Gchil1683.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1683.t1
Unique NameGchil1683.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1586821..1587513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo5g143560.1
PFAMsAgenet,DUF724
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046983
Evalue1.78e-05
EggNOG OGs28M7S@1|root,2QTQX@2759|Eukaryota,37JZD@33090|Viridiplantae,3GCP4@35493|Streptophyta,3HUFS@3699|Brassicales
Descriptionagenet domain-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1683Gchil1683Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1586821..1587513 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1683.t1.start1Gchil1683.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1586821..1586823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1683.t1.CDS1Gchil1683.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1586821..1587513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1683.t1.exon1Gchil1683.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1586821..1587513 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1683.t1.stop1Gchil1683.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1587511..1587513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1683.t1Gchil1683.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1586821..1587513 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1683.t1 ID=Gchil1683.t1|Name=Gchil1683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=231bp
MASDTPAVARIWYVVRYVHRVQRNGRALEEEVLAKRMRPQAPEVDGWRPD
IGDAIEVLRDGGWFIGVVQTLVIRKGYLVSFENGGVEWIRRHLLRPYHIW
RGGLNWVVKKKAPLMVVRKSVGLSVTHPVCGKRGHDGGAYEGRSEGGGGS
GSGSGSGSGSGSGGRKRAKRTAAEWIGDGSGPDGLPEGWRVGRTHDHHDA
LSTVYVAPDGQRLRSLKEAVRYVKLMRVLV*
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spliced messenger RNA

>Gchil1683.t1 ID=Gchil1683.t1|Name=Gchil1683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004403_pilon:1586821..1587513+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCGGACACGCCGGCCGTGGCGCGCATTTGGTACGTGGTGCGGTA
CGTGCATCGGGTACAGCGAAACGGAAGGGCGCTGGAGGAGGAGGTGTTGG
CAAAACGTATGCGACCGCAGGCACCTGAGGTGGACGGGTGGCGACCGGAC
ATTGGCGATGCCATCGAGGTGCTCCGTGACGGAGGGTGGTTTATCGGAGT
GGTACAAACGCTGGTGATTCGAAAGGGATACCTGGTGAGTTTTGAAAACG
GTGGCGTGGAATGGATTCGACGACATTTGCTGCGACCGTACCACATTTGG
CGCGGCGGGCTCAACTGGGTGGTGAAGAAGAAGGCGCCGCTCATGGTGGT
GCGCAAGAGCGTCGGGCTGAGCGTGACGCACCCTGTGTGCGGCAAGAGAG
GGCACGACGGTGGCGCGTACGAGGGGCGTAGCGAAGGCGGAGgcggcagc
ggcagcggcagcggcagcggcagcggcagcggcagcggcGGCAGGAAGAG
AGCAAAGAGAACGGCGGCGGAGTGGATTGGCGACGGCTCCGGGCCAGACG
GACTGCCCGAGGGCTGGCGCGTGGGCCGAACGCACGACCACCACGACGCA
CTCTCTACCGTGTACGTTGCGCCCGATGGACAGCGACTGAGATCGCTCAA
GGAAGCAGTGCGCTACGTCAAACTCATGCGCGTGCTCGTGTAA
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protein sequence of Gchil1683.t1

>Gchil1683.t1 ID=Gchil1683.t1|Name=Gchil1683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=231bp
MASDTPAVARIWYVVRYVHRVQRNGRALEEEVLAKRMRPQAPEVDGWRPD
IGDAIEVLRDGGWFIGVVQTLVIRKGYLVSFENGGVEWIRRHLLRPYHIW
RGGLNWVVKKKAPLMVVRKSVGLSVTHPVCGKRGHDGGAYEGRSEGGGGS
GSGSGSGSGSGSGGRKRAKRTAAEWIGDGSGPDGLPEGWRVGRTHDHHDA
LSTVYVAPDGQRLRSLKEAVRYVKLMRVLV*
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mRNA from alignment at tig00004403_pilon:1586821..1587513+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1683.t1 ID=Gchil1683.t1|Name=Gchil1683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004403_pilon:1586821..1587513+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCGGACACGCCGGCCGTGGCGCGCATTTGGTACGTGGTGCGGTA
CGTGCATCGGGTACAGCGAAACGGAAGGGCGCTGGAGGAGGAGGTGTTGG
CAAAACGTATGCGACCGCAGGCACCTGAGGTGGACGGGTGGCGACCGGAC
ATTGGCGATGCCATCGAGGTGCTCCGTGACGGAGGGTGGTTTATCGGAGT
GGTACAAACGCTGGTGATTCGAAAGGGATACCTGGTGAGTTTTGAAAACG
GTGGCGTGGAATGGATTCGACGACATTTGCTGCGACCGTACCACATTTGG
CGCGGCGGGCTCAACTGGGTGGTGAAGAAGAAGGCGCCGCTCATGGTGGT
GCGCAAGAGCGTCGGGCTGAGCGTGACGCACCCTGTGTGCGGCAAGAGAG
GGCACGACGGTGGCGCGTACGAGGGGCGTAGCGAAGGCGGAGgcggcagc
ggcagcggcagcggcagcggcagcggcagcggcagcggcGGCAGGAAGAG
AGCAAAGAGAACGGCGGCGGAGTGGATTGGCGACGGCTCCGGGCCAGACG
GACTGCCCGAGGGCTGGCGCGTGGGCCGAACGCACGACCACCACGACGCA
CTCTCTACCGTGTACGTTGCGCCCGATGGACAGCGACTGAGATCGCTCAA
GGAAGCAGTGCGCTACGTCAAACTCATGCGCGTGCTCGTGTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1586821..1587513+

>Gchil1683.t1 ID=Gchil1683.t1|Name=Gchil1683.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00004403_pilon:1586821..1587513+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATCGGACACGCCGGCCGTGGCGCGCATTTGGTACGTGGTGCGGTA
CGTGCATCGGGTACAGCGAAACGGAAGGGCGCTGGAGGAGGAGGTGTTGG
CAAAACGTATGCGACCGCAGGCACCTGAGGTGGACGGGTGGCGACCGGAC
ATTGGCGATGCCATCGAGGTGCTCCGTGACGGAGGGTGGTTTATCGGAGT
GGTACAAACGCTGGTGATTCGAAAGGGATACCTGGTGAGTTTTGAAAACG
GTGGCGTGGAATGGATTCGACGACATTTGCTGCGACCGTACCACATTTGG
CGCGGCGGGCTCAACTGGGTGGTGAAGAAGAAGGCGCCGCTCATGGTGGT
GCGCAAGAGCGTCGGGCTGAGCGTGACGCACCCTGTGTGCGGCAAGAGAG
GGCACGACGGTGGCGCGTACGAGGGGCGTAGCGAAGGCGGAGgcggcagc
ggcagcggcagcggcagcggcagcggcagcggcagcggcGGCAGGAAGAG
AGCAAAGAGAACGGCGGCGGAGTGGATTGGCGACGGCTCCGGGCCAGACG
GACTGCCCGAGGGCTGGCGCGTGGGCCGAACGCACGACCACCACGACGCA
CTCTCTACCGTGTACGTTGCGCCCGATGGACAGCGACTGAGATCGCTCAA
GGAAGCAGTGCGCTACGTCAAACTCATGCGCGTGCTCGTGTAA
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