Gchil1697.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1697.t1
Unique Name	Gchil1697.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1822938..1824281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102107.XP_008234830.1
PFAMs	Herpes_UL52
Max annot lvl	35493\|Streptophyta
Evalue	1.1e-52
EggNOG OGs	28JNI@1\|root,2QS1Q@2759\|Eukaryota,37IPT@33090\|Viridiplantae,3G8XX@35493\|Streptophyta,4JIW1@91835\|fabids
Description	DNA-directed primase polymerase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1697	Gchil1697	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1822938..1824281 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1697.t1.start1	Gchil1697.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1822938..1822940 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1697.t1.CDS1	Gchil1697.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1822938..1824281 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1697.t1.exon1	Gchil1697.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1822938..1824281 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1697.t1.stop1	Gchil1697.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1824279..1824281 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1697.t1	Gchil1697.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1822938..1824281 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1822938..1824281+
coding sequence from alignment at tig00004403_pilon:1822938..1824281+

mRNA sequence

>Gchil1697.t1 ID=Gchil1697.t1|Name=Gchil1697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MSSPISTSKFYAHKPRFRYQFKSKKSFKQVLRAVRNDADILVNTFHTQLQ
AFDHADKAPMRVQVWSNEIDSSGKRRYLTASYDAFWRFYSRCIRRSNILH
FYEVIRSQRACKLYFDLEYKRAQNTCDSETMIDSLVEEVSKLANLSLQRH
SENVIELDSTTDIKFSRHLVFQDIAFYDNTQAGLFAQKVVDHLKERDENL
ILVNKDDTKVSFVDLSVYTKNRCFRILGSSKFGKSAHLLPFGHEGDRLSF
SKHYFMGSLVCSVMKGVPIRGNPTPLQTSLRVKVGLGQLSSTERRFEQNR
KSPHPSVDEYVLSIVEPHGGGIYGITIVGEHLLVYAIKGGYKYCANIGRH
HKSNNVLLLADMDNRTMYQKCFDPDCRGFRSPSWAMPVTVIEEINDDDLY
RLANEVEDLDGGLSDSALNAVIDGTSGQKGKSSPENMTINHHAHRRT*

spliced messenger RNA

>Gchil1697.t1 ID=Gchil1697.t1|Name=Gchil1697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004403_pilon:1822938..1824281+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTCCAATCTCAACGTCCAAGTTTTATGCTCACAAACCCCGCTT
TCGATACCAATTCAAATCGAAAAAATCTTTCAAGCAGGTGCTTCGCGCTG
TTCGAAATGACGCTGATATTCTGGTAAACACTTTTCACACACAGCTGCAA
GCGTTCGACCATGCCGATAAGGCCCCGATGCGCGTTCAGGTTTGGTCCAA
CGAGATTGACTCAAGTGGAAAAAGGCGATACCTGACTGCTTCTTACGATG
CGTTTTGGCGCTTCTACTCACGCTGCATACGAAGGTCCAACATCCTTCAC
TTCTATGAAGTTATTCGAAGCCAGCGCGCATGCAAACTTTATTTTGACTT
AGAGTACAAGCGTGCACAGAATACATGTGATTCTGAAACGATGATCGACA
GCCTCGTAGAAGAAGTGTCAAAGCTAGCCAACCTGAGCCTCCAAAGACAT
TCAGAAAATGTTATTGAGCTCGATTCAACGACGGATATTAAGTTTTCTCG
CCATCTTGTGTTTCAAGACATCGCGTTTTATGACAACACACAGGCCGGGC
TTTTTGCTCAAAAGGTCGTTGATCATTTGAAAGAACGAGACGAAAATCTG
ATTCTGGTAAACAAGGATGATACAAAGGTCTCGTTCGTTGACCTTAGCGT
ATATACTAAGAACAGGTGTTTTCGAATCCTTGGGAGCTCCAAATTTGGAA
AGTCCGCACATTTGCTTCCGTTTGGGCATGAGGGCGATCGATTATCGTTC
TCAAAGCACTACTTCATGGGCAGTCTGGTGTGTAGCGTGATGAAAGGAGT
CCCGATTCGAGGGAACCCGACTCCGTTGCAAACGAGTCTGAGAGTCAAAG
TAGGACTGGGACAATTATCTTCGACAGAAAGAAGGTTTGAGCAGAATCGT
AAATCGCCACATCCAAGTGTGGACGAGTATGTGCTTTCAATAGTTGAGCC
TCATGGTGGAGGAATTTATGGCATAACAATTGTAGGGGAACACTTGCTTG
TTTATGCCATCAAAGGCGGATACAAGTACTGTGCAAACATTGGAAGGCAT
CACAAGTCAAACAATGTTCTTCTTTTAGCTGATATGGATAATAGGACCAT
GTATCAAAAATGCTTTGACCCAGACTGTCGAGGTTTTCGTTCTCCAAGCT
GGGCAATGCCAGTCACAGTTATTGAGGAGATCAATGACGATGATTTGTAT
CGTTTAGCCAACGAAGTGGAGGATTTGGATGGGGGCTTAAGCGATAGTGC
ACTTAATGCAGTAATAGATGGCACTTCGGGGCAAAAGGGAAAAAGTAGTC
CAGAGAACATGACCATCAATCACCATGCGCACCGGCGCACATGA

