Gchil1688.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1688.t1
Unique Name	Gchil1688.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	688

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1725119..1727182 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1688	Gchil1688	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1725119..1727182 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1688.t1.start1	Gchil1688.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1725119..1725121 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1688.t1.CDS1	Gchil1688.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1725119..1727182 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1688.t1.exon1	Gchil1688.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1725119..1727182 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1688.t1.stop1	Gchil1688.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1727180..1727182 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1688.t1	Gchil1688.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1725119..1727182 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1725119..1727182+
coding sequence from alignment at tig00004403_pilon:1725119..1727182+

mRNA sequence

>Gchil1688.t1 ID=Gchil1688.t1|Name=Gchil1688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=688bp
MTLSADVTNANSYAACTALPSYLISGCCSAQHPSLLASLRPYSRPQRFSA
LEKSHSLAASASHATFSGVSGRTRSTLSCGNASTFVMSRYNDYDPRAPRR
SGGYGAAFDADQSRDRERSRDRSRDRGRRDRSRERDRGPRDEYSSSRAPI
PTIPASAAYDTYRPPSLPGKSSRSAYDTYRPGASSGSAYDTYRPPAASAS
ASAYDSYRPTRPPQRSASSAYDTYRPGARSNPPSSAYDTYRPPPRASAGS
AYNTYKPSDRAPPGSAYDTYRPGGGRDAPIAKENDYSAYETYRPPANPSK
EYIRKLEKYAGVSSAPAKERERSRDNRRSYDNESEESSDEEDEERSKSKR
KKASKKKKSRKSKNRKARSSDESEEEDDSDSESEVEDSVEDSSDTTSESD
DDSEEEDRRRKKSSKKKSKSKKSSGKKKKASKKNTKKTKKKKKKSDDSED
SSSSESEDESADETADISKAIVPINPGALGATAFGTDPNTFPDLMGGADF
GNTQEFAKEPTAADFANLPGEVPETQSQSMSLAGRFPQLGSAASTPFGAP
GMMANQGVMSQMGMGAPGMQGINPMNGSMGMGMGMQAPMGMSHTAGPGVM
GGSAQMMGGIGAMGSMQPSMAMGGGMGVPGAMGMPGAMGMPGAMGMPGAM
GMQGGMGSQMPMNGGTAQPDLMTPFAGMNLGGNQKTF*

