Gchil1685.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1685.t1
Unique NameGchil1685.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length551
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1589693..1591345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME037CT
PFAMsDALR_2,tRNA-synt_1e
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue2.18e-152
EggNOG OGsCOG0215@1|root,KOG2007@2759|Eukaryota
EC6.1.1.16
Descriptioncysteinyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1685Gchil1685Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1589693..1591345 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1685.t1.stop1Gchil1685.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1589693..1589695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1685.t1.CDS1Gchil1685.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1589693..1591345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1685.t1.exon1Gchil1685.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1589693..1591345 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1685.t1.start1Gchil1685.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1591343..1591345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1685.t1Gchil1685.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1589693..1591345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1685.t1 ID=Gchil1685.t1|Name=Gchil1685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MDAAFASPPPPPPPLQRATSLLPAAAFGARCSPTKQCIRRRPTGRAHLPA
SPSTANSAQATSAQSVPPDHLLKLFNSLTKQKETFHTIEPAVVRFYSCGP
TVYDFAHIGNFRAFLTYDVIKRWLLCKRYTVRHVMNLTDVDDKIIARMQR
DKCSAAQLTTRYAQAFFDDLKLLNVIPADHYPRATQHIQRMEHFINGLKR
RGHAYEKQGSTYFRVSSFERYGRLAQLDKRQTAASAAAVDGDEYHKEDAR
DFALWKSHKEQDGDVFWHSSLGKGRPGWHVECSCMAMHYLGAQLDIHAGG
IDLVFPHHDNEIAQSEALTGKPFASFWLHNGFVNIDDEKMSKSLGNFRTL
RDIVHKPDDARAFRYLVASSHYRSALAFTDKCLESSRNTIKRLDALRARL
QEDQVVGGGGEQEIRGIIDDARQKFTTAMDDDLNTPRAAAAMFSVVSAAE
KMIKAGRLGEEASAQVTDCLADMDRVFGIFYTPLVSAEQQDGAGEKDDAA
PQELVALLERRAEARKARDFERADEIRDTITAAGFCIKDTVHGATLQRME
*
back to top

spliced messenger RNA

>Gchil1685.t1 ID=Gchil1685.t1|Name=Gchil1685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004403_pilon:1589693..1591345- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCGCCTTCGCATCGCCGCCGCCGCCGCCTCCGCCGCTCCAGCG
CGCCACTTCGCTCCTTCCGGCCGCAGCCTTCGGCGCGCGCTGCTCACCCA
CCAAACAATGCATCCGCCGCCGCCCAACAGGTCGCGCCCATCTCCCCGCC
TCTCCGTCCACAGCAAACAGCGCGCAAGCCACCAGCGCACAGTCGGTTCC
CCCAGACCATCTGCTCAAGCTATTCAACTCGCTCACCAAACAAAAGGAAA
CCTTCCACACCATCGAGCCCGCAGTAGTGCGTTTCTACTCCTGCGGCCCC
ACCGTGTACGACTTTGCGCACATCGGAAATTTCAGGGCCTTTCTCACGTA
CGACGTCATCAAGCGCTGGCTGCTGTGCAAGCGCTACACCGTGCGACATG
TCATGAACCTCACGGATGTGGATGACAAGATCATTGCGCGCATGCAGCGT
GACAAGTGCTCCGCCGCCCAGCTCACTACGCGCTACGCACAAGCGTTTTT
TGACGATCTCAAGCTTCTCAACGTCATTCCAGCCGACCACTACCCCCGCG
CCACCCAGCACATTCAGCGCATGGAACACTTTATCAACGGCTTGAAGCGT
CGCGGGCACGCGTACGAAAAACAGGGCTCAACATACTTTCGTGTGTCCAG
CTTTGAGCGCTACGGCCGTCTCGCGCAGCTCGACAAGAGGCAGACGGCCG
CAAGCGCCGCCGCCGTCGATGGCGACGAATACCACAAAGAGGACGCGCGT
GATTTTGCCTTGTGGAAATCACACAAGGAGCAAGACGGCGACGTGTTCTG
GCACTCCTCGCTTGGAAAGGGGCGGCCCGGATGGCACGTGGAATGCTCGT
GCATGGCCATGCACTACCTCGGAGCTCAGTTGGACATTCACGCCGGCGGC
ATCGACCTTGTATTCCCGCACCACGACAACGAAATCGCGCAATCCGAGGC
ACTCACCGGGAAACCATTTGCTTCGTTCTGGCTGCACAACGGGTTTGTGA
ACATTGACGACGAAAAAATGTCAAAGAGTCTGGGAAACTTTCGCACGCTG
CGCGACATTGTGCACAAGCCCGACGATGCACGCGCGTTTCGGTATTTGGT
GGCGTCGTCACACTACCGTTCGGCATTGGCATTTACGGACAAGTGTCTTG
AGTCATCGCGCAACACAATCAAGCGACTGGACGCGCTGCGCGCGCGGCTG
CAGGAGGATCAAGTAGTCGGTGGGGGTGGCGAGCAAGAGATACGGGGTAT
CATAGATGATGCACGGCAAAAGTTCACCACTGCAATGGATGATGATCTCA
ACACCCCTCGAGCAGCTGCTGCAATGTTCTCCGTGGTGAGCGCGGCCGAG
AAAATGATCAAGGCGGGGCGGCTTGGAGAGGAAGCTTCGGCCCAAGTTAC
GGATTGCCTCGCGGACATGGACAGAGTATTTGGCATATTTTACACGCCAC
TCGTGAGCGCAGAGCAACAAGACGGTGCGGGCGAGAAGGACGACGCTGCA
CCACAGGAGCTAGTTGCTCTGTTGGAGCGCAGAGCAGAAGCAAGAAAGGC
AAGAGACTTTGAGCGCGCCGATGAAATACGCGACACTATCACGGCGGCCG
GGTTTTGCATCAAGGACACCGTGCATGGTGCCACGCTGCAACGCATGGAG
TAG
back to top

