Gchil1696.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1696.t1
Unique NameGchil1696.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1820210..1821751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX42097
Preferred nameLCYB
PFAMsLycopene_cycl
Max annot lvl2759|Eukaryota
KEGG rclassRC01004,RC01612,RC01964,RC02020,RC02021
KEGG koko:K06443,ko:K06444,ko:K14593
KEGG ReactionR03824,R04801,R05341,R06960,R06962,R06963,R07320,R07321,R07840,R07856
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009509,GO:0009536,GO:0009975,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016853,GO:0016860,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0045436,GO:0046148,GO:0071704,GO:1901576
Evalue1.43e-125
EggNOG OGs2CN09@1|root,2QT2F@2759|Eukaryota
EC5.3.99.8,5.5.1.18,5.5.1.19
Descriptiontetraterpenoid biosynthetic process
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1696Gchil1696Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1820210..1821751 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1696.t1.start1Gchil1696.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1820210..1820212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1696.t1.CDS1Gchil1696.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1820210..1821751 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1696.t1.exon1Gchil1696.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1820210..1821751 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1696.t1.stop1Gchil1696.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1821749..1821751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1696.t1Gchil1696.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1820210..1821751 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1696.t1 ID=Gchil1696.t1|Name=Gchil1696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=514bp
MAPTHAPTSMLAYAPAFALPSVLPRVHVSLSRSAIPARAPLRAATPRRRA
RGPVLTASPQSAAVRAAAPSTPSSPPSLYDVVVIGAGPAGLSLATALGER
ALRVLCTDANLHAPWPNNYGTWLDDLEPLGLQDCVSHVWPRTSVYVNRDG
LKRLLPRQYTRVDRQRLKARLLQRCASSGNVTLLADAVSSVQHESQGPSY
VQLQNNNPQQPVSHVAARLVVDATGHSLKFVDVKPGKVPGFQAAYGIECI
VSEKGYPYDTNEMLLMDYRDDHMQTSEDKRISLKQPTFLYVMPLDGGKGR
HVFFEETSLVASPAMDFDLLKQRLYKRLNYYGVQVESVIEEEFCLIPMGG
EKPDLDQRTIAFGGAAAFVHPATGYMIARALKLANQTAQIIVDQLEKGGN
PDHISIRIWKSIWNESRNHQRDFFSFGGEYLQHIDLQKTRDFFAAFFDLP
TEQWADFLSFKMMKPLERLLFGLGVFVRTSNSVRLSLMTDALTKGRLTLL
TSVLPLYQVDDEE*
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spliced messenger RNA

>Gchil1696.t1 ID=Gchil1696.t1|Name=Gchil1696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00004403_pilon:1820210..1821751+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCACCCACGCGCCCACCTCCATGCTCGCCTACGCGCCCGCTTT
CGCGCTGCCTAGCGTCCTTCCGCGCGTGCATGTTTCGCTCAGTCGATCAG
CGATTCCCGCGCGCGCCCCTTTGCGCGCCGCTACGCCACGCCGACGTGCA
CGCGGCCCGGTGCTGACAGCCTCACCGCAGTCAGCGGCTGTGCGCGCGGC
AGCGCCCTCCACACCGTCTTCGCCGCCGTCCTTGTACGACGTGGTCGTCA
TTGGCGCCGGTCCCGCCGGGCTTTCCCTCGCAACTGCGCTCGGCGAGCGC
