Gchil1671.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1671.t1
Unique Name	Gchil1671.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1453908..1454759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMB115CT
Max annot lvl	2759\|Eukaryota
Evalue	5.87e-08
EggNOG OGs	2CGEV@1\|root,2S9K2@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1671	Gchil1671	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1453908..1454759 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1671.t1.start1	Gchil1671.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1453908..1453910 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1671.t1.CDS1	Gchil1671.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1453908..1454759 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1671.t1.exon1	Gchil1671.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1453908..1454759 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1671.t1.stop1	Gchil1671.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1454757..1454759 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1671.t1	Gchil1671.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1453908..1454759 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1453908..1454759+
coding sequence from alignment at tig00004403_pilon:1453908..1454759+

mRNA sequence

>Gchil1671.t1 ID=Gchil1671.t1|Name=Gchil1671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=284bp
MMLREAILARQDAVLQGQLQKLGRTNAVAVSNEGQASSHFRVHGWRWHHL
GIIRDLMRLERKAVKKRGALCQVRRTDESRALRRQMHDALQYIIHDNWAL
HNVVEHKLFLPWIMSRDGDETNGEAVNVIGSERRRLQRHAQMLDERMAKW
SECNTHNVVRMSQEQCESELQVMISNVQRLRRNASLLFEVSEQVLVPRVK
LCFSEADQLRFNSTVLKHISGRQARVSLVIFRDALDLKKQPVVARSDDVH
NFERDVPAPIRRVGVPFWRKRFVGDRTRFLTDE*

spliced messenger RNA

>Gchil1671.t1 ID=Gchil1671.t1|Name=Gchil1671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004403_pilon:1453908..1454759+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTGAGGGAGGCGATATTGGCAAGGCAAGATGCTGTGCTCCAAGG
GCAGCTGCAAAAACTAGGTCGCACAAACGCGGTGGCAGTCTCGAACGAGG
GGCAGGCATCGTCGCATTTTCGCGTGCACGGGTGGCGATGGCACCATCTA
GGAATCATTCGCGACCTGATGCGTCTGGAAAGGAAGGCGGTGAAAAAGAG
GGGTGCGCTTTGTCAAGTGCGAAGGACAGACGAGTCCAGGGCGCTACGGC
GACAGATGCATGACGCTTTGCAGTACATCATTCATGATAACTGGGCGCTT
CACAACGTTGTGGAGCACAAGCTGTTTCTGCCGTGGATCATGAGCAGGGA
TGGGGACGAAACGAACGGGGAGGCTGTGAATGTAATCGGCAGTGAACGCA
GAAGACTGCAGCGACATGCGCAAATGCTGGATGAACGAATGGCAAAGTGG
AGCGAGTGCAACACGCACAATGTGGTGAGAATGAGCCAAGAGCAGTGTGA
GAGCGAACTGCAAGTGATGATAAGCAACGTACAGAGGCTGCGTCGCAACG
CGTCGCTGCTGTTTGAGGTGTCTGAACAGGTGTTGGTGCCGCGCGTGAAG
CTGTGCTTCTCTGAGGCGGATCAGCTGCGATTTAACTCAACGGTGCTCAA
GCACATTTCGGGGAGACAAGCTCGCGTTTCGTTGGTTATCTTCCGAGATG
CGCTCGACTTGAAGAAGCAGCCGGTTGTGGCGCGCAGCGACGACGTGCAC
AACTTTGAGCGCGACGTTCCCGCGCCCATTCGCCGCGTGGGCGTTCCGTT
TTGGAGGAAGCGCTTTGTAGGCGATAGGACGCGCTTTCTGACCGACGAAT
GA

protein sequence of Gchil1671.t1

>Gchil1671.t1 ID=Gchil1671.t1|Name=Gchil1671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=284bp
MMLREAILARQDAVLQGQLQKLGRTNAVAVSNEGQASSHFRVHGWRWHHL
GIIRDLMRLERKAVKKRGALCQVRRTDESRALRRQMHDALQYIIHDNWAL
HNVVEHKLFLPWIMSRDGDETNGEAVNVIGSERRRLQRHAQMLDERMAKW
SECNTHNVVRMSQEQCESELQVMISNVQRLRRNASLLFEVSEQVLVPRVK
LCFSEADQLRFNSTVLKHISGRQARVSLVIFRDALDLKKQPVVARSDDVH
NFERDVPAPIRRVGVPFWRKRFVGDRTRFLTDE*

