Gchil1664.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1664.t1
Unique NameGchil1664.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1436911..1437903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000002232
Preferred nameNSMCE4A
PFAMsNse4-Nse3_bdg,Nse4_C
Max annot lvl33208|Metazoa
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016604,GO:0030915,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234,GO:2001020,GO:2001022
Evalue3.47e-17
EggNOG OGsCOG5125@1|root,KOG2866@2759|Eukaryota,39GJI@33154|Opisthokonta,3BF2I@33208|Metazoa,3CYZH@33213|Bilateria,484ZN@7711|Chordata,48X5M@7742|Vertebrata,4GU7S@8782|Aves
DescriptionNon-structural maintenance of chromosomes element 4 homolog A
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1664Gchil1664Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1436911..1437903 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1664.t1.stop1Gchil1664.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1436911..1436913 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1664.t1.CDS1Gchil1664.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1436911..1437903 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1664.t1.exon1Gchil1664.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1436911..1437903 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1664.t1.start1Gchil1664.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1437901..1437903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1664.t1Gchil1664.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1436911..1437903 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1664.t1 ID=Gchil1664.t1|Name=Gchil1664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=331bp
MSQVNQEAVENRRKATIILKELREHQQQVEADKEEATDLRSETLNEHFEK
AAKNLEKAKTADQALVDAQIFHKLGVYSKRQAEQLQTGLRTYDIKTFTDN
LIAKLRRANAEKYGEEEEQAQNVSVNFLDIGRSVFDRWKTVHFQDSHFGN
APKEVVKKVGERKRPERIRKGGPATKPNELRPTDMEETETDKQVAEMKRE
LQRRKRCNFWLFVIDPKSFPRSVENVFHSSFLVKEKFAALDMKSEAEPTI
RYVDPMADEMDDEEHEKRGAEEYIGNSQFIMGFDRNLWQEIIRKHNIRKC
LFPPKKRMNEDEQYRQLQAYEQEEMESASF*
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spliced messenger RNA

>Gchil1664.t1 ID=Gchil1664.t1|Name=Gchil1664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00004403_pilon:1436911..1437903- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCAAGTCAACCAAGAAGCGGTGGAAAATAGAAGAAAAGCCACCAT
TATTCTCAAGGAGCTTCGCGAACATCAACAGCAAGTTGAAGCAGATAAGG
AGGAAGCCACAGACCTCCGTTCGGAAACTCTAAACGAGCATTTCGAGAAA
GCCGCCAAGAATCTAGAGAAAGCAAAAACTGCCGATCAAGCATTGGTGGA
CGCCCAGATTTTTCACAAGCTCGGAGTGTACTCCAAACGTCAGGCCGAAC
AGCTGCAAACAGGGTTGCGTACATATGACATCAAGACGTTTACCGACAAT
CTCATTGCAAAGTTGCGTCGCGCCAATGCAGAAAAGTATGGCGAAGAAGA
GGAACAAGCTCAAAACGTTTCGGTTAATTTTCTAGATATTGGAAGAAGTG
TGTTCGACAGATGGAAGACGGTGCACTTCCAAGATTCGCATTTTGGAAAC
GCACCGAAAGAGGTAGTTAAGAAAGTCGGAGAACGAAAGAGACCAGAGAG
AATCAGGAAGGGCGGTCCTGCCACCAAGCCAAATGAACTACGACCTACAG
ATATGGAAGAAACCGAAACCGACAAGCAAGTAGCAGAAATGAAGCGGGAA
TTGCAACGCAGAAAACGCTGCAACTTCTGGCTGTTTGTGATCGATCCGAA
AAGCTTTCCTCGCTCTGTTGAAAATGTTTTCCATTCATCCTTCCTCGTCA
AGGAAAAATTCGCTGCTCTTGATATGAAGAGTGAAGCTGAACCAACGATT
AGATATGTCGACCCCATGGCGGATGAGATGGATGACGAGGAACATGAAAA
AAGGGGCGCTGAGGAATATATTGGTAATTCACAGTTCATCATGGGTTTCG
ATAGAAATTTATGGCAAGAAATTATTCGCAAGCACAACATTCGAAAATGC
CTTTTCCCTCCAAAGAAAAGAATGAACGAGGATGAGCAATACCGACAACT
GCAAGCGTATGAACAAGAAGAAATGGAATCCGCCTCGTTTTGA
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protein sequence of Gchil1664.t1