GCGTTGCGCGTGCTGTGTACTGACGCTAACCTGCACGCCCCATGGCCAAA
TAACTACGGCACTTGGCTTGACGACCTTGAGCCACTTGGTTTGCAGGATT
GTGTGTCGCATGTGTGGCCTCGCACGTCTGTCTACGTCAATCGCGATGGG
CTCAAGCGGCTGCTTCCCCGCCAATACACCCGCGTAGACCGCCAGAGGCT
CAAGGCTCGCCTCCTTCAACGCTGTGCCAGCTCTGGTAATGTCACACTGC
TTGCCGATGCTGTCTCTTCTGTGCAACACGAGTCACAAGGTCCCAGTTAT
GTTCAGCTTCAAAATAACAACCCACAGCAGCCAGTAAGCCACGTTGCTGC
ACGTCTGGTGGTAGATGCCACCGGACACTCCCTCAAGTTCGTTGACGTGA
AGCCGGGCAAGGTCCCCGGCTTTCAGGCAGCCTACGGTATTGAATGCATT
GTCAGCGAAAAGGGCTATCCGTATGACACCAACGAGATGCTCCTTATGGA
CTACCGCGATGATCACATGCAAACCTCCGAAGACAAGCGCATCAGTCTCA
AACAGCCCACCTTTCTATATGTTATGCCTTTGGATGGCGGCAAGGGAAGG
CATGTGTTCTTCGAGGAAACGTCCTTAGTAGCCTCCCCAGCCATGGACTT
TGATCTTCTCAAACAGCGTTTGTACAAGCGACTCAACTACTACGGCGTAC
AGGTCGAAAGTGTCATTGAGGAAGAATTTTGCCTGATTCCTATGGGAGGT
GAGAAGCCTGACCTTGACCAACGCACCATTGCTTTTGGTGGCGCTGCAGC
GTTTGTGCATCCTGCCACCGGTTACATGATCGCGCGTGCGCTCAAACTTG
CCAATCAAACTGCCCAGATTATAGTGGATCAACTGGAAAAAGGAGGGAAT
CCCGATCACATTTCTATTCGCATTTGGAAAAGCATTTGGAACGAGAGCCG
AAACCACCAACGCGATTTCTTCAGCTTTGGCGGCGAGTACCTGCAGCATA
TTGACTTGCAAAAAACTCGAGATTTCTTCGCTGCTTTTTTCGATCTTCCT
ACCGAACAATGGGCAGACTTTCTATCTTTCAAGATGATGAAGCCGCTTGA
AAGGCTATTATTCGGTCTCGGTGTATTTGTGAGAACGAGCAATAGTGTCC
GCTTATCCTTAATGACGGACGCCTTGACTAAAGGAAGGCTTACATTGCTT
ACATCCGTGCTTCCCTTGTACCAAGTCGATGATGAAGAATAG
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protein sequence of Gchil1696.t1

>Gchil1696.t1 ID=Gchil1696.t1|Name=Gchil1696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=514bp
MAPTHAPTSMLAYAPAFALPSVLPRVHVSLSRSAIPARAPLRAATPRRRA
RGPVLTASPQSAAVRAAAPSTPSSPPSLYDVVVIGAGPAGLSLATALGER
ALRVLCTDANLHAPWPNNYGTWLDDLEPLGLQDCVSHVWPRTSVYVNRDG
LKRLLPRQYTRVDRQRLKARLLQRCASSGNVTLLADAVSSVQHESQGPSY
VQLQNNNPQQPVSHVAARLVVDATGHSLKFVDVKPGKVPGFQAAYGIECI
VSEKGYPYDTNEMLLMDYRDDHMQTSEDKRISLKQPTFLYVMPLDGGKGR
HVFFEETSLVASPAMDFDLLKQRLYKRLNYYGVQVESVIEEEFCLIPMGG
EKPDLDQRTIAFGGAAAFVHPATGYMIARALKLANQTAQIIVDQLEKGGN
PDHISIRIWKSIWNESRNHQRDFFSFGGEYLQHIDLQKTRDFFAAFFDLP
TEQWADFLSFKMMKPLERLLFGLGVFVRTSNSVRLSLMTDALTKGRLTLL
TSVLPLYQVDDEE*
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mRNA from alignment at tig00004403_pilon:1820210..1821751+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1696.t1 ID=Gchil1696.t1|Name=Gchil1696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at tig00004403_pilon:1820210..1821751+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCACCCACGCGCCCACCTCCATGCTCGCCTACGCGCCCGCTTT
CGCGCTGCCTAGCGTCCTTCCGCGCGTGCATGTTTCGCTCAGTCGATCAG
CGATTCCCGCGCGCGCCCCTTTGCGCGCCGCTACGCCACGCCGACGTGCA
CGCGGCCCGGTGCTGACAGCCTCACCGCAGTCAGCGGCTGTGCGCGCGGC
AGCGCCCTCCACACCGTCTTCGCCGCCGTCCTTGTACGACGTGGTCGTCA
TTGGCGCCGGTCCCGCCGGGCTTTCCCTCGCAACTGCGCTCGGCGAGCGC
GCGTTGCGCGTGCTGTGTACTGACGCTAACCTGCACGCCCCATGGCCAAA
TAACTACGGCACTTGGCTTGACGACCTTGAGCCACTTGGTTTGCAGGATT
GTGTGTCGCATGTGTGGCCTCGCACGTCTGTCTACGTCAATCGCGATGGG
CTCAAGCGGCTGCTTCCCCGCCAATACACCCGCGTAGACCGCCAGAGGCT
CAAGGCTCGCCTCCTTCAACGCTGTGCCAGCTCTGGTAATGTCACACTGC
