Gchil1680.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1680.t1
Unique Name	Gchil1680.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	649

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1575876..1577822 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709043.1
Preferred name	NOL9
PFAMs	CLP1_P
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06947,ko:K14399
KEGG Pathway	ko03015,map03015
GOs	GO:0000166,GO:0000228,GO:0000394,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000775,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005724,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006325,GO:0006342,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006363,GO:0006364,GO:0006378,GO:0006379,GO:0006388,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016301,GO:0016310,GO:0016458,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0022613,GO:0030554,GO:0030702,GO:0030874,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031618,GO:0031933,GO:0031934,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035639,GO:0036094,GO:0040029,GO:0042254,GO:0042273,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043631,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0045111,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051731,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090730,GO:0097159,GO:0097356,GO:0097367,GO:0097659,GO:0098687,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1902555,GO:1902679,GO:1902911,GO:1903506,GO:1903507,GO:1905348,GO:1905354,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue	5.54e-31
EggNOG OGs	COG1341@1\|root,KOG2750@2759\|Eukaryota
EC	2.7.1.78
Description	polynucleotide 5'-hydroxyl-kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko03009,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1680	Gchil1680	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1575876..1577822 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1680.t1.stop1	Gchil1680.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1575876..1575878 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1680.t1.CDS1	Gchil1680.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1575876..1577822 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1680.t1.exon1	Gchil1680.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1575876..1577822 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1680.t1.start1	Gchil1680.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1577820..1577822 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1680.t1	Gchil1680.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1575876..1577822 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1575876..1577822-
coding sequence from alignment at tig00004403_pilon:1575876..1577822-

mRNA sequence

>Gchil1680.t1 ID=Gchil1680.t1|Name=Gchil1680.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=649bp
MERRKPLNGKRMPSSKSRKRKRPLFQTLPALPVPQKEQPKSSQPKSALNF
QHDSILRVSHLPDGTDENAEEDQDVSDYSSSPPLSPQQSNFTKTEDKQNS
PPIAPSISTSVKDCVQLKSGSAGAAKYVILRVGSQLVPISGSVWISVAHG
SARIFGQTFTSDSDPVLLFSAPYAPFILTIASLNTETSKQHRQSVQRSNL
HPDALTNNRIRQSLQLSEQDTANNGCILVLSSTSSDHQVWEAADSFQVSA
DLRISLREFNEVAGHPSISPGEELVDGMSIYPRTGRFGSFREWPEWNSVC
CRLNDFLNQAVQPHDLRLLVCGGSGSGKSTFTRCIINHLLRSCRAVVLMD
SDVGQSEMSPPGLVAAYCVTEMRMGSGAASNRNIPLAARFFGDTTPREDP
DQYALYIELVCKEALEFSAEHKYPVVINSDGWTNGIGADLLHHLTTKVDP
SHLAQLSLQGHEPRRAIVELASNFREDRCFLLTTPRSERDMCFPPILLRE
LHVASYFSKELAMGRVYNVHIEDVELICVDEKSLSGMPMEGLRAFLVALG
RNVMVDDQTEQDWNIEGFGIVRGCDPETGFLYICTPVCEEKLELCDTLLY
SGGAQLPQALFFSSTSPELLKSRMVPFILAGSVHTAEAMRSRGTLARK*