mRNA from alignment at tig00004403_pilon:1453908..1454759+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1671.t1 ID=Gchil1671.t1|Name=Gchil1671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00004403_pilon:1453908..1454759+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCTGAGGGAGGCGATATTGGCAAGGCAAGATGCTGTGCTCCAAGG
GCAGCTGCAAAAACTAGGTCGCACAAACGCGGTGGCAGTCTCGAACGAGG
GGCAGGCATCGTCGCATTTTCGCGTGCACGGGTGGCGATGGCACCATCTA
GGAATCATTCGCGACCTGATGCGTCTGGAAAGGAAGGCGGTGAAAAAGAG
GGGTGCGCTTTGTCAAGTGCGAAGGACAGACGAGTCCAGGGCGCTACGGC
GACAGATGCATGACGCTTTGCAGTACATCATTCATGATAACTGGGCGCTT
CACAACGTTGTGGAGCACAAGCTGTTTCTGCCGTGGATCATGAGCAGGGA
TGGGGACGAAACGAACGGGGAGGCTGTGAATGTAATCGGCAGTGAACGCA
GAAGACTGCAGCGACATGCGCAAATGCTGGATGAACGAATGGCAAAGTGG
AGCGAGTGCAACACGCACAATGTGGTGAGAATGAGCCAAGAGCAGTGTGA
GAGCGAACTGCAAGTGATGATAAGCAACGTACAGAGGCTGCGTCGCAACG
CGTCGCTGCTGTTTGAGGTGTCTGAACAGGTGTTGGTGCCGCGCGTGAAG
CTGTGCTTCTCTGAGGCGGATCAGCTGCGATTTAACTCAACGGTGCTCAA
GCACATTTCGGGGAGACAAGCTCGCGTTTCGTTGGTTATCTTCCGAGATG
CGCTCGACTTGAAGAAGCAGCCGGTTGTGGCGCGCAGCGACGACGTGCAC
AACTTTGAGCGCGACGTTCCCGCGCCCATTCGCCGCGTGGGCGTTCCGTT
TTGGAGGAAGCGCTTTGTAGGCGATAGGACGCGCTTTCTGACCGACGAAT
GA

Coding sequence (CDS) from alignment at tig00004403_pilon:1453908..1454759+

>Gchil1671.t1 ID=Gchil1671.t1|Name=Gchil1671.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00004403_pilon:1453908..1454759+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGCTGAGGGAGGCGATATTGGCAAGGCAAGATGCTGTGCTCCAAGG
GCAGCTGCAAAAACTAGGTCGCACAAACGCGGTGGCAGTCTCGAACGAGG
GGCAGGCATCGTCGCATTTTCGCGTGCACGGGTGGCGATGGCACCATCTA
GGAATCATTCGCGACCTGATGCGTCTGGAAAGGAAGGCGGTGAAAAAGAG
GGGTGCGCTTTGTCAAGTGCGAAGGACAGACGAGTCCAGGGCGCTACGGC
GACAGATGCATGACGCTTTGCAGTACATCATTCATGATAACTGGGCGCTT
CACAACGTTGTGGAGCACAAGCTGTTTCTGCCGTGGATCATGAGCAGGGA
TGGGGACGAAACGAACGGGGAGGCTGTGAATGTAATCGGCAGTGAACGCA
GAAGACTGCAGCGACATGCGCAAATGCTGGATGAACGAATGGCAAAGTGG
AGCGAGTGCAACACGCACAATGTGGTGAGAATGAGCCAAGAGCAGTGTGA
GAGCGAACTGCAAGTGATGATAAGCAACGTACAGAGGCTGCGTCGCAACG
CGTCGCTGCTGTTTGAGGTGTCTGAACAGGTGTTGGTGCCGCGCGTGAAG
CTGTGCTTCTCTGAGGCGGATCAGCTGCGATTTAACTCAACGGTGCTCAA
GCACATTTCGGGGAGACAAGCTCGCGTTTCGTTGGTTATCTTCCGAGATG
CGCTCGACTTGAAGAAGCAGCCGGTTGTGGCGCGCAGCGACGACGTGCAC
AACTTTGAGCGCGACGTTCCCGCGCCCATTCGCCGCGTGGGCGTTCCGTT
TTGGAGGAAGCGCTTTGTAGGCGATAGGACGCGCTTTCTGACCGACGAAT
GA