spliced messenger RNA

>Gchil1688.t1 ID=Gchil1688.t1|Name=Gchil1688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00004403_pilon:1725119..1727182+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTGAGCGCCGACGTCACCAACGCAAATTCCTATGCCGCATGCAC
TGCATTGCCTTCGTACCTAATCAGCGGCTGCTGCTCCGCACAGCACCCCT
CCCTCCTGGCCTCCCTGCGCCCTTACTCCAGACCCCAACGTTTCTCCGCT
CTTGAGAAATCTCATTCTCTGGCTGCAAGCGCCTCTCACGCCACCTTCTC
CGGCGTTTCAGGCCGTACGCGGTCCACTCTCAGTTGCGGAAACGCTTCGA
CCTTCGTCATGTCGCGTTACAACGATTACGACCCGCGCGCGCCGCGCCGT
TCTGGAGGTTATGGTGCTGCATTTGACGCCGACCAAAGTCGCGACCGTGA
GCGCAGTCGAGACCGCAGTCGAGATCGCGGCCGTCGAGACCGCAGTCGTG
AGCGCGACCGAGGCCCGCGTGATGAGTATTCATCATCCCGTGCTCCAATC
CCGACCATTCCGGCCTCCGCTGCCTATGACACCTATCGTCCGCCGAGTCT
ACCAGGCAAGTCCTCGCGTTCTGCATACGACACCTATCGTCCAGGAGCTT
CATCGGGCTCTGCGTATGATACCTATCGCCCGCCGGCCGCCTCTGCCTCC
GCTTCGGCCTACGACTCTTACCGACCGACTAGGCCTCCGCAGCGTTCTGC
ATCAAGCGCGTATGACACATATCGACCGGGTGCTCGTTCCAATCCCCCCT
CTTCTGCGTACGATACCTATAGGCCTCCACCAAGGGCATCGGCCGGCAGT
GCTTACAACACCTACAAGCCCTCTGACAGAGCTCCTCCAGGAAGTGCATA
CGATACTTATAGACCTGGGGGCGGGCGTGATGCGCCGATAGCGAAGGAAA
ACGACTATAGCGCATACGAAACATATCGTCCACCAGCTAATCCATCGAAA
GAATATATAAGGAAACTTGAGAAGTACGCCGGCGTCTCATCAGCCCCTGC
AAAGGAGAGAGAACGAAGCCGTGACAATAGGCGAAGCTACGACAACGAGA
GCGAAGAAAGCTCGGATGAAGAAGATGAAGAAAGGTCCAAGTCCAAGAGA
AAGAAGGCCTCGAAGAAAAAGAAATCTCGTAAGAGCAAGAATAGGAAGGC
GCGGTCGAGTGACGAATCCGAAGAAGAGGATGATTCTGACTCTGAATCAG
AAGTTGAAGATTCTGTCGAGGATTCATCAGATACAACATCCGAATCAGAC
GACGACAGTGAGGAGGAAGACAGGAGAAGGAAGAAATCGTCCAAGAAAAA
GTCAAAGTCTAAGAAGTCTTCAGGgaagaagaagaaagcctccaaaaaaa
acactaagaaaacgaagaagaagaagaagaagaGCGATGATTCAGAAGAC
TCCAGTTCATCTGAAAGCGAAGATGAAAGCGCCGATGAAACAGCAGATAT
ATCTAAAGCAATAGTTCCAATTAACCCAGGCGCCTTGGGTGCAACTGCTT
TTGGCACAGACCCAAACACGTTTCCTGACTTAATGGGTGGAGCAGACTTT
GGCAATACACAAGAATTCGCGAAGGAACCAACTGCAGCAGATTTCGCAAA
TCTACCAGGCGAGGTGCCTGAAACTCAGTCGCAATCCATGTCTCTAGCAG
GCCGCTTTCCACAGCTTGGGTCTGCTGCTTCCACACCATTTGGTGCTCCT
GGAATGATGGCAAATCAAGGAGTGATGTCGCAAATGGGGATGGGTGCTCC
AGGAATGCAAGGAATAAACCCAATGAACGGGTCCATGGGAATGGGCATGG
GCATGCAAGCGCCAATGGGGATGTCGCACACGGCAGGTCCTGGCGTCATG
GGTGGTAGTGCTCAAATGATGGGGGGTATTGGAGCTATGGGGAGTATGCA
GCCTAGCATGGCAATGGGTGGTGGTATGGGAGTACCAGGTGCCATGGGAA
TGCCAGGCGCTATGGGAATGCCAGGCGCTATGGGAATGCCAGGCGCCATG
GGAATGCAGGGCGGTATGGGCTCTCAAATGCCCATGAATGGCGGAACTGC
ACAACCTGATTTAATGACTCCTTTCGCTGGGATGAACCTTGGGGGAAATC
AGAAAACGTTTTAG

protein sequence of Gchil1688.t1

>Gchil1688.t1 ID=Gchil1688.t1|Name=Gchil1688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=688bp
MTLSADVTNANSYAACTALPSYLISGCCSAQHPSLLASLRPYSRPQRFSA
LEKSHSLAASASHATFSGVSGRTRSTLSCGNASTFVMSRYNDYDPRAPRR
SGGYGAAFDADQSRDRERSRDRSRDRGRRDRSRERDRGPRDEYSSSRAPI
PTIPASAAYDTYRPPSLPGKSSRSAYDTYRPGASSGSAYDTYRPPAASAS
ASAYDSYRPTRPPQRSASSAYDTYRPGARSNPPSSAYDTYRPPPRASAGS
AYNTYKPSDRAPPGSAYDTYRPGGGRDAPIAKENDYSAYETYRPPANPSK
EYIRKLEKYAGVSSAPAKERERSRDNRRSYDNESEESSDEEDEERSKSKR
KKASKKKKSRKSKNRKARSSDESEEEDDSDSESEVEDSVEDSSDTTSESD
DDSEEEDRRRKKSSKKKSKSKKSSGKKKKASKKNTKKTKKKKKKSDDSED
SSSSESEDESADETADISKAIVPINPGALGATAFGTDPNTFPDLMGGADF
GNTQEFAKEPTAADFANLPGEVPETQSQSMSLAGRFPQLGSAASTPFGAP
GMMANQGVMSQMGMGAPGMQGINPMNGSMGMGMGMQAPMGMSHTAGPGVM
GGSAQMMGGIGAMGSMQPSMAMGGGMGVPGAMGMPGAMGMPGAMGMPGAM
GMQGGMGSQMPMNGGTAQPDLMTPFAGMNLGGNQKTF*