spliced messenger RNA

>Gchil1680.t1 ID=Gchil1680.t1|Name=Gchil1680.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at tig00004403_pilon:1575876..1577822- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGAAGAAAACCCCTCAACGGAAAACGAATGCCCTCCTCCAAGTC
GCGAAAGCGAAAACGACCTCTATTTCAAACCCTACCTGCTCTTCCTGTAC
CACAAAAGGAGCAGCCCAAAAGCAGTCAACCCAAGTCTGCTTTAAATTTT
CAGCACGACTCCATTCTCAGAGTGAGCCACCTCCCGGACGGTACCGATGA
GAACGCCGAAGAAGATCAGGATGTGTCGGACTACTCCAGCTCTCCTCCTC
TATCTCCGCAGCAATCAAACTTCACTAAAACTGAGGACAAGCAGAATTCT
CCACCAATTGCCCCTTCGATATCTACCTCAGTGAAAGACTGTGTTCAACT
CAAATCAGGTTCTGCGGGGGCAGCAAAGTACGTCATACTTAGAGTTGGCT
CCCAGCTTGTACCGATTTCAGGATCAGTATGGATCTCAGTTGCGCATGGC
AGTGCCAGGATTTTCGGTCAAACTTTCACCAGCGACAGCGACCCGGTTTT
GCTATTTTCTGCCCCCTACGCCCCATTTATCCTCACCATTGCTTCTCTAA
ACACTGAAACTTCCAAACAACATCGTCAATCTGTACAAAGAAGTAACTTA
CACCCAGATGCACTTACAAACAATCGTATCCGCCAATCTTTGCAGCTGTC
CGAACAGGATACGGCGAACAATGGTTGCATTCTCGTTCTGTCGTCCACCT
CTTCAGATCATCAGGTATGGGAGGCTGCAGATTCTTTTCAAGTTTCCGCA
GATCTTCGAATCTCGTTACGCGAATTCAATGAAGTCGCCGGCCATCCATC
CATTTCACCTGGGGAGGAGCTTGTGGACGGTATGTCGATATATCCACGCA
CGGGTAGGTTTGGAAGCTTTAGGGAATGGCCAGAGTGGAACAGTGTATGT
TGTCGTTTGAATGATTTCCTGAACCAGGCGGTACAGCCTCACGACCTAAG
ATTATTAGTATGCGGCGGGAGCGGATCAGGAAAGTCTACATTCACTAGAT
GCATCATAAATCATCTTTTACGGAGTTGTCGCGCTGTTGTCCTCATGGAT
TCAGATGTCGGGCAGTCTGAAATGAGCCCACCTGGACTGGTGGCTGCGTA
TTGTGTCACGGAAATGAGAATGGGTTCGGGGGCGGCCTCCAACAGGAATA
TTCCTCTTGCAGCTCGCTTCTTTGGTGACACAACACCACGAGAAGATCCA
GACCAATACGCGTTATATATCGAACTCGTTTGCAAAGAGGCCCTGGAATT
TTCTGCAGAGCACAAGTACCCCGTTGTCATCAATTCTGACGGCTGGACGA
ATGGCATTGGAGCGGATTTGCTCCATCATCTCACGACAAAAGTTGACCCA
AGTCACCTAGCGCAACTTAGTCTTCAAGGCCATGAACCTCGCCGCGCTAT
TGTAGAACTTGCATCAAATTTCCGGGAAGATCGCTGTTTCCTTCTGACTA
CTCCTCGCAGCGAAAGGGACATGTGCTTTCCCCCAATCTTGCTAAGAGAG
CTTCATGTCGCGTCATACTTTTCAAAAGAACTTGCAATGGGTAGGGTGTA
CAATGTTCACATAGAGGATGTAGAACTTATTTGCGTGGATGAAAAATCTC
TCAGTGGGATGCCGATGGAGGGCTTACGTGCTTTCTTAGTTGCGCTGGGA
AGGAATGTTATGGTCGATGACCAGACAGAACAAGACTGGAATATTGAAGG
ATTTGGTATAGTGAGGGGATGTGACCCGGAGACAGGCTTCTTGTACATTT
GTACTCCTGTTTGTGAAGAAAAGCTAGAGCTATGTGACACACTTCTTTAC
AGTGGAGGGGCTCAGTTGCCTCAAGCTCTATTCTTTTCTTCTACGTCTCC
AGAGCTTCTGAAGTCAAGGATGGTACCTTTTATTCTAGCGGGTTCAGTTC
ACACGGCAGAAGCAATGCGCAGTCGAGGCACGCTGGCTCGGAAATAA

protein sequence of Gchil1680.t1

>Gchil1680.t1 ID=Gchil1680.t1|Name=Gchil1680.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=649bp
MERRKPLNGKRMPSSKSRKRKRPLFQTLPALPVPQKEQPKSSQPKSALNF
QHDSILRVSHLPDGTDENAEEDQDVSDYSSSPPLSPQQSNFTKTEDKQNS
PPIAPSISTSVKDCVQLKSGSAGAAKYVILRVGSQLVPISGSVWISVAHG
SARIFGQTFTSDSDPVLLFSAPYAPFILTIASLNTETSKQHRQSVQRSNL
HPDALTNNRIRQSLQLSEQDTANNGCILVLSSTSSDHQVWEAADSFQVSA
DLRISLREFNEVAGHPSISPGEELVDGMSIYPRTGRFGSFREWPEWNSVC
CRLNDFLNQAVQPHDLRLLVCGGSGSGKSTFTRCIINHLLRSCRAVVLMD
SDVGQSEMSPPGLVAAYCVTEMRMGSGAASNRNIPLAARFFGDTTPREDP
DQYALYIELVCKEALEFSAEHKYPVVINSDGWTNGIGADLLHHLTTKVDP
SHLAQLSLQGHEPRRAIVELASNFREDRCFLLTTPRSERDMCFPPILLRE
LHVASYFSKELAMGRVYNVHIEDVELICVDEKSLSGMPMEGLRAFLVALG
RNVMVDDQTEQDWNIEGFGIVRGCDPETGFLYICTPVCEEKLELCDTLLY
SGGAQLPQALFFSSTSPELLKSRMVPFILAGSVHTAEAMRSRGTLARK*

