Gchil1684.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1684.t1
Unique Name	Gchil1684.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	456

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1588215..1589582 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709110.1
Preferred name	DCAF13
PFAMs	Sof1,WD40
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11806
GOs	GO:0000151,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030054,GO:0030331,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031461,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035257,GO:0035258,GO:0036211,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051427,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1990234,GO:1990904
Evalue	1.12e-82
EggNOG OGs	KOG0268@1\|root,KOG0268@2759\|Eukaryota
Description	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG category	S
BRITE	ko00000,ko03009,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1684	Gchil1684	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1588215..1589582 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1684.t1.start1	Gchil1684.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1588215..1588217 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1684.t1.CDS1	Gchil1684.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1588215..1589582 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1684.t1.exon1	Gchil1684.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1588215..1589582 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1684.t1.stop1	Gchil1684.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1589580..1589582 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1684.t1	Gchil1684.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1588215..1589582 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1588215..1589582+
coding sequence from alignment at tig00004403_pilon:1588215..1589582+

mRNA sequence

>Gchil1684.t1 ID=Gchil1684.t1|Name=Gchil1684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=456bp
MRLRVLSRSDAEWSGRNDGTINRARHSTNVASQLHAPQHALDVQRSITAA
KLSRILARPFLFCCAPSHVDGVYCMARSRADVALLASASADGELRLWHLP
SHKPRLVFAPLPRAFVRGVSFSFDSQHVFMCTDAKLVYCVDVRASYHHTP
SLTDGVQQYRSNAGPLAAIDANYKQPLFATAASVVQIWDQTRSNPIHSLS
ASPDSLHCVRWNPVETSILASAASDRSITLYDVRVKSPIRRLVLKTRTNQ
ISWNPIEPMNFVTANDDHNCYSYDMRKLSARGALTVHTDHTAAVMSVDFS
PTGQQFVSGSYDKTVRIFPYTTGKSREVYHTKRMQRVFAVSFSLDGAYVI
SGSDDADVRVWKSDRSRPLKPLFAAERDKLNAAEKLIHRYQAIPQVRRIA
KKRHLPAHVRSMQLTKAIMKKSAQRKENNVRRNTKPQNRPNKVQQRKKNI
VRELE*

spliced messenger RNA

>Gchil1684.t1 ID=Gchil1684.t1|Name=Gchil1684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004403_pilon:1588215..1589582+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTGCGCGTGCTGTCGCGCTCCGACGCAGAGTGGTCGGGGCGCAA
CGACGGCACCATCAACCGCGCGCGGCACTCCACCAACGTCGCGTCTCAAC
TACACGCCCCGCAACACGCGCTAGACGTACAACGCTCCATCACAGCCGCA
AAACTTTCGCGCATCCTGGCACGTCCGTTTCTCTTCTGTTGCGCCCCCTC
GCACGTCGACGGCGTATACTGCATGGCACGCTCCCGCGCCGACGTCGCTC
TTCTCGCCTCCGCTTCGGCCGACGGCGAGCTTCGTCTGTGGCATTTGCCC
TCGCACAAGCCGCGTTTAGTGTTTGCGCCGCTGCCTCGCGCCTTTGTGCG
TGGCGTTTCGTTTTCATTTGATTCGCAACATGTGTTCATGTGCACTGATG
CAAAGCTTGTTTACTGTGTTGACGTGCGTGCGTCATACCATCATACCCCG
TCTTTGACCGATGGTGTACAACAGTATCGCTCCAACGCGGGGCCGCTGGC
TGCTATAGACGCAAACTACAAGCAACCTTTGTTTGCGACCGCTGCCTCAG
TCGTTCAGATCTGGGATCAAACGCGCTCCAATCCCATCCACTCGCTCTCC
GCCTCTCCGGACTCGTTGCACTGCGTGCGATGGAACCCGGTGGAGACGTC
CATTCTGGCATCTGCCGCATCGGATCGCTCCATCACTCTGTACGACGTGC
GCGTCAAGTCGCCCATTCGCCGTCTTGTCTTGAAAACACGCACCAACCAA
ATCTCGTGGAACCCCATCGAACCGATGAATTTTGTCACCGCAAACGACGA
CCACAACTGCTACTCGTACGACATGAGAAAACTCTCCGCAAGAGGTGCCC
TTACCGTCCACACCGACCACACCGCCGCCGTCATGTCCGTCGACTTCAGC
CCCACAGGCCAGCAATTCGTCTCCGGAAGCTACGACAAAACCGTCCGAAT
CTTCCCGTACACCACCGGCAAAAGTCGTGAGGTCTACCACACCAAGCGCA
TGCAACGCGTCTTTGCCGTCTCCTTCTCGCTGGACGGTGCCTATGTCATA
TCTGGCAGCGACGATGCCGATGTTCGCGTGTGGAAAAGTGACAGAAGTCG
CCCGCTCAAGCCTCTTTTTGCCGCGGAGCGCGACAAGCTCAATGCCGCCG
AAAAGTTGATCCACAGGTACCAGGCTATACCGCAGGTGCGCCGCATTGCC
AAGAAGCGCCACCTTCCGGCCCATGTGCGCTCCATGCAGCTCACCAAGGC
AATCATGAAGAAGAGTGCCCAGCGCAAGGAGAACAACGTGCGAAGAAACA
CCAAGCCGCAAAACCGACCCAACAAGGTGCAACAGCGCAAGAAAAACATT
GTGCGCGAGTTGGAATAG