mRNA from alignment at tig00004403_pilon:1725119..1727182+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1688.t1 ID=Gchil1688.t1|Name=Gchil1688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00004403_pilon:1725119..1727182+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATTGAGCGCCGACGTCACCAACGCAAATTCCTATGCCGCATGCAC
TGCATTGCCTTCGTACCTAATCAGCGGCTGCTGCTCCGCACAGCACCCCT
CCCTCCTGGCCTCCCTGCGCCCTTACTCCAGACCCCAACGTTTCTCCGCT
CTTGAGAAATCTCATTCTCTGGCTGCAAGCGCCTCTCACGCCACCTTCTC
CGGCGTTTCAGGCCGTACGCGGTCCACTCTCAGTTGCGGAAACGCTTCGA
CCTTCGTCATGTCGCGTTACAACGATTACGACCCGCGCGCGCCGCGCCGT
TCTGGAGGTTATGGTGCTGCATTTGACGCCGACCAAAGTCGCGACCGTGA
GCGCAGTCGAGACCGCAGTCGAGATCGCGGCCGTCGAGACCGCAGTCGTG
AGCGCGACCGAGGCCCGCGTGATGAGTATTCATCATCCCGTGCTCCAATC
CCGACCATTCCGGCCTCCGCTGCCTATGACACCTATCGTCCGCCGAGTCT
ACCAGGCAAGTCCTCGCGTTCTGCATACGACACCTATCGTCCAGGAGCTT
CATCGGGCTCTGCGTATGATACCTATCGCCCGCCGGCCGCCTCTGCCTCC
GCTTCGGCCTACGACTCTTACCGACCGACTAGGCCTCCGCAGCGTTCTGC
ATCAAGCGCGTATGACACATATCGACCGGGTGCTCGTTCCAATCCCCCCT
CTTCTGCGTACGATACCTATAGGCCTCCACCAAGGGCATCGGCCGGCAGT
GCTTACAACACCTACAAGCCCTCTGACAGAGCTCCTCCAGGAAGTGCATA
CGATACTTATAGACCTGGGGGCGGGCGTGATGCGCCGATAGCGAAGGAAA
ACGACTATAGCGCATACGAAACATATCGTCCACCAGCTAATCCATCGAAA
GAATATATAAGGAAACTTGAGAAGTACGCCGGCGTCTCATCAGCCCCTGC
AAAGGAGAGAGAACGAAGCCGTGACAATAGGCGAAGCTACGACAACGAGA
GCGAAGAAAGCTCGGATGAAGAAGATGAAGAAAGGTCCAAGTCCAAGAGA
AAGAAGGCCTCGAAGAAAAAGAAATCTCGTAAGAGCAAGAATAGGAAGGC
GCGGTCGAGTGACGAATCCGAAGAAGAGGATGATTCTGACTCTGAATCAG
AAGTTGAAGATTCTGTCGAGGATTCATCAGATACAACATCCGAATCAGAC
GACGACAGTGAGGAGGAAGACAGGAGAAGGAAGAAATCGTCCAAGAAAAA
GTCAAAGTCTAAGAAGTCTTCAGGgaagaagaagaaagcctccaaaaaaa
acactaagaaaacgaagaagaagaagaagaagaGCGATGATTCAGAAGAC
TCCAGTTCATCTGAAAGCGAAGATGAAAGCGCCGATGAAACAGCAGATAT
ATCTAAAGCAATAGTTCCAATTAACCCAGGCGCCTTGGGTGCAACTGCTT
TTGGCACAGACCCAAACACGTTTCCTGACTTAATGGGTGGAGCAGACTTT
GGCAATACACAAGAATTCGCGAAGGAACCAACTGCAGCAGATTTCGCAAA
TCTACCAGGCGAGGTGCCTGAAACTCAGTCGCAATCCATGTCTCTAGCAG
GCCGCTTTCCACAGCTTGGGTCTGCTGCTTCCACACCATTTGGTGCTCCT
GGAATGATGGCAAATCAAGGAGTGATGTCGCAAATGGGGATGGGTGCTCC
AGGAATGCAAGGAATAAACCCAATGAACGGGTCCATGGGAATGGGCATGG
GCATGCAAGCGCCAATGGGGATGTCGCACACGGCAGGTCCTGGCGTCATG
GGTGGTAGTGCTCAAATGATGGGGGGTATTGGAGCTATGGGGAGTATGCA
GCCTAGCATGGCAATGGGTGGTGGTATGGGAGTACCAGGTGCCATGGGAA
TGCCAGGCGCTATGGGAATGCCAGGCGCTATGGGAATGCCAGGCGCCATG
GGAATGCAGGGCGGTATGGGCTCTCAAATGCCCATGAATGGCGGAACTGC
ACAACCTGATTTAATGACTCCTTTCGCTGGGATGAACCTTGGGGGAAATC
AGAAAACGTTTTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:1725119..1727182+

