Gchil1675.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1675.t1
Unique NameGchil1675.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1461305..1462125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog984962.XP_009543009.1
PFAMsFAA_hydrolase
Max annot lvl4751|Fungi
KEGG rclassRC00326,RC00446
KEGG koko:K01557
KEGG ReactionR01085
KEGG Pathwayko00350,ko01100,ko01120,map00350,map01100,map01120
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0016787,GO:0016822,GO:0016823,GO:0019439,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0047621,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Evalue1.99e-63
EggNOG OGsCOG0179@1|root,KOG1535@2759|Eukaryota,39TDF@33154|Opisthokonta,3NV1X@4751|Fungi,3UZ3A@5204|Basidiomycota,226P1@155619|Agaricomycetes,3H4FP@355688|Agaricomycetes incertae sedis
EC3.7.1.5
DescriptionFumarylacetoacetate (FAA) hydrolase family
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1675Gchil1675Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1461305..1462125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1675.t1Gchil1675.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1461305..1462125 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1675.t1.stop1Gchil1675.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1461305..1461307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1675.t1.CDS1Gchil1675.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1461305..1461774 -
Gchil1675.t1.CDS2Gchil1675.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1461842..1461992 -
Gchil1675.t1.CDS3Gchil1675.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1462063..1462125 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1675.t1.exon1Gchil1675.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1461305..1461774 -
Gchil1675.t1.exon2Gchil1675.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1461842..1461992 -
Gchil1675.t1.exon3Gchil1675.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1462063..1462125 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1675.t1.intron1Gchil1675.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1461775..1461841 -
Gchil1675.t1.intron2Gchil1675.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1461993..1462062 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1675.t1.start1Gchil1675.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1462123..1462125 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1675.t1 ID=Gchil1675.t1|Name=Gchil1675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MANALRHADALLQKASRKAIAVGLNYIDHAKEMGSKADRIAPIWFFKPST
SYLPQNGGPIRIPPTAVAHHEVELGVVIGRPARDVRAADAAKHIAGYVCA
IDVTARNWQSEAKKVGRPWAIAKGCDTFLPLSTVLPPDSIVMDEKGVVDV
NLYLDVNGERRQYGSTKHMIWTIPELIEHISSHVTLEEWDLILTGTPSGV
GEFRPGDKVTAGIEGLVEMEFGAVVRS*
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spliced messenger RNA

>Gchil1675.t1 ID=Gchil1675.t1|Name=Gchil1675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004403_pilon:1461305..1462125- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACGCTCTTCGCCATGCGGATGCCTTGCTTCAGAAAGCATCACG
AAAAGCAATAGCGGTGGGACTAAATTATATCGATCATGCAAAAGAAATGG
GTTCTAAAGCGGATCGGATAGCGCCTATTTGGTTTTTCAAACCATCCACA
TCATATCTTCCTCAAAACGGGGGCCCGATCCGAATCCCACCGACCGCTGT
TGCTCATCATGAAGTGGAGCTTGGCGTTGTCATAGGTCGGCCTGCAAGAG
ATGTTCGCGCAGCCGATGCTGCAAAACATATCGCAGGCTATGTATGTGCG
ATTGATGTAACTGCAAGAAATTGGCAATCGGAAGCGAAAAAAGTTGGAAG
ACCGTGGGCGATAGCAAAAGGATGTGATACATTTCTGCCGTTATCTACAG
TGCTTCCCCCTGATTCCATTGTAATGGACGAAAAGGGCGTTGTTGACGTA
AATCTTTATCTCGACGTTAACGGCGAACGTAGACAGTATGGATCGACAAA
GCATATGATATGGACTATTCCGGAGCTCATCGAACACATATCGAGCCACG
TAACGCTGGAGGAATGGGACCTTATTCTGACTGGAACACCCTCCGGAGTC
GGAGAATTTCGCCCAGGTGATAAAGTCACAGCTGGAATCGAAGGTTTGGT
AGAAATGGAATTCGGGGCAGTGGTCAGAAGCTGA
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protein sequence of Gchil1675.t1