protein sequence of Gchil1684.t1

>Gchil1684.t1 ID=Gchil1684.t1|Name=Gchil1684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=456bp
MRLRVLSRSDAEWSGRNDGTINRARHSTNVASQLHAPQHALDVQRSITAA
KLSRILARPFLFCCAPSHVDGVYCMARSRADVALLASASADGELRLWHLP
SHKPRLVFAPLPRAFVRGVSFSFDSQHVFMCTDAKLVYCVDVRASYHHTP
SLTDGVQQYRSNAGPLAAIDANYKQPLFATAASVVQIWDQTRSNPIHSLS
ASPDSLHCVRWNPVETSILASAASDRSITLYDVRVKSPIRRLVLKTRTNQ
ISWNPIEPMNFVTANDDHNCYSYDMRKLSARGALTVHTDHTAAVMSVDFS
PTGQQFVSGSYDKTVRIFPYTTGKSREVYHTKRMQRVFAVSFSLDGAYVI
SGSDDADVRVWKSDRSRPLKPLFAAERDKLNAAEKLIHRYQAIPQVRRIA
KKRHLPAHVRSMQLTKAIMKKSAQRKENNVRRNTKPQNRPNKVQQRKKNI
VRELE*

mRNA from alignment at tig00004403_pilon:1588215..1589582+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1684.t1 ID=Gchil1684.t1|Name=Gchil1684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at tig00004403_pilon:1588215..1589582+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGCTGCGCGTGCTGTCGCGCTCCGACGCAGAGTGGTCGGGGCGCAA
CGACGGCACCATCAACCGCGCGCGGCACTCCACCAACGTCGCGTCTCAAC
TACACGCCCCGCAACACGCGCTAGACGTACAACGCTCCATCACAGCCGCA
AAACTTTCGCGCATCCTGGCACGTCCGTTTCTCTTCTGTTGCGCCCCCTC
GCACGTCGACGGCGTATACTGCATGGCACGCTCCCGCGCCGACGTCGCTC
TTCTCGCCTCCGCTTCGGCCGACGGCGAGCTTCGTCTGTGGCATTTGCCC
TCGCACAAGCCGCGTTTAGTGTTTGCGCCGCTGCCTCGCGCCTTTGTGCG
TGGCGTTTCGTTTTCATTTGATTCGCAACATGTGTTCATGTGCACTGATG
CAAAGCTTGTTTACTGTGTTGACGTGCGTGCGTCATACCATCATACCCCG
TCTTTGACCGATGGTGTACAACAGTATCGCTCCAACGCGGGGCCGCTGGC
TGCTATAGACGCAAACTACAAGCAACCTTTGTTTGCGACCGCTGCCTCAG
TCGTTCAGATCTGGGATCAAACGCGCTCCAATCCCATCCACTCGCTCTCC
GCCTCTCCGGACTCGTTGCACTGCGTGCGATGGAACCCGGTGGAGACGTC
CATTCTGGCATCTGCCGCATCGGATCGCTCCATCACTCTGTACGACGTGC
GCGTCAAGTCGCCCATTCGCCGTCTTGTCTTGAAAACACGCACCAACCAA
ATCTCGTGGAACCCCATCGAACCGATGAATTTTGTCACCGCAAACGACGA
CCACAACTGCTACTCGTACGACATGAGAAAACTCTCCGCAAGAGGTGCCC
TTACCGTCCACACCGACCACACCGCCGCCGTCATGTCCGTCGACTTCAGC
CCCACAGGCCAGCAATTCGTCTCCGGAAGCTACGACAAAACCGTCCGAAT
CTTCCCGTACACCACCGGCAAAAGTCGTGAGGTCTACCACACCAAGCGCA
TGCAACGCGTCTTTGCCGTCTCCTTCTCGCTGGACGGTGCCTATGTCATA
TCTGGCAGCGACGATGCCGATGTTCGCGTGTGGAAAAGTGACAGAAGTCG
CCCGCTCAAGCCTCTTTTTGCCGCGGAGCGCGACAAGCTCAATGCCGCCG
AAAAGTTGATCCACAGGTACCAGGCTATACCGCAGGTGCGCCGCATTGCC
AAGAAGCGCCACCTTCCGGCCCATGTGCGCTCCATGCAGCTCACCAAGGC
AATCATGAAGAAGAGTGCCCAGCGCAAGGAGAACAACGTGCGAAGAAACA
CCAAGCCGCAAAACCGACCCAACAAGGTGCAACAGCGCAAGAAAAACATT
GTGCGCGAGTTGGAATAG

