Gchil1693.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1693.t1
Unique NameGchil1693.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1746389..1746721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4155.Migut.F01497.1.p
PFAMsHSP70
Max annot lvl35493|Streptophyta
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Evalue3.37e-41
EggNOG OGsCOG0443@1|root,KOG0101@2759|Eukaryota,37K68@33090|Viridiplantae,3GAQN@35493|Streptophyta,44IM8@71274|asterids
Descriptionheat shock protein 70
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1693Gchil1693Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1746389..1746721 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1693.t1.stop1Gchil1693.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1746389..1746391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1693.t1.CDS1Gchil1693.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1746389..1746721 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1693.t1.exon1Gchil1693.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1746389..1746721 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1693.t1.start1Gchil1693.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1746719..1746721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1693.t1Gchil1693.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1746389..1746721 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1693.t1 ID=Gchil1693.t1|Name=Gchil1693.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=111bp
MTILIKRNTTITIQKQQIFFTYADIKPDVLIQVYEGERSRTKHNNLLEKI
ELSGISPAPDGVPQIEVTFDIDASGTLNFSVEDKSTDKKNKVAITNDKCR
GNKEDIEKMI*
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spliced messenger RNA

>Gchil1693.t1 ID=Gchil1693.t1|Name=Gchil1693.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00004403_pilon:1746389..1746721- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTATTCTGATCAAGCGAAACACTACTATTACCATACAAAAACAGCA
GATCTTCTTCACTTACGCCGACATCAAGCCGGATGTGCTCATTCAGGTCT
ACGAAGGTGAACGTAGTCGCACCAAACACAACAATCTTCTCGAAAAGATC
GAGCTTTCTGGTATTTCTCCCGCACCTGATGGTGTTCCGCAAATCGAAGT
CACCTTCGATATTGACGCAAGCGGTACTTTGAATTTTAGTGTTGAAGATA
AGAGCACTGATAAAAAGAACAAGGTTGCAATCACTAATGACAAGTGTCGT
GGCAACAAGGAAGATATCGAGAAGATGATATAA
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protein sequence of Gchil1693.t1

>Gchil1693.t1 ID=Gchil1693.t1|Name=Gchil1693.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=111bp
MTILIKRNTTITIQKQQIFFTYADIKPDVLIQVYEGERSRTKHNNLLEKI
ELSGISPAPDGVPQIEVTFDIDASGTLNFSVEDKSTDKKNKVAITNDKCR
GNKEDIEKMI*
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mRNA from alignment at tig00004403_pilon:1746389..1746721-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1693.t1 ID=Gchil1693.t1|Name=Gchil1693.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00004403_pilon:1746389..1746721- (Gracilaria chilensis NLEC103_M9 male)
ATGACTATTCTGATCAAGCGAAACACTACTATTACCATACAAAAACAGCA
GATCTTCTTCACTTACGCCGACATCAAGCCGGATGTGCTCATTCAGGTCT
ACGAAGGTGAACGTAGTCGCACCAAACACAACAATCTTCTCGAAAAGATC
GAGCTTTCTGGTATTTCTCCCGCACCTGATGGTGTTCCGCAAATCGAAGT
CACCTTCGATATTGACGCAAGCGGTACTTTGAATTTTAGTGTTGAAGATA
AGAGCACTGATAAAAAGAACAAGGTTGCAATCACTAATGACAAGTGTCGT
GGCAACAAGGAAGATATCGAGAAGATGATATAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1746389..1746721-

>Gchil1693.t1 ID=Gchil1693.t1|Name=Gchil1693.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=333bp|location=Sequence derived from alignment at tig00004403_pilon:1746389..1746721- (Gracilaria chilensis NLEC103_M9 male)
ATGACTATTCTGATCAAGCGAAACACTACTATTACCATACAAAAACAGCA
GATCTTCTTCACTTACGCCGACATCAAGCCGGATGTGCTCATTCAGGTCT
ACGAAGGTGAACGTAGTCGCACCAAACACAACAATCTTCTCGAAAAGATC
GAGCTTTCTGGTATTTCTCCCGCACCTGATGGTGTTCCGCAAATCGAAGT
CACCTTCGATATTGACGCAAGCGGTACTTTGAATTTTAGTGTTGAAGATA
AGAGCACTGATAAAAAGAACAAGGTTGCAATCACTAATGACAAGTGTCGT
GGCAACAAGGAAGATATCGAGAAGATGATATAA
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