mRNA from alignment at tig00004403_pilon:1575876..1577822-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1680.t1 ID=Gchil1680.t1|Name=Gchil1680.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1947bp|location=Sequence derived from alignment at tig00004403_pilon:1575876..1577822- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAGAAGAAAACCCCTCAACGGAAAACGAATGCCCTCCTCCAAGTC
GCGAAAGCGAAAACGACCTCTATTTCAAACCCTACCTGCTCTTCCTGTAC
CACAAAAGGAGCAGCCCAAAAGCAGTCAACCCAAGTCTGCTTTAAATTTT
CAGCACGACTCCATTCTCAGAGTGAGCCACCTCCCGGACGGTACCGATGA
GAACGCCGAAGAAGATCAGGATGTGTCGGACTACTCCAGCTCTCCTCCTC
TATCTCCGCAGCAATCAAACTTCACTAAAACTGAGGACAAGCAGAATTCT
CCACCAATTGCCCCTTCGATATCTACCTCAGTGAAAGACTGTGTTCAACT
CAAATCAGGTTCTGCGGGGGCAGCAAAGTACGTCATACTTAGAGTTGGCT
CCCAGCTTGTACCGATTTCAGGATCAGTATGGATCTCAGTTGCGCATGGC
AGTGCCAGGATTTTCGGTCAAACTTTCACCAGCGACAGCGACCCGGTTTT
GCTATTTTCTGCCCCCTACGCCCCATTTATCCTCACCATTGCTTCTCTAA
ACACTGAAACTTCCAAACAACATCGTCAATCTGTACAAAGAAGTAACTTA
CACCCAGATGCACTTACAAACAATCGTATCCGCCAATCTTTGCAGCTGTC
CGAACAGGATACGGCGAACAATGGTTGCATTCTCGTTCTGTCGTCCACCT
CTTCAGATCATCAGGTATGGGAGGCTGCAGATTCTTTTCAAGTTTCCGCA
GATCTTCGAATCTCGTTACGCGAATTCAATGAAGTCGCCGGCCATCCATC
CATTTCACCTGGGGAGGAGCTTGTGGACGGTATGTCGATATATCCACGCA
CGGGTAGGTTTGGAAGCTTTAGGGAATGGCCAGAGTGGAACAGTGTATGT
TGTCGTTTGAATGATTTCCTGAACCAGGCGGTACAGCCTCACGACCTAAG
ATTATTAGTATGCGGCGGGAGCGGATCAGGAAAGTCTACATTCACTAGAT
GCATCATAAATCATCTTTTACGGAGTTGTCGCGCTGTTGTCCTCATGGAT
TCAGATGTCGGGCAGTCTGAAATGAGCCCACCTGGACTGGTGGCTGCGTA
TTGTGTCACGGAAATGAGAATGGGTTCGGGGGCGGCCTCCAACAGGAATA
TTCCTCTTGCAGCTCGCTTCTTTGGTGACACAACACCACGAGAAGATCCA
GACCAATACGCGTTATATATCGAACTCGTTTGCAAAGAGGCCCTGGAATT
TTCTGCAGAGCACAAGTACCCCGTTGTCATCAATTCTGACGGCTGGACGA
ATGGCATTGGAGCGGATTTGCTCCATCATCTCACGACAAAAGTTGACCCA
AGTCACCTAGCGCAACTTAGTCTTCAAGGCCATGAACCTCGCCGCGCTAT
TGTAGAACTTGCATCAAATTTCCGGGAAGATCGCTGTTTCCTTCTGACTA
CTCCTCGCAGCGAAAGGGACATGTGCTTTCCCCCAATCTTGCTAAGAGAG
CTTCATGTCGCGTCATACTTTTCAAAAGAACTTGCAATGGGTAGGGTGTA
CAATGTTCACATAGAGGATGTAGAACTTATTTGCGTGGATGAAAAATCTC
TCAGTGGGATGCCGATGGAGGGCTTACGTGCTTTCTTAGTTGCGCTGGGA
AGGAATGTTATGGTCGATGACCAGACAGAACAAGACTGGAATATTGAAGG
ATTTGGTATAGTGAGGGGATGTGACCCGGAGACAGGCTTCTTGTACATTT
GTACTCCTGTTTGTGAAGAAAAGCTAGAGCTATGTGACACACTTCTTTAC
AGTGGAGGGGCTCAGTTGCCTCAAGCTCTATTCTTTTCTTCTACGTCTCC
AGAGCTTCTGAAGTCAAGGATGGTACCTTTTATTCTAGCGGGTTCAGTTC
ACACGGCAGAAGCAATGCGCAGTCGAGGCACGCTGGCTCGGAAATAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1575876..1577822-