>Gchil1688.t1 ID=Gchil1688.t1|Name=Gchil1688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2064bp|location=Sequence derived from alignment at tig00004403_pilon:1725119..1727182+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATTGAGCGCCGACGTCACCAACGCAAATTCCTATGCCGCATGCAC
TGCATTGCCTTCGTACCTAATCAGCGGCTGCTGCTCCGCACAGCACCCCT
CCCTCCTGGCCTCCCTGCGCCCTTACTCCAGACCCCAACGTTTCTCCGCT
CTTGAGAAATCTCATTCTCTGGCTGCAAGCGCCTCTCACGCCACCTTCTC
CGGCGTTTCAGGCCGTACGCGGTCCACTCTCAGTTGCGGAAACGCTTCGA
CCTTCGTCATGTCGCGTTACAACGATTACGACCCGCGCGCGCCGCGCCGT
TCTGGAGGTTATGGTGCTGCATTTGACGCCGACCAAAGTCGCGACCGTGA
GCGCAGTCGAGACCGCAGTCGAGATCGCGGCCGTCGAGACCGCAGTCGTG
AGCGCGACCGAGGCCCGCGTGATGAGTATTCATCATCCCGTGCTCCAATC
CCGACCATTCCGGCCTCCGCTGCCTATGACACCTATCGTCCGCCGAGTCT
ACCAGGCAAGTCCTCGCGTTCTGCATACGACACCTATCGTCCAGGAGCTT
CATCGGGCTCTGCGTATGATACCTATCGCCCGCCGGCCGCCTCTGCCTCC
GCTTCGGCCTACGACTCTTACCGACCGACTAGGCCTCCGCAGCGTTCTGC
ATCAAGCGCGTATGACACATATCGACCGGGTGCTCGTTCCAATCCCCCCT
CTTCTGCGTACGATACCTATAGGCCTCCACCAAGGGCATCGGCCGGCAGT
GCTTACAACACCTACAAGCCCTCTGACAGAGCTCCTCCAGGAAGTGCATA
CGATACTTATAGACCTGGGGGCGGGCGTGATGCGCCGATAGCGAAGGAAA
ACGACTATAGCGCATACGAAACATATCGTCCACCAGCTAATCCATCGAAA
GAATATATAAGGAAACTTGAGAAGTACGCCGGCGTCTCATCAGCCCCTGC
AAAGGAGAGAGAACGAAGCCGTGACAATAGGCGAAGCTACGACAACGAGA
GCGAAGAAAGCTCGGATGAAGAAGATGAAGAAAGGTCCAAGTCCAAGAGA
AAGAAGGCCTCGAAGAAAAAGAAATCTCGTAAGAGCAAGAATAGGAAGGC
GCGGTCGAGTGACGAATCCGAAGAAGAGGATGATTCTGACTCTGAATCAG
AAGTTGAAGATTCTGTCGAGGATTCATCAGATACAACATCCGAATCAGAC
GACGACAGTGAGGAGGAAGACAGGAGAAGGAAGAAATCGTCCAAGAAAAA
GTCAAAGTCTAAGAAGTCTTCAGGgaagaagaagaaagcctccaaaaaaa
acactaagaaaacgaagaagaagaagaagaagaGCGATGATTCAGAAGAC
TCCAGTTCATCTGAAAGCGAAGATGAAAGCGCCGATGAAACAGCAGATAT
ATCTAAAGCAATAGTTCCAATTAACCCAGGCGCCTTGGGTGCAACTGCTT
TTGGCACAGACCCAAACACGTTTCCTGACTTAATGGGTGGAGCAGACTTT
GGCAATACACAAGAATTCGCGAAGGAACCAACTGCAGCAGATTTCGCAAA
TCTACCAGGCGAGGTGCCTGAAACTCAGTCGCAATCCATGTCTCTAGCAG
GCCGCTTTCCACAGCTTGGGTCTGCTGCTTCCACACCATTTGGTGCTCCT
GGAATGATGGCAAATCAAGGAGTGATGTCGCAAATGGGGATGGGTGCTCC
AGGAATGCAAGGAATAAACCCAATGAACGGGTCCATGGGAATGGGCATGG
GCATGCAAGCGCCAATGGGGATGTCGCACACGGCAGGTCCTGGCGTCATG
GGTGGTAGTGCTCAAATGATGGGGGGTATTGGAGCTATGGGGAGTATGCA
GCCTAGCATGGCAATGGGTGGTGGTATGGGAGTACCAGGTGCCATGGGAA
TGCCAGGCGCTATGGGAATGCCAGGCGCTATGGGAATGCCAGGCGCCATG
GGAATGCAGGGCGGTATGGGCTCTCAAATGCCCATGAATGGCGGAACTGC
ACAACCTGATTTAATGACTCCTTTCGCTGGGATGAACCTTGGGGGAAATC
AGAAAACGTTTTAG