>Gchil1664.t1 ID=Gchil1664.t1|Name=Gchil1664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=331bp
MSQVNQEAVENRRKATIILKELREHQQQVEADKEEATDLRSETLNEHFEK
AAKNLEKAKTADQALVDAQIFHKLGVYSKRQAEQLQTGLRTYDIKTFTDN
LIAKLRRANAEKYGEEEEQAQNVSVNFLDIGRSVFDRWKTVHFQDSHFGN
APKEVVKKVGERKRPERIRKGGPATKPNELRPTDMEETETDKQVAEMKRE
LQRRKRCNFWLFVIDPKSFPRSVENVFHSSFLVKEKFAALDMKSEAEPTI
RYVDPMADEMDDEEHEKRGAEEYIGNSQFIMGFDRNLWQEIIRKHNIRKC
LFPPKKRMNEDEQYRQLQAYEQEEMESASF*
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mRNA from alignment at tig00004403_pilon:1436911..1437903-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1664.t1 ID=Gchil1664.t1|Name=Gchil1664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00004403_pilon:1436911..1437903- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCAAGTCAACCAAGAAGCGGTGGAAAATAGAAGAAAAGCCACCAT
TATTCTCAAGGAGCTTCGCGAACATCAACAGCAAGTTGAAGCAGATAAGG
AGGAAGCCACAGACCTCCGTTCGGAAACTCTAAACGAGCATTTCGAGAAA
GCCGCCAAGAATCTAGAGAAAGCAAAAACTGCCGATCAAGCATTGGTGGA
CGCCCAGATTTTTCACAAGCTCGGAGTGTACTCCAAACGTCAGGCCGAAC
AGCTGCAAACAGGGTTGCGTACATATGACATCAAGACGTTTACCGACAAT
CTCATTGCAAAGTTGCGTCGCGCCAATGCAGAAAAGTATGGCGAAGAAGA
GGAACAAGCTCAAAACGTTTCGGTTAATTTTCTAGATATTGGAAGAAGTG
TGTTCGACAGATGGAAGACGGTGCACTTCCAAGATTCGCATTTTGGAAAC
GCACCGAAAGAGGTAGTTAAGAAAGTCGGAGAACGAAAGAGACCAGAGAG
AATCAGGAAGGGCGGTCCTGCCACCAAGCCAAATGAACTACGACCTACAG
ATATGGAAGAAACCGAAACCGACAAGCAAGTAGCAGAAATGAAGCGGGAA
TTGCAACGCAGAAAACGCTGCAACTTCTGGCTGTTTGTGATCGATCCGAA
AAGCTTTCCTCGCTCTGTTGAAAATGTTTTCCATTCATCCTTCCTCGTCA
AGGAAAAATTCGCTGCTCTTGATATGAAGAGTGAAGCTGAACCAACGATT
AGATATGTCGACCCCATGGCGGATGAGATGGATGACGAGGAACATGAAAA
AAGGGGCGCTGAGGAATATATTGGTAATTCACAGTTCATCATGGGTTTCG
ATAGAAATTTATGGCAAGAAATTATTCGCAAGCACAACATTCGAAAATGC
CTTTTCCCTCCAAAGAAAAGAATGAACGAGGATGAGCAATACCGACAACT
GCAAGCGTATGAACAAGAAGAAATGGAATCCGCCTCGTTTTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1436911..1437903-

>Gchil1664.t1 ID=Gchil1664.t1|Name=Gchil1664.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00004403_pilon:1436911..1437903- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTCAAGTCAACCAAGAAGCGGTGGAAAATAGAAGAAAAGCCACCAT
TATTCTCAAGGAGCTTCGCGAACATCAACAGCAAGTTGAAGCAGATAAGG
AGGAAGCCACAGACCTCCGTTCGGAAACTCTAAACGAGCATTTCGAGAAA
GCCGCCAAGAATCTAGAGAAAGCAAAAACTGCCGATCAAGCATTGGTGGA
CGCCCAGATTTTTCACAAGCTCGGAGTGTACTCCAAACGTCAGGCCGAAC
AGCTGCAAACAGGGTTGCGTACATATGACATCAAGACGTTTACCGACAAT
CTCATTGCAAAGTTGCGTCGCGCCAATGCAGAAAAGTATGGCGAAGAAGA
GGAACAAGCTCAAAACGTTTCGGTTAATTTTCTAGATATTGGAAGAAGTG
TGTTCGACAGATGGAAGACGGTGCACTTCCAAGATTCGCATTTTGGAAAC
GCACCGAAAGAGGTAGTTAAGAAAGTCGGAGAACGAAAGAGACCAGAGAG
AATCAGGAAGGGCGGTCCTGCCACCAAGCCAAATGAACTACGACCTACAG
ATATGGAAGAAACCGAAACCGACAAGCAAGTAGCAGAAATGAAGCGGGAA
TTGCAACGCAGAAAACGCTGCAACTTCTGGCTGTTTGTGATCGATCCGAA
AAGCTTTCCTCGCTCTGTTGAAAATGTTTTCCATTCATCCTTCCTCGTCA
AGGAAAAATTCGCTGCTCTTGATATGAAGAGTGAAGCTGAACCAACGATT
AGATATGTCGACCCCATGGCGGATGAGATGGATGACGAGGAACATGAAAA
AAGGGGCGCTGAGGAATATATTGGTAATTCACAGTTCATCATGGGTTTCG
ATAGAAATTTATGGCAAGAAATTATTCGCAAGCACAACATTCGAAAATGC
CTTTTCCCTCCAAAGAAAAGAATGAACGAGGATGAGCAATACCGACAACT
GCAAGCGTATGAACAAGAAGAAATGGAATCCGCCTCGTTTTGA
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