Gchil1672.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1672.t1
Unique NameGchil1672.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1456365..1456877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008614288.1
PFAMszf-RING_2,zinc_ribbon_9
Max annot lvl2759|Eukaryota
KEGG koko:K11982
Evalue2.95e-27
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1672Gchil1672Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1456365..1456877 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1672.t1.start1Gchil1672.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1456365..1456367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1672.t1.CDS1Gchil1672.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1456365..1456877 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1672.t1.exon1Gchil1672.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1456365..1456877 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1672.t1.stop1Gchil1672.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1456875..1456877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1672.t1Gchil1672.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1456365..1456877 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1672.t1 ID=Gchil1672.t1|Name=Gchil1672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=171bp
MELYFQEHDISGDDTRRRSTTRPPIVLRFAASLAELYSTHRQDAEDEHLR
EQVRAVLAELAQGDPSVSGTPPASEQALRTLPYINVEKNEKGQLSSCPIC
TEQFELRQVARKLPCAHVFHSDCVIPWLKQHCTCPMCRRELPTDNRQYEE
EKKRQRRQAAVSSMQSFMYS*
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spliced messenger RNA

>Gchil1672.t1 ID=Gchil1672.t1|Name=Gchil1672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00004403_pilon:1456365..1456877+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTCTACTTTCAGGAACATGACATCAGCGGTGATGATACGCGACG
TCGATCGACGACGCGACCGCCAATTGTTCTTCGTTTTGCCGCTTCTCTCG
CCGAGCTCTACTCCACACATCGCCAAGACGCCGAAGATGAGCATCTGAGA
GAGCAGGTTCGCGCGGTGCTAGCAGAACTGGCTCAAGGAGACCCCTCAGT
GTCGGGAACCCCACCGGCTTCTGAACAAGCCCTACGAACGTTGCCGTACA
TCAACGTCGAGAAGAATGAAAAAGGTCAGCTTAGCTCATGCCCGATATGC
ACCGAGCAGTTCGAGCTGCGCCAAGTAGCGAGAAAGCTACCATGTGCTCA
TGTATTCCATTCAGACTGTGTCATTCCATGGTTGAAACAACATTGCACAT
GTCCCATGTGCAGAAGAGAACTACCTACAGACAATCGTCAATACGAAGAA
GAGAAGAAACGACAGAGAAGGCAGGCTGCAGTTTCATCAATGCAGTCGTT
TATGTACAGTTGA
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protein sequence of Gchil1672.t1

>Gchil1672.t1 ID=Gchil1672.t1|Name=Gchil1672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=171bp
MELYFQEHDISGDDTRRRSTTRPPIVLRFAASLAELYSTHRQDAEDEHLR
EQVRAVLAELAQGDPSVSGTPPASEQALRTLPYINVEKNEKGQLSSCPIC
TEQFELRQVARKLPCAHVFHSDCVIPWLKQHCTCPMCRRELPTDNRQYEE
EKKRQRRQAAVSSMQSFMYS*
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mRNA from alignment at tig00004403_pilon:1456365..1456877+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1672.t1 ID=Gchil1672.t1|Name=Gchil1672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00004403_pilon:1456365..1456877+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTCTACTTTCAGGAACATGACATCAGCGGTGATGATACGCGACG
TCGATCGACGACGCGACCGCCAATTGTTCTTCGTTTTGCCGCTTCTCTCG
CCGAGCTCTACTCCACACATCGCCAAGACGCCGAAGATGAGCATCTGAGA
GAGCAGGTTCGCGCGGTGCTAGCAGAACTGGCTCAAGGAGACCCCTCAGT
GTCGGGAACCCCACCGGCTTCTGAACAAGCCCTACGAACGTTGCCGTACA
TCAACGTCGAGAAGAATGAAAAAGGTCAGCTTAGCTCATGCCCGATATGC
ACCGAGCAGTTCGAGCTGCGCCAAGTAGCGAGAAAGCTACCATGTGCTCA
TGTATTCCATTCAGACTGTGTCATTCCATGGTTGAAACAACATTGCACAT
GTCCCATGTGCAGAAGAGAACTACCTACAGACAATCGTCAATACGAAGAA
GAGAAGAAACGACAGAGAAGGCAGGCTGCAGTTTCATCAATGCAGTCGTT
TATGTACAGTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1456365..1456877+

>Gchil1672.t1 ID=Gchil1672.t1|Name=Gchil1672.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00004403_pilon:1456365..1456877+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTCTACTTTCAGGAACATGACATCAGCGGTGATGATACGCGACG
TCGATCGACGACGCGACCGCCAATTGTTCTTCGTTTTGCCGCTTCTCTCG
CCGAGCTCTACTCCACACATCGCCAAGACGCCGAAGATGAGCATCTGAGA
GAGCAGGTTCGCGCGGTGCTAGCAGAACTGGCTCAAGGAGACCCCTCAGT
GTCGGGAACCCCACCGGCTTCTGAACAAGCCCTACGAACGTTGCCGTACA
TCAACGTCGAGAAGAATGAAAAAGGTCAGCTTAGCTCATGCCCGATATGC
ACCGAGCAGTTCGAGCTGCGCCAAGTAGCGAGAAAGCTACCATGTGCTCA
TGTATTCCATTCAGACTGTGTCATTCCATGGTTGAAACAACATTGCACAT
GTCCCATGTGCAGAAGAGAACTACCTACAGACAATCGTCAATACGAAGAA
GAGAAGAAACGACAGAGAAGGCAGGCTGCAGTTTCATCAATGCAGTCGTT
TATGTACAGTTGA
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