TTGCCGATGCTGTCTCTTCTGTGCAACACGAGTCACAAGGTCCCAGTTAT
GTTCAGCTTCAAAATAACAACCCACAGCAGCCAGTAAGCCACGTTGCTGC
ACGTCTGGTGGTAGATGCCACCGGACACTCCCTCAAGTTCGTTGACGTGA
AGCCGGGCAAGGTCCCCGGCTTTCAGGCAGCCTACGGTATTGAATGCATT
GTCAGCGAAAAGGGCTATCCGTATGACACCAACGAGATGCTCCTTATGGA
CTACCGCGATGATCACATGCAAACCTCCGAAGACAAGCGCATCAGTCTCA
AACAGCCCACCTTTCTATATGTTATGCCTTTGGATGGCGGCAAGGGAAGG
CATGTGTTCTTCGAGGAAACGTCCTTAGTAGCCTCCCCAGCCATGGACTT
TGATCTTCTCAAACAGCGTTTGTACAAGCGACTCAACTACTACGGCGTAC
AGGTCGAAAGTGTCATTGAGGAAGAATTTTGCCTGATTCCTATGGGAGGT
GAGAAGCCTGACCTTGACCAACGCACCATTGCTTTTGGTGGCGCTGCAGC
GTTTGTGCATCCTGCCACCGGTTACATGATCGCGCGTGCGCTCAAACTTG
CCAATCAAACTGCCCAGATTATAGTGGATCAACTGGAAAAAGGAGGGAAT
CCCGATCACATTTCTATTCGCATTTGGAAAAGCATTTGGAACGAGAGCCG
AAACCACCAACGCGATTTCTTCAGCTTTGGCGGCGAGTACCTGCAGCATA
TTGACTTGCAAAAAACTCGAGATTTCTTCGCTGCTTTTTTCGATCTTCCT
ACCGAACAATGGGCAGACTTTCTATCTTTCAAGATGATGAAGCCGCTTGA
AAGGCTATTATTCGGTCTCGGTGTATTTGTGAGAACGAGCAATAGTGTCC
GCTTATCCTTAATGACGGACGCCTTGACTAAAGGAAGGCTTACATTGCTT
ACATCCGTGCTTCCCTTGTACCAAGTCGATGATGAAGAATAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1820210..1821751+

>Gchil1696.t1 ID=Gchil1696.t1|Name=Gchil1696.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1542bp|location=Sequence derived from alignment at tig00004403_pilon:1820210..1821751+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCACCCACGCGCCCACCTCCATGCTCGCCTACGCGCCCGCTTT
CGCGCTGCCTAGCGTCCTTCCGCGCGTGCATGTTTCGCTCAGTCGATCAG
CGATTCCCGCGCGCGCCCCTTTGCGCGCCGCTACGCCACGCCGACGTGCA
CGCGGCCCGGTGCTGACAGCCTCACCGCAGTCAGCGGCTGTGCGCGCGGC
AGCGCCCTCCACACCGTCTTCGCCGCCGTCCTTGTACGACGTGGTCGTCA
TTGGCGCCGGTCCCGCCGGGCTTTCCCTCGCAACTGCGCTCGGCGAGCGC
GCGTTGCGCGTGCTGTGTACTGACGCTAACCTGCACGCCCCATGGCCAAA
TAACTACGGCACTTGGCTTGACGACCTTGAGCCACTTGGTTTGCAGGATT
GTGTGTCGCATGTGTGGCCTCGCACGTCTGTCTACGTCAATCGCGATGGG
CTCAAGCGGCTGCTTCCCCGCCAATACACCCGCGTAGACCGCCAGAGGCT
CAAGGCTCGCCTCCTTCAACGCTGTGCCAGCTCTGGTAATGTCACACTGC
TTGCCGATGCTGTCTCTTCTGTGCAACACGAGTCACAAGGTCCCAGTTAT
GTTCAGCTTCAAAATAACAACCCACAGCAGCCAGTAAGCCACGTTGCTGC
ACGTCTGGTGGTAGATGCCACCGGACACTCCCTCAAGTTCGTTGACGTGA
AGCCGGGCAAGGTCCCCGGCTTTCAGGCAGCCTACGGTATTGAATGCATT
GTCAGCGAAAAGGGCTATCCGTATGACACCAACGAGATGCTCCTTATGGA
CTACCGCGATGATCACATGCAAACCTCCGAAGACAAGCGCATCAGTCTCA
AACAGCCCACCTTTCTATATGTTATGCCTTTGGATGGCGGCAAGGGAAGG
CATGTGTTCTTCGAGGAAACGTCCTTAGTAGCCTCCCCAGCCATGGACTT
TGATCTTCTCAAACAGCGTTTGTACAAGCGACTCAACTACTACGGCGTAC
AGGTCGAAAGTGTCATTGAGGAAGAATTTTGCCTGATTCCTATGGGAGGT
GAGAAGCCTGACCTTGACCAACGCACCATTGCTTTTGGTGGCGCTGCAGC
GTTTGTGCATCCTGCCACCGGTTACATGATCGCGCGTGCGCTCAAACTTG
CCAATCAAACTGCCCAGATTATAGTGGATCAACTGGAAAAAGGAGGGAAT
CCCGATCACATTTCTATTCGCATTTGGAAAAGCATTTGGAACGAGAGCCG
AAACCACCAACGCGATTTCTTCAGCTTTGGCGGCGAGTACCTGCAGCATA
TTGACTTGCAAAAAACTCGAGATTTCTTCGCTGCTTTTTTCGATCTTCCT
ACCGAACAATGGGCAGACTTTCTATCTTTCAAGATGATGAAGCCGCTTGA
AAGGCTATTATTCGGTCTCGGTGTATTTGTGAGAACGAGCAATAGTGTCC
GCTTATCCTTAATGACGGACGCCTTGACTAAAGGAAGGCTTACATTGCTT
ACATCCGTGCTTCCCTTGTACCAAGTCGATGATGAAGAATAG
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