protein sequence of Gchil1685.t1

>Gchil1685.t1 ID=Gchil1685.t1|Name=Gchil1685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MDAAFASPPPPPPPLQRATSLLPAAAFGARCSPTKQCIRRRPTGRAHLPA
SPSTANSAQATSAQSVPPDHLLKLFNSLTKQKETFHTIEPAVVRFYSCGP
TVYDFAHIGNFRAFLTYDVIKRWLLCKRYTVRHVMNLTDVDDKIIARMQR
DKCSAAQLTTRYAQAFFDDLKLLNVIPADHYPRATQHIQRMEHFINGLKR
RGHAYEKQGSTYFRVSSFERYGRLAQLDKRQTAASAAAVDGDEYHKEDAR
DFALWKSHKEQDGDVFWHSSLGKGRPGWHVECSCMAMHYLGAQLDIHAGG
IDLVFPHHDNEIAQSEALTGKPFASFWLHNGFVNIDDEKMSKSLGNFRTL
RDIVHKPDDARAFRYLVASSHYRSALAFTDKCLESSRNTIKRLDALRARL
QEDQVVGGGGEQEIRGIIDDARQKFTTAMDDDLNTPRAAAAMFSVVSAAE
KMIKAGRLGEEASAQVTDCLADMDRVFGIFYTPLVSAEQQDGAGEKDDAA
PQELVALLERRAEARKARDFERADEIRDTITAAGFCIKDTVHGATLQRME
*
back to top

mRNA from alignment at tig00004403_pilon:1589693..1591345-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1685.t1 ID=Gchil1685.t1|Name=Gchil1685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004403_pilon:1589693..1591345- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCGCCTTCGCATCGCCGCCGCCGCCGCCTCCGCCGCTCCAGCG
CGCCACTTCGCTCCTTCCGGCCGCAGCCTTCGGCGCGCGCTGCTCACCCA
CCAAACAATGCATCCGCCGCCGCCCAACAGGTCGCGCCCATCTCCCCGCC
TCTCCGTCCACAGCAAACAGCGCGCAAGCCACCAGCGCACAGTCGGTTCC
CCCAGACCATCTGCTCAAGCTATTCAACTCGCTCACCAAACAAAAGGAAA
CCTTCCACACCATCGAGCCCGCAGTAGTGCGTTTCTACTCCTGCGGCCCC
ACCGTGTACGACTTTGCGCACATCGGAAATTTCAGGGCCTTTCTCACGTA
CGACGTCATCAAGCGCTGGCTGCTGTGCAAGCGCTACACCGTGCGACATG
TCATGAACCTCACGGATGTGGATGACAAGATCATTGCGCGCATGCAGCGT
GACAAGTGCTCCGCCGCCCAGCTCACTACGCGCTACGCACAAGCGTTTTT
TGACGATCTCAAGCTTCTCAACGTCATTCCAGCCGACCACTACCCCCGCG
CCACCCAGCACATTCAGCGCATGGAACACTTTATCAACGGCTTGAAGCGT
CGCGGGCACGCGTACGAAAAACAGGGCTCAACATACTTTCGTGTGTCCAG
CTTTGAGCGCTACGGCCGTCTCGCGCAGCTCGACAAGAGGCAGACGGCCG
CAAGCGCCGCCGCCGTCGATGGCGACGAATACCACAAAGAGGACGCGCGT
GATTTTGCCTTGTGGAAATCACACAAGGAGCAAGACGGCGACGTGTTCTG
GCACTCCTCGCTTGGAAAGGGGCGGCCCGGATGGCACGTGGAATGCTCGT
GCATGGCCATGCACTACCTCGGAGCTCAGTTGGACATTCACGCCGGCGGC
ATCGACCTTGTATTCCCGCACCACGACAACGAAATCGCGCAATCCGAGGC
ACTCACCGGGAAACCATTTGCTTCGTTCTGGCTGCACAACGGGTTTGTGA
ACATTGACGACGAAAAAATGTCAAAGAGTCTGGGAAACTTTCGCACGCTG
CGCGACATTGTGCACAAGCCCGACGATGCACGCGCGTTTCGGTATTTGGT
GGCGTCGTCACACTACCGTTCGGCATTGGCATTTACGGACAAGTGTCTTG
AGTCATCGCGCAACACAATCAAGCGACTGGACGCGCTGCGCGCGCGGCTG
CAGGAGGATCAAGTAGTCGGTGGGGGTGGCGAGCAAGAGATACGGGGTAT
CATAGATGATGCACGGCAAAAGTTCACCACTGCAATGGATGATGATCTCA
ACACCCCTCGAGCAGCTGCTGCAATGTTCTCCGTGGTGAGCGCGGCCGAG
AAAATGATCAAGGCGGGGCGGCTTGGAGAGGAAGCTTCGGCCCAAGTTAC
GGATTGCCTCGCGGACATGGACAGAGTATTTGGCATATTTTACACGCCAC
TCGTGAGCGCAGAGCAACAAGACGGTGCGGGCGAGAAGGACGACGCTGCA
CCACAGGAGCTAGTTGCTCTGTTGGAGCGCAGAGCAGAAGCAAGAAAGGC
AAGAGACTTTGAGCGCGCCGATGAAATACGCGACACTATCACGGCGGCCG
GGTTTTGCATCAAGGACACCGTGCATGGTGCCACGCTGCAACGCATGGAG
TAG
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1589693..1591345-