protein sequence of Gchil1697.t1

>Gchil1697.t1 ID=Gchil1697.t1|Name=Gchil1697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MSSPISTSKFYAHKPRFRYQFKSKKSFKQVLRAVRNDADILVNTFHTQLQ
AFDHADKAPMRVQVWSNEIDSSGKRRYLTASYDAFWRFYSRCIRRSNILH
FYEVIRSQRACKLYFDLEYKRAQNTCDSETMIDSLVEEVSKLANLSLQRH
SENVIELDSTTDIKFSRHLVFQDIAFYDNTQAGLFAQKVVDHLKERDENL
ILVNKDDTKVSFVDLSVYTKNRCFRILGSSKFGKSAHLLPFGHEGDRLSF
SKHYFMGSLVCSVMKGVPIRGNPTPLQTSLRVKVGLGQLSSTERRFEQNR
KSPHPSVDEYVLSIVEPHGGGIYGITIVGEHLLVYAIKGGYKYCANIGRH
HKSNNVLLLADMDNRTMYQKCFDPDCRGFRSPSWAMPVTVIEEINDDDLY
RLANEVEDLDGGLSDSALNAVIDGTSGQKGKSSPENMTINHHAHRRT*

mRNA from alignment at tig00004403_pilon:1822938..1824281+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1697.t1 ID=Gchil1697.t1|Name=Gchil1697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00004403_pilon:1822938..1824281+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTCCAATCTCAACGTCCAAGTTTTATGCTCACAAACCCCGCTT
TCGATACCAATTCAAATCGAAAAAATCTTTCAAGCAGGTGCTTCGCGCTG
TTCGAAATGACGCTGATATTCTGGTAAACACTTTTCACACACAGCTGCAA
GCGTTCGACCATGCCGATAAGGCCCCGATGCGCGTTCAGGTTTGGTCCAA
CGAGATTGACTCAAGTGGAAAAAGGCGATACCTGACTGCTTCTTACGATG
CGTTTTGGCGCTTCTACTCACGCTGCATACGAAGGTCCAACATCCTTCAC
TTCTATGAAGTTATTCGAAGCCAGCGCGCATGCAAACTTTATTTTGACTT
AGAGTACAAGCGTGCACAGAATACATGTGATTCTGAAACGATGATCGACA
GCCTCGTAGAAGAAGTGTCAAAGCTAGCCAACCTGAGCCTCCAAAGACAT
TCAGAAAATGTTATTGAGCTCGATTCAACGACGGATATTAAGTTTTCTCG
CCATCTTGTGTTTCAAGACATCGCGTTTTATGACAACACACAGGCCGGGC
TTTTTGCTCAAAAGGTCGTTGATCATTTGAAAGAACGAGACGAAAATCTG
ATTCTGGTAAACAAGGATGATACAAAGGTCTCGTTCGTTGACCTTAGCGT
ATATACTAAGAACAGGTGTTTTCGAATCCTTGGGAGCTCCAAATTTGGAA
AGTCCGCACATTTGCTTCCGTTTGGGCATGAGGGCGATCGATTATCGTTC
TCAAAGCACTACTTCATGGGCAGTCTGGTGTGTAGCGTGATGAAAGGAGT
CCCGATTCGAGGGAACCCGACTCCGTTGCAAACGAGTCTGAGAGTCAAAG
TAGGACTGGGACAATTATCTTCGACAGAAAGAAGGTTTGAGCAGAATCGT
AAATCGCCACATCCAAGTGTGGACGAGTATGTGCTTTCAATAGTTGAGCC
TCATGGTGGAGGAATTTATGGCATAACAATTGTAGGGGAACACTTGCTTG
TTTATGCCATCAAAGGCGGATACAAGTACTGTGCAAACATTGGAAGGCAT
CACAAGTCAAACAATGTTCTTCTTTTAGCTGATATGGATAATAGGACCAT
GTATCAAAAATGCTTTGACCCAGACTGTCGAGGTTTTCGTTCTCCAAGCT
GGGCAATGCCAGTCACAGTTATTGAGGAGATCAATGACGATGATTTGTAT
CGTTTAGCCAACGAAGTGGAGGATTTGGATGGGGGCTTAAGCGATAGTGC
ACTTAATGCAGTAATAGATGGCACTTCGGGGCAAAAGGGAAAAAGTAGTC
CAGAGAACATGACCATCAATCACCATGCGCACCGGCGCACATGA