>Gchil1680.t1 ID=Gchil1680.t1|Name=Gchil1680.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1947bp|location=Sequence derived from alignment at tig00004403_pilon:1575876..1577822- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAAGAAGAAAACCCCTCAACGGAAAACGAATGCCCTCCTCCAAGTC
GCGAAAGCGAAAACGACCTCTATTTCAAACCCTACCTGCTCTTCCTGTAC
CACAAAAGGAGCAGCCCAAAAGCAGTCAACCCAAGTCTGCTTTAAATTTT
CAGCACGACTCCATTCTCAGAGTGAGCCACCTCCCGGACGGTACCGATGA
GAACGCCGAAGAAGATCAGGATGTGTCGGACTACTCCAGCTCTCCTCCTC
TATCTCCGCAGCAATCAAACTTCACTAAAACTGAGGACAAGCAGAATTCT
CCACCAATTGCCCCTTCGATATCTACCTCAGTGAAAGACTGTGTTCAACT
CAAATCAGGTTCTGCGGGGGCAGCAAAGTACGTCATACTTAGAGTTGGCT
CCCAGCTTGTACCGATTTCAGGATCAGTATGGATCTCAGTTGCGCATGGC
AGTGCCAGGATTTTCGGTCAAACTTTCACCAGCGACAGCGACCCGGTTTT
GCTATTTTCTGCCCCCTACGCCCCATTTATCCTCACCATTGCTTCTCTAA
ACACTGAAACTTCCAAACAACATCGTCAATCTGTACAAAGAAGTAACTTA
CACCCAGATGCACTTACAAACAATCGTATCCGCCAATCTTTGCAGCTGTC
CGAACAGGATACGGCGAACAATGGTTGCATTCTCGTTCTGTCGTCCACCT
CTTCAGATCATCAGGTATGGGAGGCTGCAGATTCTTTTCAAGTTTCCGCA
GATCTTCGAATCTCGTTACGCGAATTCAATGAAGTCGCCGGCCATCCATC
CATTTCACCTGGGGAGGAGCTTGTGGACGGTATGTCGATATATCCACGCA
CGGGTAGGTTTGGAAGCTTTAGGGAATGGCCAGAGTGGAACAGTGTATGT
TGTCGTTTGAATGATTTCCTGAACCAGGCGGTACAGCCTCACGACCTAAG
ATTATTAGTATGCGGCGGGAGCGGATCAGGAAAGTCTACATTCACTAGAT
GCATCATAAATCATCTTTTACGGAGTTGTCGCGCTGTTGTCCTCATGGAT
TCAGATGTCGGGCAGTCTGAAATGAGCCCACCTGGACTGGTGGCTGCGTA
TTGTGTCACGGAAATGAGAATGGGTTCGGGGGCGGCCTCCAACAGGAATA
TTCCTCTTGCAGCTCGCTTCTTTGGTGACACAACACCACGAGAAGATCCA
GACCAATACGCGTTATATATCGAACTCGTTTGCAAAGAGGCCCTGGAATT
TTCTGCAGAGCACAAGTACCCCGTTGTCATCAATTCTGACGGCTGGACGA
ATGGCATTGGAGCGGATTTGCTCCATCATCTCACGACAAAAGTTGACCCA
AGTCACCTAGCGCAACTTAGTCTTCAAGGCCATGAACCTCGCCGCGCTAT
TGTAGAACTTGCATCAAATTTCCGGGAAGATCGCTGTTTCCTTCTGACTA
CTCCTCGCAGCGAAAGGGACATGTGCTTTCCCCCAATCTTGCTAAGAGAG
CTTCATGTCGCGTCATACTTTTCAAAAGAACTTGCAATGGGTAGGGTGTA
CAATGTTCACATAGAGGATGTAGAACTTATTTGCGTGGATGAAAAATCTC
TCAGTGGGATGCCGATGGAGGGCTTACGTGCTTTCTTAGTTGCGCTGGGA
AGGAATGTTATGGTCGATGACCAGACAGAACAAGACTGGAATATTGAAGG
ATTTGGTATAGTGAGGGGATGTGACCCGGAGACAGGCTTCTTGTACATTT
GTACTCCTGTTTGTGAAGAAAAGCTAGAGCTATGTGACACACTTCTTTAC
AGTGGAGGGGCTCAGTTGCCTCAAGCTCTATTCTTTTCTTCTACGTCTCC
AGAGCTTCTGAAGTCAAGGATGGTACCTTTTATTCTAGCGGGTTCAGTTC
ACACGGCAGAAGCAATGCGCAGTCGAGGCACGCTGGCTCGGAAATAA