGCCCTGACAACAGTGACAGTGGTGATGC TGAAGTGGATCCGCAGTGTAGCAACGACGGAAGTGGGGATGATGGGAACA GAATACGTCTCTTAAACGGTGACTTTCCTCTTACGGAGCAAATTTCGTCT AATTCGAGTGGAAACTCGCTCAAGGGGGGGTCTTCAAGGAGCCCATCGTT GGTAAACCCGAGCACAGCGATCGGGCAAAGTGAACGTGCCAGCCACGCAG CAAGAATCGATGTGCAGAACCAAGGGCATCAAAACTCAACCACAGGAATG AGCAGGACTAAGGCAGAGATGTATGAGTCCAAACAATGCATCGGAACAAA GACGGAAGTTGTGCAAAATGGGAAGAAAGTGAACAGCTCTCATCAGAGGC ATACTGTCTCAGCTACGTTCCGCAAATCAGTGTATATAAACGGAGAAGAA AAAGAGAGAGCGGGAACAAGTGTTGCAAAACAAAGGAATGGCTATCACGC GAATAAGATGATACTTCATGTGAACCACGACTTATCCCAGCACAAAAGTG TTGTGAGGTACGTAGGTGCTCCAGATGTTGGGGCGAAGAGACTTCGGAGT CCTTCCACAACTGAAGTAGCCGGTCGCAATGAAATTCAGAACGCAGAAGG AAGAGAACGCAAAGCACAGCGAATACGACAGGTGGGTGAGTCGCAATCGC TGAAAGCAAAGTTCATAGGAAACAAAGACATAATAAGACCAACACTAAGC GATGCTCGGCGGCGGTAG back to top
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