Gchil1678.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1678.t1
Unique Name	Gchil1678.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	353

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1568379..1569437 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5762.XP_002678233.1
Preferred name	XRCC6BP1
PFAMs	Peptidase_M76,Trypsin
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18156,ko:K21773
KEGG Pathway	ko04218,map04218
GOs	GO:0000726,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004677,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005958,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0030054,GO:0032991,GO:0033554,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070419,GO:0071704,GO:0071944,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990391
Evalue	6.83e-22
EggNOG OGs	COG5640@1\|root,KOG3314@1\|root,KOG3314@2759\|Eukaryota,KOG3627@2759\|Eukaryota
Description	serine-type endopeptidase activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1678	Gchil1678	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1568379..1569437 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1678.t1.stop1	Gchil1678.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1568379..1568381 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1678.t1.CDS1	Gchil1678.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1568379..1569437 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1678.t1.exon1	Gchil1678.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1568379..1569437 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1678.t1.start1	Gchil1678.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1569435..1569437 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1678.t1	Gchil1678.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1568379..1569437 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1568379..1569437-
coding sequence from alignment at tig00004403_pilon:1568379..1569437-

mRNA sequence

>Gchil1678.t1 ID=Gchil1678.t1|Name=Gchil1678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=353bp
MVLRSIFSTIAIFTASLLLLSESAVVAKEGNDSNLDSASSRVIHGDPVTD
KNEYPFVVDLSRHDVAISSSRFCTGTLVTPDIVLTAAHCVLNDGYDSPTF
ATIGRIELEDKHSQNEHAQTFRTIASIAHPEYTGLGSPNDVALVLLNESS
SAPIVKLADSSPKKDDVAWVVGYGIQMLGTVEKSAQPVEVLSGRLQKTAL
RIQEKSFCDGPEGRWKTADGMLCTAGVKEGSSACRGDSGGGLFLLEQTSE
KEREAVQVGVVSYGDAQCASEESGVFTDVASNLEWIKASAEKLQAAFFPG
QPAAQPQDAALVEPKDAQLSITSPDTKGETDNGNDRKFAPFSTSQQVAAK
TA*

spliced messenger RNA

>Gchil1678.t1 ID=Gchil1678.t1|Name=Gchil1678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004403_pilon:1568379..1569437- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTGCGTTCAATCTTTTCTACCATTGCTATCTTTACAGCATCGCT
TTTGTTGCTCTCAGAGTCTGCGGTTGTCGCGAAGGAGGGCAATGACTCCA
ACCTCGATAGCGCGTCATCAAGAGTGATTCACGGGGACCCCGTCACCGAT
AAGAACGAGTACCCCTTTGTTGTGGATCTATCCCGTCATGACGTTGCCAT
CTCATCGTCTCGTTTTTGCACGGGAACTTTGGTCACACCGGACATTGTTC
TCACCGCAGCACACTGTGTATTAAATGACGGCTACGACTCACCTACGTTT
GCCACAATTGGTCGCATAGAACTTGAAGACAAGCACTCACAAAACGAACA
TGCTCAGACATTTAGAACAATAGCAAGCATCGCCCATCCCGAGTACACTG
GACTTGGTTCTCCAAACGATGTAGCTCTCGTTCTACTTAACGAATCATCC
TCCGCGCCCATCGTCAAGTTGGCGGATTCGAGTCCGAAGAAAGATGACGT
CGCTTGGGTGGTCGGATATGGCATCCAGATGTTGGGTACAGTAGAAAAAT
CTGCGCAACCCGTCGAAGTTCTTTCAGGAAGGCTTCAGAAAACAGCCCTT
CGAATCCAAGAAAAGTCATTTTGTGACGGACCAGAAGGCCGTTGGAAGAC
GGCAGATGGCATGCTTTGCACTGCCGGTGTGAAGGAGGGTTCGTCTGCGT
GTCGTGGTGACTCAGGAGGAGGTCTATTTTTGCTGGAACAAACTTCTGAG
AAGGAACGCGAAGCAGTTCAGGTGGGTGTTGTCAGTTATGGAGACGCGCA
ATGTGCATCAGAGGAGTCTGGAGTGTTCACGGATGTTGCAAGTAATCTAG
AATGGATCAAAGCGTCTGCAGAAAAGCTACAAGCCGCTTTTTTCCCAGGC
CAACCGGCAGCGCAACCTCAGGATGCAGCCTTGGTTGAGCCCAAGGATGC
CCAGCTCAGTATAACATCGCCGGATACAAAAGGTGAAACAGACAACGGAA
ATGATCGAAAATTCGCTCCATTCTCGACATCCCAACAGGTTGCTGCCAAG
ACCGCATAG

protein sequence of Gchil1678.t1

>Gchil1678.t1 ID=Gchil1678.t1|Name=Gchil1678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=353bp
MVLRSIFSTIAIFTASLLLLSESAVVAKEGNDSNLDSASSRVIHGDPVTD
KNEYPFVVDLSRHDVAISSSRFCTGTLVTPDIVLTAAHCVLNDGYDSPTF
ATIGRIELEDKHSQNEHAQTFRTIASIAHPEYTGLGSPNDVALVLLNESS
SAPIVKLADSSPKKDDVAWVVGYGIQMLGTVEKSAQPVEVLSGRLQKTAL
RIQEKSFCDGPEGRWKTADGMLCTAGVKEGSSACRGDSGGGLFLLEQTSE
KEREAVQVGVVSYGDAQCASEESGVFTDVASNLEWIKASAEKLQAAFFPG
QPAAQPQDAALVEPKDAQLSITSPDTKGETDNGNDRKFAPFSTSQQVAAK
TA*