Coding sequence (CDS) from alignment at tig00004403_pilon:1822938..1824281+

>Gchil1697.t1 ID=Gchil1697.t1|Name=Gchil1697.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00004403_pilon:1822938..1824281+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTCCAATCTCAACGTCCAAGTTTTATGCTCACAAACCCCGCTT
TCGATACCAATTCAAATCGAAAAAATCTTTCAAGCAGGTGCTTCGCGCTG
TTCGAAATGACGCTGATATTCTGGTAAACACTTTTCACACACAGCTGCAA
GCGTTCGACCATGCCGATAAGGCCCCGATGCGCGTTCAGGTTTGGTCCAA
CGAGATTGACTCAAGTGGAAAAAGGCGATACCTGACTGCTTCTTACGATG
CGTTTTGGCGCTTCTACTCACGCTGCATACGAAGGTCCAACATCCTTCAC
TTCTATGAAGTTATTCGAAGCCAGCGCGCATGCAAACTTTATTTTGACTT
AGAGTACAAGCGTGCACAGAATACATGTGATTCTGAAACGATGATCGACA
GCCTCGTAGAAGAAGTGTCAAAGCTAGCCAACCTGAGCCTCCAAAGACAT
TCAGAAAATGTTATTGAGCTCGATTCAACGACGGATATTAAGTTTTCTCG
CCATCTTGTGTTTCAAGACATCGCGTTTTATGACAACACACAGGCCGGGC
TTTTTGCTCAAAAGGTCGTTGATCATTTGAAAGAACGAGACGAAAATCTG
ATTCTGGTAAACAAGGATGATACAAAGGTCTCGTTCGTTGACCTTAGCGT
ATATACTAAGAACAGGTGTTTTCGAATCCTTGGGAGCTCCAAATTTGGAA
AGTCCGCACATTTGCTTCCGTTTGGGCATGAGGGCGATCGATTATCGTTC
TCAAAGCACTACTTCATGGGCAGTCTGGTGTGTAGCGTGATGAAAGGAGT
CCCGATTCGAGGGAACCCGACTCCGTTGCAAACGAGTCTGAGAGTCAAAG
TAGGACTGGGACAATTATCTTCGACAGAAAGAAGGTTTGAGCAGAATCGT
AAATCGCCACATCCAAGTGTGGACGAGTATGTGCTTTCAATAGTTGAGCC
TCATGGTGGAGGAATTTATGGCATAACAATTGTAGGGGAACACTTGCTTG
TTTATGCCATCAAAGGCGGATACAAGTACTGTGCAAACATTGGAAGGCAT
CACAAGTCAAACAATGTTCTTCTTTTAGCTGATATGGATAATAGGACCAT
GTATCAAAAATGCTTTGACCCAGACTGTCGAGGTTTTCGTTCTCCAAGCT
GGGCAATGCCAGTCACAGTTATTGAGGAGATCAATGACGATGATTTGTAT
CGTTTAGCCAACGAAGTGGAGGATTTGGATGGGGGCTTAAGCGATAGTGC
ACTTAATGCAGTAATAGATGGCACTTCGGGGCAAAAGGGAAAAAGTAGTC
CAGAGAACATGACCATCAATCACCATGCGCACCGGCGCACATGA