Gchil1699.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1699.t1
Unique NameGchil1699.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1827647..1828382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313612.L8106_14105
PFAMsDUF3067
Max annot lvl1117|Cyanobacteria
Evalue1.39e-19
EggNOG OGs2AH3C@1|root,317CS@2|Bacteria,1G6IY@1117|Cyanobacteria,1HBGX@1150|Oscillatoriales
DescriptionDomain of unknown function (DUF3067)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1699Gchil1699Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1827647..1828382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1699.t1Gchil1699.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1827647..1828382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1699.t1.stop1Gchil1699.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1827647..1827649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1699.t1.CDS1Gchil1699.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1827647..1827726 -
Gchil1699.t1.CDS2Gchil1699.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1827818..1827962 -
Gchil1699.t1.CDS3Gchil1699.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1828032..1828382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1699.t1.exon1Gchil1699.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1827647..1827726 -
Gchil1699.t1.exon2Gchil1699.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1827818..1827962 -
Gchil1699.t1.exon3Gchil1699.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1828032..1828382 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1699.t1.intron1Gchil1699.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1827727..1827817 -
Gchil1699.t1.intron2Gchil1699.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1827963..1828031 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1699.t1.start1Gchil1699.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1828380..1828382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1699.t1 ID=Gchil1699.t1|Name=Gchil1699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=192bp
MEPAAFAFAAAGSFVARYPPRSAVCTRRACDAKTVQPAVVRAAADEFDAE
EFKQKERQRVDQMRSRLEGLFGVDEEQPQSDVFETFDGEALRAVIRQRWG
VEYDVQPQKRGGRVYVQIMWRYFEQQSFYMDEYDFACHCEAVAQLLRQWD
AVDYFCDYIASTKKRPVVGITINIPIPGIDASVTAFEEMNT*
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spliced messenger RNA

>Gchil1699.t1 ID=Gchil1699.t1|Name=Gchil1699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00004403_pilon:1827647..1828382- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCTGCCGCGTTTGCCTTTGCGGCGGCCGGCTCGTTTGTAGCGCG
GTATCCCCCGCGCTCGGCGGTGTGCACCCGGCGTGCATGCGACGCGAAAA
CGGTCCAACCGGCCGTCGTTCGCGCCGCGGCGGATGAGTTTGACGCGGAG
GAGTTCAAACAGAAGGAGCGACAGAGAGTTGACCAGATGCGCTCTCGGTT
GGAGGGGCTGTTCGGTGTGGACGAGGAGCAACCTCAATCCGATGTTTTCG
AAACTTTTGACGGCGAGGCCTTGAGGGCTGTTATCAGACAACGCTGGGGT
GTCGAGTACGACGTTCAGCCGCAGAAGCGCGGTGGACGCGTTTATGTACA
GATTATGTGGAGATATTTTGAGCAGCAGAGCTTCTACATGGACGAATATG
ATTTCGCATGTCATTGTGAGGCGGTTGCCCAGCTGTTGCGCCAGTGGGAC
GCCGTAGACTATTTTTGTGACTACATTGCATCCACAAAGAAAAGACCTGT
GGTTGGTATTACCATCAACATTCCCATCCCTGGAATTGATGCATCAGTCA
CTGCCTTTGAGGAGATGAATACCTGA
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protein sequence of Gchil1699.t1

>Gchil1699.t1 ID=Gchil1699.t1|Name=Gchil1699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=192bp
MEPAAFAFAAAGSFVARYPPRSAVCTRRACDAKTVQPAVVRAAADEFDAE
EFKQKERQRVDQMRSRLEGLFGVDEEQPQSDVFETFDGEALRAVIRQRWG
VEYDVQPQKRGGRVYVQIMWRYFEQQSFYMDEYDFACHCEAVAQLLRQWD
AVDYFCDYIASTKKRPVVGITINIPIPGIDASVTAFEEMNT*
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mRNA from alignment at tig00004403_pilon:1827647..1828382-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1699.t1 ID=Gchil1699.t1|Name=Gchil1699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=736bp|location=Sequence derived from alignment at tig00004403_pilon:1827647..1828382- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCTGCCGCGTTTGCCTTTGCGGCGGCCGGCTCGTTTGTAGCGCG
GTATCCCCCGCGCTCGGCGGTGTGCACCCGGCGTGCATGCGACGCGAAAA
CGGTCCAACCGGCCGTCGTTCGCGCCGCGGCGGATGAGTTTGACGCGGAG
GAGTTCAAACAGAAGGAGCGACAGAGAGTTGACCAGATGCGCTCTCGGTT
GGAGGGGCTGTTCGGTGTGGACGAGGAGCAACCTCAATCCGATGTTTTCG
AAACTTTTGACGGCGAGGCCTTGAGGGCTGTTATCAGACAACGCTGGGGT
GTCGAGTACGACGTTCAGCCGCAGAAGCGCGGTGGACGCGTTTATGTACA
GGTATGTCTTGATATTTGTGTCTTGCGCCGGTTTGTCATCCCGATGTGTG
TGCTCACAGCATCTGTGTAGATTATGTGGAGATATTTTGAGCAGCAGAGC
TTCTACATGGACGAATATGATTTCGCATGTCATTGTGAGGCGGTTGCCCA
GCTGTTGCGCCAGTGGGACGCCGTAGACTATTTTTGTGACTACATTGCAT
CCACAAAGAAAAGACGTAAGTTTACACCATCTCCTCATTCGTCATGAATC
ATTCTCATCCGCTCAAGATGGCCAGTTGCTGACATTTTGTATCAATCTGT
GAACAGCTGTGGTTGGTATTACCATCAACATTCCCATCCCTGGAATTGAT
GCATCAGTCACTGCCTTTGAGGAGATGAATACCTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1827647..1828382-

>Gchil1699.t1 ID=Gchil1699.t1|Name=Gchil1699.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00004403_pilon:1827647..1828382- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCTGCCGCGTTTGCCTTTGCGGCGGCCGGCTCGTTTGTAGCGCG
GTATCCCCCGCGCTCGGCGGTGTGCACCCGGCGTGCATGCGACGCGAAAA
CGGTCCAACCGGCCGTCGTTCGCGCCGCGGCGGATGAGTTTGACGCGGAG
GAGTTCAAACAGAAGGAGCGACAGAGAGTTGACCAGATGCGCTCTCGGTT
GGAGGGGCTGTTCGGTGTGGACGAGGAGCAACCTCAATCCGATGTTTTCG
AAACTTTTGACGGCGAGGCCTTGAGGGCTGTTATCAGACAACGCTGGGGT
GTCGAGTACGACGTTCAGCCGCAGAAGCGCGGTGGACGCGTTTATGTACA
GATTATGTGGAGATATTTTGAGCAGCAGAGCTTCTACATGGACGAATATG
ATTTCGCATGTCATTGTGAGGCGGTTGCCCAGCTGTTGCGCCAGTGGGAC
GCCGTAGACTATTTTTGTGACTACATTGCATCCACAAAGAAAAGACCTGT
GGTTGGTATTACCATCAACATTCCCATCCCTGGAATTGATGCATCAGTCA
CTGCCTTTGAGGAGATGAATACCTGA
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