mRNA from alignment at tig00004403_pilon:1568379..1569437-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1678.t1 ID=Gchil1678.t1|Name=Gchil1678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00004403_pilon:1568379..1569437- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTTGCGTTCAATCTTTTCTACCATTGCTATCTTTACAGCATCGCT
TTTGTTGCTCTCAGAGTCTGCGGTTGTCGCGAAGGAGGGCAATGACTCCA
ACCTCGATAGCGCGTCATCAAGAGTGATTCACGGGGACCCCGTCACCGAT
AAGAACGAGTACCCCTTTGTTGTGGATCTATCCCGTCATGACGTTGCCAT
CTCATCGTCTCGTTTTTGCACGGGAACTTTGGTCACACCGGACATTGTTC
TCACCGCAGCACACTGTGTATTAAATGACGGCTACGACTCACCTACGTTT
GCCACAATTGGTCGCATAGAACTTGAAGACAAGCACTCACAAAACGAACA
TGCTCAGACATTTAGAACAATAGCAAGCATCGCCCATCCCGAGTACACTG
GACTTGGTTCTCCAAACGATGTAGCTCTCGTTCTACTTAACGAATCATCC
TCCGCGCCCATCGTCAAGTTGGCGGATTCGAGTCCGAAGAAAGATGACGT
CGCTTGGGTGGTCGGATATGGCATCCAGATGTTGGGTACAGTAGAAAAAT
CTGCGCAACCCGTCGAAGTTCTTTCAGGAAGGCTTCAGAAAACAGCCCTT
CGAATCCAAGAAAAGTCATTTTGTGACGGACCAGAAGGCCGTTGGAAGAC
GGCAGATGGCATGCTTTGCACTGCCGGTGTGAAGGAGGGTTCGTCTGCGT
GTCGTGGTGACTCAGGAGGAGGTCTATTTTTGCTGGAACAAACTTCTGAG
AAGGAACGCGAAGCAGTTCAGGTGGGTGTTGTCAGTTATGGAGACGCGCA
ATGTGCATCAGAGGAGTCTGGAGTGTTCACGGATGTTGCAAGTAATCTAG
AATGGATCAAAGCGTCTGCAGAAAAGCTACAAGCCGCTTTTTTCCCAGGC
CAACCGGCAGCGCAACCTCAGGATGCAGCCTTGGTTGAGCCCAAGGATGC
CCAGCTCAGTATAACATCGCCGGATACAAAAGGTGAAACAGACAACGGAA
ATGATCGAAAATTCGCTCCATTCTCGACATCCCAACAGGTTGCTGCCAAG
ACCGCATAG

Coding sequence (CDS) from alignment at tig00004403_pilon:1568379..1569437-

>Gchil1678.t1 ID=Gchil1678.t1|Name=Gchil1678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00004403_pilon:1568379..1569437- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTTGCGTTCAATCTTTTCTACCATTGCTATCTTTACAGCATCGCT
TTTGTTGCTCTCAGAGTCTGCGGTTGTCGCGAAGGAGGGCAATGACTCCA
ACCTCGATAGCGCGTCATCAAGAGTGATTCACGGGGACCCCGTCACCGAT
AAGAACGAGTACCCCTTTGTTGTGGATCTATCCCGTCATGACGTTGCCAT
CTCATCGTCTCGTTTTTGCACGGGAACTTTGGTCACACCGGACATTGTTC
TCACCGCAGCACACTGTGTATTAAATGACGGCTACGACTCACCTACGTTT
GCCACAATTGGTCGCATAGAACTTGAAGACAAGCACTCACAAAACGAACA
TGCTCAGACATTTAGAACAATAGCAAGCATCGCCCATCCCGAGTACACTG
GACTTGGTTCTCCAAACGATGTAGCTCTCGTTCTACTTAACGAATCATCC
TCCGCGCCCATCGTCAAGTTGGCGGATTCGAGTCCGAAGAAAGATGACGT
CGCTTGGGTGGTCGGATATGGCATCCAGATGTTGGGTACAGTAGAAAAAT
CTGCGCAACCCGTCGAAGTTCTTTCAGGAAGGCTTCAGAAAACAGCCCTT
CGAATCCAAGAAAAGTCATTTTGTGACGGACCAGAAGGCCGTTGGAAGAC
GGCAGATGGCATGCTTTGCACTGCCGGTGTGAAGGAGGGTTCGTCTGCGT
GTCGTGGTGACTCAGGAGGAGGTCTATTTTTGCTGGAACAAACTTCTGAG
AAGGAACGCGAAGCAGTTCAGGTGGGTGTTGTCAGTTATGGAGACGCGCA
ATGTGCATCAGAGGAGTCTGGAGTGTTCACGGATGTTGCAAGTAATCTAG
AATGGATCAAAGCGTCTGCAGAAAAGCTACAAGCCGCTTTTTTCCCAGGC
CAACCGGCAGCGCAACCTCAGGATGCAGCCTTGGTTGAGCCCAAGGATGC
CCAGCTCAGTATAACATCGCCGGATACAAAAGGTGAAACAGACAACGGAA
ATGATCGAAAATTCGCTCCATTCTCGACATCCCAACAGGTTGCTGCCAAG
ACCGCATAG