>Gchil1675.t1 ID=Gchil1675.t1|Name=Gchil1675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MANALRHADALLQKASRKAIAVGLNYIDHAKEMGSKADRIAPIWFFKPST
SYLPQNGGPIRIPPTAVAHHEVELGVVIGRPARDVRAADAAKHIAGYVCA
IDVTARNWQSEAKKVGRPWAIAKGCDTFLPLSTVLPPDSIVMDEKGVVDV
NLYLDVNGERRQYGSTKHMIWTIPELIEHISSHVTLEEWDLILTGTPSGV
GEFRPGDKVTAGIEGLVEMEFGAVVRS*
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mRNA from alignment at tig00004403_pilon:1461305..1462125-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1675.t1 ID=Gchil1675.t1|Name=Gchil1675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=821bp|location=Sequence derived from alignment at tig00004403_pilon:1461305..1462125- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAACGCTCTTCGCCATGCGGATGCCTTGCTTCAGAAAGCATCACG
AAAAGCAATAGCGGTACGGGTAAAATCTGCCTGGTCTTATGTATCGTTCC
ATGACTGGATCATTCTAACTTTCTCTACCTCAGGTGGGACTAAATTATAT
CGATCATGCAAAAGAAATGGGTTCTAAAGCGGATCGGATAGCGCCTATTT
GGTTTTTCAAACCATCCACATCATATCTTCCTCAAAACGGGGGCCCGATC
CGAATCCCACCGACCGCTGTTGCTCATCATGAAGGTACATTTCTATTCTT
CATCTTTGCACATCCCCTCTGCAAATTTACTGACCCAACCTTCCCTCTCA
GTGGAGCTTGGCGTTGTCATAGGTCGGCCTGCAAGAGATGTTCGCGCAGC
CGATGCTGCAAAACATATCGCAGGCTATGTATGTGCGATTGATGTAACTG
CAAGAAATTGGCAATCGGAAGCGAAAAAAGTTGGAAGACCGTGGGCGATA
GCAAAAGGATGTGATACATTTCTGCCGTTATCTACAGTGCTTCCCCCTGA
TTCCATTGTAATGGACGAAAAGGGCGTTGTTGACGTAAATCTTTATCTCG
ACGTTAACGGCGAACGTAGACAGTATGGATCGACAAAGCATATGATATGG
ACTATTCCGGAGCTCATCGAACACATATCGAGCCACGTAACGCTGGAGGA
ATGGGACCTTATTCTGACTGGAACACCCTCCGGAGTCGGAGAATTTCGCC
CAGGTGATAAAGTCACAGCTGGAATCGAAGGTTTGGTAGAAATGGAATTC
GGGGCAGTGGTCAGAAGCTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1461305..1462125-

>Gchil1675.t1 ID=Gchil1675.t1|Name=Gchil1675.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004403_pilon:1461305..1462125- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAAACGCTCTTCGCCATGCGGATGCCTTGCTTCAGAAAGCATCACG
AAAAGCAATAGCGGTGGGACTAAATTATATCGATCATGCAAAAGAAATGG
GTTCTAAAGCGGATCGGATAGCGCCTATTTGGTTTTTCAAACCATCCACA
TCATATCTTCCTCAAAACGGGGGCCCGATCCGAATCCCACCGACCGCTGT
TGCTCATCATGAAGTGGAGCTTGGCGTTGTCATAGGTCGGCCTGCAAGAG
ATGTTCGCGCAGCCGATGCTGCAAAACATATCGCAGGCTATGTATGTGCG
ATTGATGTAACTGCAAGAAATTGGCAATCGGAAGCGAAAAAAGTTGGAAG
ACCGTGGGCGATAGCAAAAGGATGTGATACATTTCTGCCGTTATCTACAG
TGCTTCCCCCTGATTCCATTGTAATGGACGAAAAGGGCGTTGTTGACGTA
AATCTTTATCTCGACGTTAACGGCGAACGTAGACAGTATGGATCGACAAA
GCATATGATATGGACTATTCCGGAGCTCATCGAACACATATCGAGCCACG
TAACGCTGGAGGAATGGGACCTTATTCTGACTGGAACACCCTCCGGAGTC
GGAGAATTTCGCCCAGGTGATAAAGTCACAGCTGGAATCGAAGGTTTGGT
AGAAATGGAATTCGGGGCAGTGGTCAGAAGCTGA
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