Coding sequence (CDS) from alignment at tig00004403_pilon:1588215..1589582+

>Gchil1684.t1 ID=Gchil1684.t1|Name=Gchil1684.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1368bp|location=Sequence derived from alignment at tig00004403_pilon:1588215..1589582+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGCTGCGCGTGCTGTCGCGCTCCGACGCAGAGTGGTCGGGGCGCAA
CGACGGCACCATCAACCGCGCGCGGCACTCCACCAACGTCGCGTCTCAAC
TACACGCCCCGCAACACGCGCTAGACGTACAACGCTCCATCACAGCCGCA
AAACTTTCGCGCATCCTGGCACGTCCGTTTCTCTTCTGTTGCGCCCCCTC
GCACGTCGACGGCGTATACTGCATGGCACGCTCCCGCGCCGACGTCGCTC
TTCTCGCCTCCGCTTCGGCCGACGGCGAGCTTCGTCTGTGGCATTTGCCC
TCGCACAAGCCGCGTTTAGTGTTTGCGCCGCTGCCTCGCGCCTTTGTGCG
TGGCGTTTCGTTTTCATTTGATTCGCAACATGTGTTCATGTGCACTGATG
CAAAGCTTGTTTACTGTGTTGACGTGCGTGCGTCATACCATCATACCCCG
TCTTTGACCGATGGTGTACAACAGTATCGCTCCAACGCGGGGCCGCTGGC
TGCTATAGACGCAAACTACAAGCAACCTTTGTTTGCGACCGCTGCCTCAG
TCGTTCAGATCTGGGATCAAACGCGCTCCAATCCCATCCACTCGCTCTCC
GCCTCTCCGGACTCGTTGCACTGCGTGCGATGGAACCCGGTGGAGACGTC
CATTCTGGCATCTGCCGCATCGGATCGCTCCATCACTCTGTACGACGTGC
GCGTCAAGTCGCCCATTCGCCGTCTTGTCTTGAAAACACGCACCAACCAA
ATCTCGTGGAACCCCATCGAACCGATGAATTTTGTCACCGCAAACGACGA
CCACAACTGCTACTCGTACGACATGAGAAAACTCTCCGCAAGAGGTGCCC
TTACCGTCCACACCGACCACACCGCCGCCGTCATGTCCGTCGACTTCAGC
CCCACAGGCCAGCAATTCGTCTCCGGAAGCTACGACAAAACCGTCCGAAT
CTTCCCGTACACCACCGGCAAAAGTCGTGAGGTCTACCACACCAAGCGCA
TGCAACGCGTCTTTGCCGTCTCCTTCTCGCTGGACGGTGCCTATGTCATA
TCTGGCAGCGACGATGCCGATGTTCGCGTGTGGAAAAGTGACAGAAGTCG
CCCGCTCAAGCCTCTTTTTGCCGCGGAGCGCGACAAGCTCAATGCCGCCG
AAAAGTTGATCCACAGGTACCAGGCTATACCGCAGGTGCGCCGCATTGCC
AAGAAGCGCCACCTTCCGGCCCATGTGCGCTCCATGCAGCTCACCAAGGC
AATCATGAAGAAGAGTGCCCAGCGCAAGGAGAACAACGTGCGAAGAAACA
CCAAGCCGCAAAACCGACCCAACAAGGTGCAACAGCGCAAGAAAAACATT
GTGCGCGAGTTGGAATAG