>Gchil1685.t1 ID=Gchil1685.t1|Name=Gchil1685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004403_pilon:1589693..1591345- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCGCCTTCGCATCGCCGCCGCCGCCGCCTCCGCCGCTCCAGCG
CGCCACTTCGCTCCTTCCGGCCGCAGCCTTCGGCGCGCGCTGCTCACCCA
CCAAACAATGCATCCGCCGCCGCCCAACAGGTCGCGCCCATCTCCCCGCC
TCTCCGTCCACAGCAAACAGCGCGCAAGCCACCAGCGCACAGTCGGTTCC
CCCAGACCATCTGCTCAAGCTATTCAACTCGCTCACCAAACAAAAGGAAA
CCTTCCACACCATCGAGCCCGCAGTAGTGCGTTTCTACTCCTGCGGCCCC
ACCGTGTACGACTTTGCGCACATCGGAAATTTCAGGGCCTTTCTCACGTA
CGACGTCATCAAGCGCTGGCTGCTGTGCAAGCGCTACACCGTGCGACATG
TCATGAACCTCACGGATGTGGATGACAAGATCATTGCGCGCATGCAGCGT
GACAAGTGCTCCGCCGCCCAGCTCACTACGCGCTACGCACAAGCGTTTTT
TGACGATCTCAAGCTTCTCAACGTCATTCCAGCCGACCACTACCCCCGCG
CCACCCAGCACATTCAGCGCATGGAACACTTTATCAACGGCTTGAAGCGT
CGCGGGCACGCGTACGAAAAACAGGGCTCAACATACTTTCGTGTGTCCAG
CTTTGAGCGCTACGGCCGTCTCGCGCAGCTCGACAAGAGGCAGACGGCCG
CAAGCGCCGCCGCCGTCGATGGCGACGAATACCACAAAGAGGACGCGCGT
GATTTTGCCTTGTGGAAATCACACAAGGAGCAAGACGGCGACGTGTTCTG
GCACTCCTCGCTTGGAAAGGGGCGGCCCGGATGGCACGTGGAATGCTCGT
GCATGGCCATGCACTACCTCGGAGCTCAGTTGGACATTCACGCCGGCGGC
ATCGACCTTGTATTCCCGCACCACGACAACGAAATCGCGCAATCCGAGGC
ACTCACCGGGAAACCATTTGCTTCGTTCTGGCTGCACAACGGGTTTGTGA
ACATTGACGACGAAAAAATGTCAAAGAGTCTGGGAAACTTTCGCACGCTG
CGCGACATTGTGCACAAGCCCGACGATGCACGCGCGTTTCGGTATTTGGT
GGCGTCGTCACACTACCGTTCGGCATTGGCATTTACGGACAAGTGTCTTG
AGTCATCGCGCAACACAATCAAGCGACTGGACGCGCTGCGCGCGCGGCTG
CAGGAGGATCAAGTAGTCGGTGGGGGTGGCGAGCAAGAGATACGGGGTAT
CATAGATGATGCACGGCAAAAGTTCACCACTGCAATGGATGATGATCTCA
ACACCCCTCGAGCAGCTGCTGCAATGTTCTCCGTGGTGAGCGCGGCCGAG
AAAATGATCAAGGCGGGGCGGCTTGGAGAGGAAGCTTCGGCCCAAGTTAC
GGATTGCCTCGCGGACATGGACAGAGTATTTGGCATATTTTACACGCCAC
TCGTGAGCGCAGAGCAACAAGACGGTGCGGGCGAGAAGGACGACGCTGCA
CCACAGGAGCTAGTTGCTCTGTTGGAGCGCAGAGCAGAAGCAAGAAAGGC
AAGAGACTTTGAGCGCGCCGATGAAATACGCGACACTATCACGGCGGCCG
GGTTTTGCATCAAGGACACCGTGCATGGTGCCACGCTGCAACGCATGGAG
TAG
back to top